FC876172

Overview
NameFC876172
Unique NameFC876172
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length740
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15072 contig Ccv1_Contig15072:93..833. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P1_STAAN (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Staphylococcus aureus (strain N315) GN=gapA1 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.992e-13
Identity = 44/120 (36.67%), Postives = 60/120 (50.00%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAKGGYISS 726
            KV INGFGRIGRL                ND   D   +A++ KYD+  G F G + VVD     +NGK +K FS+ D +++PW D  +D V+E +G +            GAK   IS+
Sbjct:    4 KVAINGFGRIGRLAFRRIQEVEGLEVVAVND-LTDDDMLAHLLKYDTMQGRFTGEVEVVDGG-FRVNGKEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLISA 121          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P1_STAAM (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=gapA1 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.992e-13
Identity = 44/120 (36.67%), Postives = 60/120 (50.00%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAKGGYISS 726
            KV INGFGRIGRL                ND   D   +A++ KYD+  G F G + VVD     +NGK +K FS+ D +++PW D  +D V+E +G +            GAK   IS+
Sbjct:    4 KVAINGFGRIGRLAFRRIQEVEGLEVVAVND-LTDDDMLAHLLKYDTMQGRFTGEVEVVDGG-FRVNGKEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLISA 121          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P1_STAAC (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Staphylococcus aureus (strain COL) GN=gapA1 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.992e-13
Identity = 44/120 (36.67%), Postives = 60/120 (50.00%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAKGGYISS 726
            KV INGFGRIGRL                ND   D   +A++ KYD+  G F G + VVD     +NGK +K FS+ D +++PW D  +D V+E +G +            GAK   IS+
Sbjct:    4 KVAINGFGRIGRLAFRRIQEVEGLEVVAVND-LTDDDMLAHLLKYDTMQGRFTGEVEVVDGG-FRVNGKEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLISA 121          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P1_STAES (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=gapA1 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.397e-13
Identity = 43/120 (35.83%), Postives = 59/120 (49.17%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAKGGYISS 726
            KV INGFGRIGRL                ND   D   +A++ KYD+  G F G + V++     +NGK IK F + D  ++PWGD  +D V+E +G +            GAK   IS+
Sbjct:    4 KVAINGFGRIGRLAFRRIQDVEGLEVVAVND-LTDDDMLAHLLKYDTMQGRFTGEVEVIEGG-FRVNGKEIKSFDEPDAGKLPWGDLDIDVVLECTGFYTDKEKAQAHIDAGAKKVLISA 121          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P1_STAEQ (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=gapA1 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.397e-13
Identity = 43/120 (35.83%), Postives = 59/120 (49.17%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAKGGYISS 726
            KV INGFGRIGRL                ND   D   +A++ KYD+  G F G + V++     +NGK IK F + D  ++PWGD  +D V+E +G +            GAK   IS+
Sbjct:    4 KVAINGFGRIGRLAFRRIQDVEGLEVVAVND-LTDDDMLAHLLKYDTMQGRFTGEVEVIEGG-FRVNGKEIKSFDEPDAGKLPWGDLDIDVVLECTGFYTDKEKAQAHIDAGAKKVLISA 121          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P_STRAE (Glyceraldehyde-3-phosphate dehydrogenase OS=Streptomyces arenae GN=gap PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.437e-13
Identity = 40/114 (35.09%), Postives = 56/114 (49.12%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAK 708
            ++GINGFGRIGR                  +   D   MA++  YDS  G F   +   +   + +  + IKV ++RDP  +PWGD GVD V+ES+G+F           GGAK
Sbjct:    4 RIGINGFGRIGRNVFRAAAARSSELEIVAVNDLGDVPTMAHLLAYDSILGRFPEEVTA-EPGAIRVGDRTIKVLAERDPGALPWGDLGVDIVIESTGIFTDAAKARSHVDGGAK 116          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P_BORBU (Glyceraldehyde-3-phosphate dehydrogenase OS=Borrelia burgdorferi GN=gap PE=1 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 7.569e-13
Identity = 43/122 (35.25%), Postives = 63/122 (51.64%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAKGGYISSIS 732
            K+ INGFGRIGR                 ND   D K +A++ KYDST GV+   +    D  + ++G+ IK+ ++RDP  +PW   G+D V+ES+GVF              KGGY+  ++
Sbjct:    2 KLAINGFGRIGR-NVFKIAFERGIDIVAIND-LTDPKTLAHLLKYDSTFGVYNKKVES-RDGAIVVDGREIKIIAERDPKNLPWAKLGIDVVIESTGVFSSAT--------SDKGGYLDHVN 112          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P2_BACSU (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Bacillus subtilis GN=gapB PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.291e-12
Identity = 39/114 (34.21%), Postives = 60/114 (52.63%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAK 708
            KV INGFGRIGR+                N  +  A+ +A++ KYD+ HG +   +   +DS + +NGK + + + RDP ++PW +Y +D VVE++G F            GAK
Sbjct:    4 KVAINGFGRIGRMVFRKAMLDDQIQVVAINASY-SAETLAHLIKYDTIHGRYDKEVVAGEDSLI-VNGKKVLLLNSRDPKQLPWREYDIDIVVEATGKFNAKDKAMGHIEAGAK 115          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P3_ECOLI (Putative glyceraldehyde-3-phosphate dehydrogenase C OS=Escherichia coli (strain K12) GN=gapC PE=5 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.906e-12
Identity = 39/121 (32.23%), Postives = 62/121 (51.24%), Query Frame = 1
Query:  364 TKVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAKGGYISS 726
            +KVGINGFGRIGRL                 +     K +AY+ K+DS +G F  +++  +DS + ++GK I V+++++   IPW   G + +VE +G +            GAK   IS+
Sbjct:    2 SKVGINGFGRIGRLVLGRLLEVKSNIDVVAINDLTSPKILAYLLKHDSNYGPFPWSVDFTEDSLI-VDGKSIAVYAEKEAKNIPWKAKGAEIIVECTGFYTSAEKSQAHLDAGAKKVLISA 121          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P3_ECO57 (Glyceraldehyde-3-phosphate dehydrogenase C OS=Escherichia coli O157:H7 GN=gapC PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.906e-12
Identity = 39/121 (32.23%), Postives = 62/121 (51.24%), Query Frame = 1
Query:  364 TKVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAKGGYISS 726
            +KVGINGFGRIGRL                 +     K +AY+ K+DS +G F  +++  +DS + ++GK I V+++++   IPW   G + +VE +G +            GAK   IS+
Sbjct:    2 SKVGINGFGRIGRLVLRRLLEVKSNIDVVAINDLTSPKILAYLLKHDSNYGPFPWSVDFTEDSLI-VDGKSIAVYAEKEAKNIPWKAKGAEIIVECTGFYTSAEKSQAHLDAGAKKVLISA 121          
The following BLAST results are available for this feature:
BLAST of FC876172 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231
Match NameE-valueIdentityDescription
G3P1_STAAN1.992e-1336.67Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Stap... [more]
G3P1_STAAM1.992e-1336.67Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Stap... [more]
G3P1_STAAC1.992e-1336.67Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Stap... [more]
G3P1_STAES3.397e-1335.83Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Stap... [more]
G3P1_STAEQ3.397e-1335.83Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Stap... [more]
G3P_STRAE4.437e-1335.09Glyceraldehyde-3-phosphate dehydrogenase OS=Strept... [more]
G3P_BORBU7.569e-1335.25Glyceraldehyde-3-phosphate dehydrogenase OS=Borrel... [more]
G3P2_BACSU1.291e-1234.21Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Baci... [more]
G3P3_ECOLI4.906e-1232.23Putative glyceraldehyde-3-phosphate dehydrogenase ... [more]
G3P3_ECO574.906e-1232.23Glyceraldehyde-3-phosphate dehydrogenase C OS=Esch... [more]

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Properties
Property NameValue
Genbank descriptionC32001B08EF DevOvary1 Citrus clementina cDNA clone C32001B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876172 ID=FC876172; Name=FC876172; organism=Citrus clementina; type=EST; length=740bp
ACTGCCTCCTGCCTCCTCTCGAAAGCCGCAACAACCCAAACCTCGTTAGG
GTTTTTGCGAGAAGAGAGCTCGAAACAGTGTGCTTAAGCTCAACAAATGG
CCTTCTCTTCTCTCCTCAGATCTACGGCCTCCGCTTCTCTCGTCCGCGCC
GACCTCACTTCCTCGCCGTCCGATCGCGTCAAGGGATCATCGACTGCTGC
TTTCAGTCGCAACCTTAACACTTCGAGCATTTTCGGTACTTCAGTTCCAA
GTGGTTCATCTTCTTCATCACTACAGACATGTGCTGCAAAGAGTATTCAA
CCCATCAGAGCCACAGCTACTGAAATTCCTCCAACAATTCAAAAATCACG
GAGTGATGGAAACACAAAGGTCGGAATCAATGGTTTTGGTCGGATTGGAA
GGTTGGTTTTGCGAGTAGCAGCCTTCAGGGATGATGTTGACGTTGTGGCG
GTCAATGATCCTTTTATTGATGCCAAATACATGGCTTACATGTTTAAGTA
TGATTCTACTCATGGAGTTTTCAAGGGAACCATCAATGTCGTGGATGACT
CCACCTTAGAAATTAATGGGAAGCTGATTAAAGTTTTCAGCAAAAGGGAC
CCGGCAGAGATCCCTTGGGGTGACTATGGGGTTGATTATGTTGTTGAATC
TTCTGGAGTCTTTACAACATTGCGAAGGCTTCAGCTCACATGAAGGGGTG
GTGCAAAAGGTGGGTATATCAGCTCCATCAGCTGATGCAC
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