FC876172

Overview
NameFC876172
Unique NameFC876172
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length740
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P_STRP8 (Glyceraldehyde-3-phosphate dehydrogenase OS=Streptococcus pyogenes serotype M18 GN=gap PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.801e-14
Identity = 43/99 (43.43%), Postives = 56/99 (56.57%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVF 663
            KVGINGFGRIGRL                ND   D   +A++ KYD+T G F GT+ V +    E+NG  IKV ++RDP  I W   GV+ V+E++G F
Sbjct:    4 KVGINGFGRIGRLAFRRIQNIEGVEVTRIND-LTDPNMLAHLLKYDTTQGRFDGTVEVKEGG-FEVNGNFIKVSAERDPENIDWATDGVEIVLEATGFF 100          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P_STRP6 (Glyceraldehyde-3-phosphate dehydrogenase OS=Streptococcus pyogenes serotype M6 GN=gap PE=1 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 1.801e-14
Identity = 43/99 (43.43%), Postives = 56/99 (56.57%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVF 663
            KVGINGFGRIGRL                ND   D   +A++ KYD+T G F GT+ V +    E+NG  IKV ++RDP  I W   GV+ V+E++G F
Sbjct:    4 KVGINGFGRIGRLAFRRIQNIEGVEVTRIND-LTDPNMLAHLLKYDTTQGRFDGTVEVKEGG-FEVNGNFIKVSAERDPENIDWATDGVEIVLEATGFF 100          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P_STRP3 (Glyceraldehyde-3-phosphate dehydrogenase OS=Streptococcus pyogenes serotype M3 GN=gap PE=3 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 1.801e-14
Identity = 43/99 (43.43%), Postives = 56/99 (56.57%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVF 663
            KVGINGFGRIGRL                ND   D   +A++ KYD+T G F GT+ V +    E+NG  IKV ++RDP  I W   GV+ V+E++G F
Sbjct:    4 KVGINGFGRIGRLAFRRIQNIEGVEVTRIND-LTDPNMLAHLLKYDTTQGRFDGTVEVKEGG-FEVNGNFIKVSAERDPENIDWATDGVEIVLEATGFF 100          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P_STRP1 (Glyceraldehyde-3-phosphate dehydrogenase OS=Streptococcus pyogenes serotype M1 GN=gap PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.801e-14
Identity = 43/99 (43.43%), Postives = 56/99 (56.57%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVF 663
            KVGINGFGRIGRL                ND   D   +A++ KYD+T G F GT+ V +    E+NG  IKV ++RDP  I W   GV+ V+E++G F
Sbjct:    4 KVGINGFGRIGRLAFRRIQNIEGVEVTRIND-LTDPNMLAHLLKYDTTQGRFDGTVEVKEGG-FEVNGNFIKVSAERDPENIDWATDGVEIVLEATGFF 100          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P_STREQ (Glyceraldehyde-3-phosphate dehydrogenase OS=Streptococcus equisimilis GN=gap PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.801e-14
Identity = 43/99 (43.43%), Postives = 56/99 (56.57%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVF 663
            KVGINGFGRIGRL                ND   D   +A++ KYD+T G F GT+ V +    E+NG  IKV ++RDP  I W   GV+ V+E++G F
Sbjct:    4 KVGINGFGRIGRLAFRRIQNVEGVEVTRIND-LTDPNMLAHLLKYDTTQGRFDGTVEVKEGG-FEVNGNFIKVSAERDPENIDWATDGVEIVLEATGFF 100          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P_SEROD (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Serratia odorifera GN=gap PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.353e-14
Identity = 37/81 (45.68%), Postives = 52/81 (64.20%), Query Frame = 1
Query:  466 IDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAK 708
            +DA+YMAYM KYDSTHG F G++ V  D  L +NG+ I+V +++DPA + W + GVD V E++G+F            GAK
Sbjct:   21 LDAEYMAYMLKYDSTHGRFNGSVEV-KDGHLVVNGQTIRVTAEKDPANLKWNEVGVDVVAEATGIFLTDETARKHIAAGAK 100          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3PA_TOBAC (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic (Fragment) OS=Nicotiana tabacum GN=GAPA PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.353e-14
Identity = 44/120 (36.67%), Postives = 60/120 (50.00%), Query Frame = 1
Query:  355 DGNTKVGINGFGRIGR--LXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAK 708
            +   KV INGFGRIGR  L                ND     K  +++ KYDST G+F   +  V    + ++GK+I+V S R+P  +PWGD G+D V+E +GVF            GAK
Sbjct:   55 EAKLKVAINGFGRIGRNFLRCWHGRKDSPLDVIAINDTG-GVKQASHLLKYDSTLGIFDADVKPVGTDGISVDGKVIQVVSDRNPVNLPWGDLGIDLVIEGTGVFVDREGAGKHIQAGAK 173          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3PA_GUITH (Glyceraldehyde-3-phosphate dehydrogenase, chloroplastic OS=Guillardia theta GN=GAPC1 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.353e-14
Identity = 51/126 (40.48%), Postives = 63/126 (50.00%), Query Frame = 1
Query:  286 AKSIQPIRATATEIPPTIQKSRSDGNTKVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVF 663
            A + QP  A  T   PT+Q          GINGFGRIGRL                N       YMAY FKYDS HG ++G + VVD   L I+G+ +     RDP +I W   GV+Y+ ES+GVF
Sbjct:   31 APATQPKAAKMTG--PTMQA------VPCGINGFGRIGRLVARIMIKDPETKLLQVNAGSATPDYMAYQFKYDSIHGRYQGDV-VVDGDDLVIDGQRVITTRARDPKDIGWAKTGVEYLCESTGVF 147          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3PA_SCEVA (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic (Fragment) OS=Scenedesmus vacuolatus GN=GapA PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.013e-14
Identity = 43/112 (38.39%), Postives = 57/112 (50.89%), Query Frame = 1
Query:  379 NGFGRIGR--LXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAK 708
            NGFGRIGR  L                ND     K  +++ KYDST G F   + +VDD  + +NGK I+V S RDP ++PWG+  +D V+E +GVF            GAK
Sbjct:    1 NGFGRIGRNFLRCLETRQNSLLEVIAINDSG-GVKQASHLLKYDSTLGKFDADVKIVDDGHISVNGKSIRVVSSRDPTKLPWGEMEIDLVIEGTGVFIDTPGASKHIEAGAK 111          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P_THEAQ (Glyceraldehyde-3-phosphate dehydrogenase OS=Thermus aquaticus GN=gap PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 6.846e-14
Identity = 47/114 (41.23%), Postives = 60/114 (52.63%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAK 708
            KVGINGFGRIGR                 ND   D K +A++ KYDS +  F G +   DD  L ++GK I+  + +DP EIPW + GV  V+ES+GVF           GGAK
Sbjct:    2 KVGINGFGRIGR-QVFRILHSRGVEVALIND-LTDNKTLAHLLKYDSIYHRFPGEV-AYDDQYLYVDGKAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAK 112          
The following BLAST results are available for this feature:
BLAST of FC876172 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231
Match NameE-valueIdentityDescription
G3P_STRP81.801e-1443.43Glyceraldehyde-3-phosphate dehydrogenase OS=Strept... [more]
G3P_STRP61.801e-1443.43Glyceraldehyde-3-phosphate dehydrogenase OS=Strept... [more]
G3P_STRP31.801e-1443.43Glyceraldehyde-3-phosphate dehydrogenase OS=Strept... [more]
G3P_STRP11.801e-1443.43Glyceraldehyde-3-phosphate dehydrogenase OS=Strept... [more]
G3P_STREQ1.801e-1443.43Glyceraldehyde-3-phosphate dehydrogenase OS=Strept... [more]
G3P_SEROD2.353e-1445.68Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3PA_TOBAC2.353e-1436.67Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_GUITH2.353e-1440.48Glyceraldehyde-3-phosphate dehydrogenase, chloropl... [more]
G3PA_SCEVA4.013e-1438.39Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3P_THEAQ6.846e-1441.23Glyceraldehyde-3-phosphate dehydrogenase OS=Thermu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32001B08EF DevOvary1 Citrus clementina cDNA clone C32001B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876172 ID=FC876172; Name=FC876172; organism=Citrus clementina; type=EST; length=740bp
ACTGCCTCCTGCCTCCTCTCGAAAGCCGCAACAACCCAAACCTCGTTAGG
GTTTTTGCGAGAAGAGAGCTCGAAACAGTGTGCTTAAGCTCAACAAATGG
CCTTCTCTTCTCTCCTCAGATCTACGGCCTCCGCTTCTCTCGTCCGCGCC
GACCTCACTTCCTCGCCGTCCGATCGCGTCAAGGGATCATCGACTGCTGC
TTTCAGTCGCAACCTTAACACTTCGAGCATTTTCGGTACTTCAGTTCCAA
GTGGTTCATCTTCTTCATCACTACAGACATGTGCTGCAAAGAGTATTCAA
CCCATCAGAGCCACAGCTACTGAAATTCCTCCAACAATTCAAAAATCACG
GAGTGATGGAAACACAAAGGTCGGAATCAATGGTTTTGGTCGGATTGGAA
GGTTGGTTTTGCGAGTAGCAGCCTTCAGGGATGATGTTGACGTTGTGGCG
GTCAATGATCCTTTTATTGATGCCAAATACATGGCTTACATGTTTAAGTA
TGATTCTACTCATGGAGTTTTCAAGGGAACCATCAATGTCGTGGATGACT
CCACCTTAGAAATTAATGGGAAGCTGATTAAAGTTTTCAGCAAAAGGGAC
CCGGCAGAGATCCCTTGGGGTGACTATGGGGTTGATTATGTTGTTGAATC
TTCTGGAGTCTTTACAACATTGCGAAGGCTTCAGCTCACATGAAGGGGTG
GTGCAAAAGGTGGGTATATCAGCTCCATCAGCTGATGCAC
back to top