FC876172

Overview
NameFC876172
Unique NameFC876172
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length740
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3PG_LEIME (Glyceraldehyde-3-phosphate dehydrogenase, glycosomal OS=Leishmania mexicana GN=GAPG PE=1 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 3.630e-15
Identity = 52/132 (39.39%), Postives = 68/132 (51.52%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFID----AKYMAYMFKYDSTHGVFKGTINVVDDS-------TLEINGKLIK-VFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAKGGYISS 726
            KVGINGFGRIGR+                    +D    A+Y AY  K+D+ HG  K T+  V  S        L +NG  IK V ++R+PA++PWG  GVDYV+ES+G+F           GGAK   IS+
Sbjct:    5 KVGINGFGRIGRMVFQAICDQGLIGTEIDVVAVVDMSTNAEYFAYQMKHDTVHGRPKYTVEAVKSSPSVETADVLVVNGHRIKCVKAQRNPADLPWGKLGVDYVIESTGLFTDKLKAEGHIKGGAKKVVISA 136          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P_ESCHE (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Escherichia hermannii GN=gap PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.741e-15
Identity = 39/81 (48.15%), Postives = 52/81 (64.20%), Query Frame = 1
Query:  466 IDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAK 708
            +DA+YMAYM KYDSTHG F GT+ V  D  L +NGK I+V +++DPA + W + GVD V E++G+F            GAK
Sbjct:   21 LDAEYMAYMLKYDSTHGRFDGTVEV-KDGHLVVNGKKIRVTAEKDPANLKWNEVGVDVVAEATGIFLTDETARKHITAGAK 100          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3PG_CRIFA (Glyceraldehyde-3-phosphate dehydrogenase, glycosomal OS=Crithidia fasciculata GN=GAPDG PE=3 SV=3)

HSP 1 Score: 81.6481 bits (200), Expect = 4.741e-15
Identity = 51/132 (38.64%), Postives = 68/132 (51.52%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXN----DPFIDAKYMAYMFKYDSTHGVFKGTINVVDDS-------TLEING-KLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAKGGYISS 726
            KVGINGFGRIGR+                     D   DA+Y AY  K+D+ HG  K T+ V   S        L +NG +++ V + R+PA++PWG  GVDYV+ES+G+F           GGAK   IS+
Sbjct:    5 KVGINGFGRIGRMVFQSMCEDNVLGTELDVVAVVDMSTDAEYFAYQMKFDTVHGRPKYTVEVAKSSPSAKKPDVLVVNGHRILCVKADRNPADLPWGKLGVDYVIESTGLFTDKAKAEGHVKGGAKKVVISA 136          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3PA_SPIOL (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Spinacia oleracea GN=GAPA PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 4.741e-15
Identity = 45/120 (37.50%), Postives = 59/120 (49.17%), Query Frame = 1
Query:  355 DGNTKVGINGFGRIGR--LXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAK 708
            +   KV INGFGRIGR  L                ND     K  +++ KYDS  G F   +    DS + ++GK+IKV S R+P  +PWGD G+D V+E +GVF            GAK
Sbjct:   64 EAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTG-GVKQASHLLKYDSILGTFDADVKTAGDSAISVDGKVIKVVSDRNPVNLPWGDMGIDLVIEGTGVFVDRDGAGKHLQAGAK 182          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P1_ESCFE (Glyceraldehyde-3-phosphate dehydrogenase A (Fragment) OS=Escherichia fergusonii GN=gapA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.192e-15
Identity = 40/81 (49.38%), Postives = 51/81 (62.96%), Query Frame = 1
Query:  466 IDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAK 708
            +DA YMAYM KYDSTHG F GT+ V  D  L +NGK I+V ++RDPA + W + GVD V E++G+F            GAK
Sbjct:   21 LDADYMAYMLKYDSTHGRFDGTVEV-KDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGIFLTDETARKHITAGAK 100          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P_CITFR (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Citrobacter freundii GN=gap PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.087e-15
Identity = 40/81 (49.38%), Postives = 51/81 (62.96%), Query Frame = 1
Query:  466 IDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAK 708
            +DA YMAYM KYDSTHG F GT+ V  D  L +NGK I+V ++RDPA + W + GVD V E++G+F            GAK
Sbjct:   21 LDADYMAYMLKYDSTHGRFNGTVEV-KDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAK 100          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3PB_PEA (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Pisum sativum GN=GAPB PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 8.087e-15
Identity = 46/127 (36.22%), Postives = 64/127 (50.39%), Query Frame = 1
Query:  334 TIQKSRSDGNTKVGINGFGRIGR--LXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAK 708
            T  K  +    KV INGFGRIGR  L                ND     K  +++ KYDS  G FK  + ++++ T+ ++GK IKV S RDP ++PW + G+D V+E +GVF            GAK
Sbjct:   76 TAVKGVTVAKLKVAINGFGRIGRNFLRCWHGRKDSPLEVIVVNDSG-GVKNASHLLKYDSMLGTFKAEVKILNNETITVDGKPIKVVSSRDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAK 201          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P_BACST (Glyceraldehyde-3-phosphate dehydrogenase OS=Bacillus stearothermophilus GN=gap PE=1 SV=5)

HSP 1 Score: 80.4925 bits (197), Expect = 1.056e-14
Identity = 49/120 (40.83%), Postives = 63/120 (52.50%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAKGGYISS 726
            KVGINGFGRIGR                 ND   DA  +A++ KYDS HG     ++V + + L +NGK I V ++RDP  + WG+ GVD VVES+G F            GAK   IS+
Sbjct:    4 KVGINGFGRIGRNVFRAALKNPDIEVVAVND-LTDANTLAHLLKYDSVHGRLDAEVSV-NGNNLVVNGKEIIVKAERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISA 121          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P_ESCBL (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Escherichia blattae GN=gap PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.379e-14
Identity = 39/81 (48.15%), Postives = 52/81 (64.20%), Query Frame = 1
Query:  466 IDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAK 708
            +DA+YMAYM KYDSTHG F GT+ V  D  L +NGK I+V ++RDPA + W + GV+ V E++G+F            GAK
Sbjct:   21 LDAEYMAYMLKYDSTHGRFNGTVEV-KDGHLIVNGKKIRVTAERDPANLKWNEAGVEVVAEATGLFLTDETARKHITAGAK 100          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P_STRPY (Glyceraldehyde-3-phosphate dehydrogenase OS=Streptococcus pyogenes GN=gap PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.801e-14
Identity = 43/99 (43.43%), Postives = 56/99 (56.57%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVF 663
            KVGINGFGRIGRL                ND   D   +A++ KYD+T G F GT+ V +    E+NG  IKV ++RDP  I W   GV+ V+E++G F
Sbjct:    4 KVGINGFGRIGRLAFRRIQNIEGVEVTRIND-LTDPNMLAHLLKYDTTQGRFDGTVEVKEGG-FEVNGNFIKVSAERDPENIDWATDGVEIVLEATGFF 100          
The following BLAST results are available for this feature:
BLAST of FC876172 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231
Match NameE-valueIdentityDescription
G3PG_LEIME3.630e-1539.39Glyceraldehyde-3-phosphate dehydrogenase, glycosom... [more]
G3P_ESCHE4.741e-1548.15Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3PG_CRIFA4.741e-1538.64Glyceraldehyde-3-phosphate dehydrogenase, glycosom... [more]
G3PA_SPIOL4.741e-1537.50Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3P1_ESCFE6.192e-1549.38Glyceraldehyde-3-phosphate dehydrogenase A (Fragme... [more]
G3P_CITFR8.087e-1549.38Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3PB_PEA8.087e-1536.22Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3P_BACST1.056e-1440.83Glyceraldehyde-3-phosphate dehydrogenase OS=Bacill... [more]
G3P_ESCBL1.379e-1448.15Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P_STRPY1.801e-1443.43Glyceraldehyde-3-phosphate dehydrogenase OS=Strept... [more]

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Properties
Property NameValue
Genbank descriptionC32001B08EF DevOvary1 Citrus clementina cDNA clone C32001B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876172 ID=FC876172; Name=FC876172; organism=Citrus clementina; type=EST; length=740bp
ACTGCCTCCTGCCTCCTCTCGAAAGCCGCAACAACCCAAACCTCGTTAGG
GTTTTTGCGAGAAGAGAGCTCGAAACAGTGTGCTTAAGCTCAACAAATGG
CCTTCTCTTCTCTCCTCAGATCTACGGCCTCCGCTTCTCTCGTCCGCGCC
GACCTCACTTCCTCGCCGTCCGATCGCGTCAAGGGATCATCGACTGCTGC
TTTCAGTCGCAACCTTAACACTTCGAGCATTTTCGGTACTTCAGTTCCAA
GTGGTTCATCTTCTTCATCACTACAGACATGTGCTGCAAAGAGTATTCAA
CCCATCAGAGCCACAGCTACTGAAATTCCTCCAACAATTCAAAAATCACG
GAGTGATGGAAACACAAAGGTCGGAATCAATGGTTTTGGTCGGATTGGAA
GGTTGGTTTTGCGAGTAGCAGCCTTCAGGGATGATGTTGACGTTGTGGCG
GTCAATGATCCTTTTATTGATGCCAAATACATGGCTTACATGTTTAAGTA
TGATTCTACTCATGGAGTTTTCAAGGGAACCATCAATGTCGTGGATGACT
CCACCTTAGAAATTAATGGGAAGCTGATTAAAGTTTTCAGCAAAAGGGAC
CCGGCAGAGATCCCTTGGGGTGACTATGGGGTTGATTATGTTGTTGAATC
TTCTGGAGTCTTTACAACATTGCGAAGGCTTCAGCTCACATGAAGGGGTG
GTGCAAAAGGTGGGTATATCAGCTCCATCAGCTGATGCAC
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