FC876172

Overview
NameFC876172
Unique NameFC876172
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length740
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15072 contig Ccv1_Contig15072:93..833. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P_MYCGE (Glyceraldehyde-3-phosphate dehydrogenase OS=Mycoplasma genitalium GN=gapA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.941e-14
Identity = 45/120 (37.50%), Postives = 62/120 (51.67%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAKGGYISS 726
            KV INGFGRIGRL                ND     + +A++ KYDS HG  K  I V   + L+I+ K + VFS++DP  +PW ++ +D V+ES+G F            GAK   IS+
Sbjct:    9 KVAINGFGRIGRLVFRSLLSKANVEVVAIND-LTQPEVLAHLLKYDSAHGELKRKITV-KQNILQIDRKKVYVFSEKDPQNLPWDEHDIDVVIESTGRFVSEEGASLHLKAGAKRVIISA 126          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3PP_RALEH (Glyceraldehyde-3-phosphate dehydrogenase, plasmid OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=cbbGP PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.941e-14
Identity = 45/122 (36.89%), Postives = 65/122 (53.28%), Query Frame = 1
Query:  367 KVGINGFGRIGR--LXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAKGGYISS 726
            KV ING+GRIGR  L                 +   +A   A++ +YD+ HG F G ++V D     +NG  I+V ++R+PAE+PWG+ GVD V+E +G+F           GGAK   IS+
Sbjct:    4 KVAINGYGRIGRNVLRAHYEGGKRHDLEIVAINDLGNAATNAHLTQYDTVHGRFPGEVSV-DGDAFRVNGDRIRVLAQRNPAELPWGELGVDVVMECTGLFTSKEKASAHLKGGAKKVIISA 124          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3PC_RALEH (Glyceraldehyde-3-phosphate dehydrogenase, chromosomal OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=cbbGC PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.941e-14
Identity = 45/122 (36.89%), Postives = 65/122 (53.28%), Query Frame = 1
Query:  367 KVGINGFGRIGR--LXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAKGGYISS 726
            KV ING+GRIGR  L                 +   +A   A++ +YD+ HG F G ++V D     +NG  I+V ++R+PAE+PWG+ GVD V+E +G+F           GGAK   IS+
Sbjct:    4 KVAINGYGRIGRNVLRAHYEGGKRHDIEIVAINDLGNAATNAHLTQYDTVHGRFPGEVSV-DGDAFRVNGDRIRVLAQRNPAELPWGELGVDVVMECTGLFTSKEKASAHLRGGAKKVIISA 124          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3PA_PEA (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Pisum sativum GN=GAPA PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 8.941e-14
Identity = 44/116 (37.93%), Postives = 59/116 (50.86%), Query Frame = 1
Query:  367 KVGINGFGRIGR--LXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAK 708
            KV INGFGRIGR  L                ND     K  +++ KYDST G+F   +  V    + ++GK+IKV S R+PA +PW + G+D V+E +GVF            GAK
Sbjct:   72 KVAINGFGRIGRNFLRCWHGRKDSPLDVIAINDTG-GVKQASHLLKYDSTLGIFDADVKPVGTDGISVDGKVIKVVSDRNPANLPWKELGIDLVIEGTGVFVDREGAGRHITAGAK 186          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P_BACCO (Glyceraldehyde-3-phosphate dehydrogenase OS=Bacillus coagulans GN=gap PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.168e-13
Identity = 48/120 (40.00%), Postives = 63/120 (52.50%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAKGGYISS 726
            KVGINGFGRIGR                 ND   +A  +A++ KYDS HG     + VV+D  + +NGK I V ++R+P  + WG+ GVD VVES+G F            GAK   IS+
Sbjct:    4 KVGINGFGRIGRNVFRAAVKNPDIEVVAVNDLTANADGLAHLLKYDSVHGRLDAEV-VVNDG-VSVNGKEIIVKAERNPENLAWGEIGVDIVVESTGRFTKREDAAKHLEAGAKKVIISA 121          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3PA_ARATH (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Arabidopsis thaliana GN=GAPA PE=1 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 1.992e-13
Identity = 42/125 (33.60%), Postives = 64/125 (51.20%), Query Frame = 1
Query:  340 QKSRSDGNTKVGINGFGRIGR--LXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAK 708
            +K  ++   KV INGFGRIGR  L                ND     K  +++ KYDST G+F   +    ++ + ++GK+I+V S R+P+ +PW + G+D V+E +GVF            GAK
Sbjct:   54 RKGVTEAKLKVAINGFGRIGRNFLRCWHGRKDSPLDIIAINDTG-GVKQASHLLKYDSTLGIFDADVKPSGETAISVDGKIIQVVSNRNPSLLPWKELGIDIVIEGTGVFVDREGAGKHIEAGAK 177          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P1_STAAW (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Staphylococcus aureus (strain MW2) GN=gapA1 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.992e-13
Identity = 44/120 (36.67%), Postives = 60/120 (50.00%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAKGGYISS 726
            KV INGFGRIGRL                ND   D   +A++ KYD+  G F G + VVD     +NGK +K FS+ D +++PW D  +D V+E +G +            GAK   IS+
Sbjct:    4 KVAINGFGRIGRLAFRRIQEVEGLEVVAVND-LTDDDMLAHLLKYDTMQGRFTGEVEVVDGG-FRVNGKEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLISA 121          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P1_STAAU (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Staphylococcus aureus GN=gapA1 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.992e-13
Identity = 44/120 (36.67%), Postives = 60/120 (50.00%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAKGGYISS 726
            KV INGFGRIGRL                ND   D   +A++ KYD+  G F G + VVD     +NGK +K FS+ D +++PW D  +D V+E +G +            GAK   IS+
Sbjct:    4 KVAINGFGRIGRLAFRRIQEVEGLEVVAVND-LTDDDMLAHLLKYDTMQGRFTGEVEVVDGG-FRVNGKEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLISA 121          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P1_STAAS (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Staphylococcus aureus (strain MSSA476) GN=gapA1 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.992e-13
Identity = 44/120 (36.67%), Postives = 60/120 (50.00%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAKGGYISS 726
            KV INGFGRIGRL                ND   D   +A++ KYD+  G F G + VVD     +NGK +K FS+ D +++PW D  +D V+E +G +            GAK   IS+
Sbjct:    4 KVAINGFGRIGRLAFRRIQEVEGLEVVAVND-LTDDDMLAHLLKYDTMQGRFTGEVEVVDGG-FRVNGKEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLISA 121          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P1_STAAR (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Staphylococcus aureus (strain MRSA252) GN=gapA1 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.992e-13
Identity = 44/120 (36.67%), Postives = 60/120 (50.00%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAKGGYISS 726
            KV INGFGRIGRL                ND   D   +A++ KYD+  G F G + VVD     +NGK +K FS+ D +++PW D  +D V+E +G +            GAK   IS+
Sbjct:    4 KVAINGFGRIGRLAFRRIQEVEGLEVVAVND-LTDDDMLAHLLKYDTMQGRFTGEVEVVDGG-FRVNGKEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLISA 121          
The following BLAST results are available for this feature:
BLAST of FC876172 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231
Match NameE-valueIdentityDescription
G3P_MYCGE8.941e-1437.50Glyceraldehyde-3-phosphate dehydrogenase OS=Mycopl... [more]
G3PP_RALEH8.941e-1436.89Glyceraldehyde-3-phosphate dehydrogenase, plasmid ... [more]
G3PC_RALEH8.941e-1436.89Glyceraldehyde-3-phosphate dehydrogenase, chromoso... [more]
G3PA_PEA8.941e-1437.93Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3P_BACCO1.168e-1340.00Glyceraldehyde-3-phosphate dehydrogenase OS=Bacill... [more]
G3PA_ARATH1.992e-1333.60Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3P1_STAAW1.992e-1336.67Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Stap... [more]
G3P1_STAAU1.992e-1336.67Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Stap... [more]
G3P1_STAAS1.992e-1336.67Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Stap... [more]
G3P1_STAAR1.992e-1336.67Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Stap... [more]

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Properties
Property NameValue
Genbank descriptionC32001B08EF DevOvary1 Citrus clementina cDNA clone C32001B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876172 ID=FC876172; Name=FC876172; organism=Citrus clementina; type=EST; length=740bp
ACTGCCTCCTGCCTCCTCTCGAAAGCCGCAACAACCCAAACCTCGTTAGG
GTTTTTGCGAGAAGAGAGCTCGAAACAGTGTGCTTAAGCTCAACAAATGG
CCTTCTCTTCTCTCCTCAGATCTACGGCCTCCGCTTCTCTCGTCCGCGCC
GACCTCACTTCCTCGCCGTCCGATCGCGTCAAGGGATCATCGACTGCTGC
TTTCAGTCGCAACCTTAACACTTCGAGCATTTTCGGTACTTCAGTTCCAA
GTGGTTCATCTTCTTCATCACTACAGACATGTGCTGCAAAGAGTATTCAA
CCCATCAGAGCCACAGCTACTGAAATTCCTCCAACAATTCAAAAATCACG
GAGTGATGGAAACACAAAGGTCGGAATCAATGGTTTTGGTCGGATTGGAA
GGTTGGTTTTGCGAGTAGCAGCCTTCAGGGATGATGTTGACGTTGTGGCG
GTCAATGATCCTTTTATTGATGCCAAATACATGGCTTACATGTTTAAGTA
TGATTCTACTCATGGAGTTTTCAAGGGAACCATCAATGTCGTGGATGACT
CCACCTTAGAAATTAATGGGAAGCTGATTAAAGTTTTCAGCAAAAGGGAC
CCGGCAGAGATCCCTTGGGGTGACTATGGGGTTGATTATGTTGTTGAATC
TTCTGGAGTCTTTACAACATTGCGAAGGCTTCAGCTCACATGAAGGGGTG
GTGCAAAAGGTGGGTATATCAGCTCCATCAGCTGATGCAC
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