FC876172

Overview
NameFC876172
Unique NameFC876172
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length740
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P2_ANAVT (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=gap2 PE=3 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 6.407e-12
Identity = 41/116 (35.34%), Postives = 57/116 (49.14%), Query Frame = 1
Query:  367 KVGINGFGRIGR--LXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAK 708
            +V INGFGRIGR                   ND   D +  A++ KYDS  G  K      DD+++ +NGK IK  S R+P  +PW ++ +D ++ES+GVF            GAK
Sbjct:    3 RVAINGFGRIGRNFARCWLGRENSNIELVAVNDTS-DPRTNAHLLKYDSMLGKLKNVDITADDNSITVNGKTIKCVSDRNPENLPWKEWEIDLIIESTGVFTSKEGALKHVNAGAK 117          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3PA_CHOCR (Glyceraldehyde-3-phosphate dehydrogenase, chloroplastic OS=Chondrus crispus GN=GAPA PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.368e-12
Identity = 41/116 (35.34%), Postives = 59/116 (50.86%), Query Frame = 1
Query:  367 KVGINGFGRIGR--LXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAK 708
            +V INGFGRIGR  +                ND     K  +++ KYDS  G F   ++  +D T+ +NGK IK+ S R+P ++PW +  +D VVE++GVF            GAK
Sbjct:   80 RVAINGFGRIGRNFIRCWAGRSDSNMEVVCINDTS-GVKTASHLLKYDSILGTFDADVSAGED-TISVNGKTIKIVSNRNPLQLPWKEMNIDIVVEATGVFVDAPGAGKHIEAGAK 193          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P2_SYNY3 (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Synechocystis sp. (strain PCC 6803) GN=gap2 PE=1 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 1.093e-11
Identity = 42/117 (35.90%), Postives = 60/117 (51.28%), Query Frame = 1
Query:  364 TKVGINGFGRIGR--LXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAK 708
            T+V INGFGRIGR  L                ND   D +  A++ +YDS  G     I+  D++++ +NGK IK  S R+P  +PW ++ VD V+E++GVF            GAK
Sbjct:    2 TRVAINGFGRIGRNFLRCWLGRTDSQLEVVGINDTS-DPRTNAHLLRYDSMLGKLDADISA-DENSITVNGKTIKCVSDRNPLNLPWAEWNVDLVIEATGVFVTHEGATKHVQAGAK 116          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P2_ANASP (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Anabaena sp. (strain PCC 7120) GN=gap2 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.427e-11
Identity = 40/116 (34.48%), Postives = 57/116 (49.14%), Query Frame = 1
Query:  367 KVGINGFGRIGR--LXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAK 708
            +V INGFGRIGR                   ND   D +  A++ KYDS  G  K      DD+++ +NGK IK  S R+P  +PW ++ +D ++E++GVF            GAK
Sbjct:    3 RVAINGFGRIGRNFARCWLGRENTNIELVAVNDTS-DPRTNAHLLKYDSMLGKLKNVDITADDNSITVNGKTIKCVSDRNPENLPWKEWEIDLIIEATGVFVSKEGATKHINAGAK 117          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P_CHLMU (Glyceraldehyde-3-phosphate dehydrogenase OS=Chlamydia muridarum GN=gap PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.864e-11
Identity = 38/114 (33.33%), Postives = 54/114 (47.37%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAK 708
            ++ INGFGRIGRL                 +  +    + Y+FKYDSTHG F        D  L +  + I+  +++D  ++PW D  VD VVES+G+F            GAK
Sbjct:    2 RIVINGFGRIGRLVLRQILKRNAPIEVVAINDLVSGDLLTYLFKYDSTHGSFASQATF-SDGCLVVGERKIRFLAEKDVQKLPWKDLDVDVVVESTGLFVNKDDAAKHLDSGAK 114          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P_CHLPN (Glyceraldehyde-3-phosphate dehydrogenase OS=Chlamydia pneumoniae GN=gap PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.153e-11
Identity = 40/120 (33.33%), Postives = 57/120 (47.50%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAKGGYISS 726
            KV INGFGRIGRL                 +  +    + Y+FK+DSTHG F   +    D  + +  + I+  S+R+   +PW D GVD V+E +G+F            GAK   IS+
Sbjct:    2 KVVINGFGRIGRLVLRQILKRNSSVEVLAINDLVPGDALTYLFKFDSTHGRFPEDVRCEADHLI-VGKRKIQFLSERNVQNLPWKDLGVDLVIECTGLFTKKEDAEKHIQAGAKRVLISA 120          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: E4PD_PROMH (D-erythrose-4-phosphate dehydrogenase OS=Proteus mirabilis (strain HI4320) GN=epd PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.153e-11
Identity = 41/116 (35.34%), Postives = 59/116 (50.86%), Query Frame = 1
Query:  367 KVGINGFGRIGR--LXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAK 708
            +V INGFGRIGR  L                 +   DA  +A++ KYDS+HG F   I V +D  L++    I++F   D A++PWG+ G+D V++ SGV+            GAK
Sbjct:    4 RVAINGFGRIGRNVLRALYESGKRAEISVVAINELADATGIAHLLKYDSSHGRFAWDIRVNND-LLQVGDDAIRLFHHADIADLPWGELGIDVVLDCSGVYGSRADGEAHIAQGAK 118          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P_ZYMMO (Glyceraldehyde-3-phosphate dehydrogenase OS=Zymomonas mobilis GN=gap PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.084e-11
Identity = 43/121 (35.54%), Postives = 60/121 (49.59%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXN-DPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAKGGYISS 726
            KV INGFGRIGRL                  +     +  A++FK DS HG + GT+   + + + I+GK I V ++RDPA +P    GVD V+E +G+F            GAK   IS+
Sbjct:    4 KVAINGFGRIGRLAARAILSRPDSGLELVTINDLGSVEGNAFLFKRDSAHGTYPGTVTT-EGNDMVIDGKKIVVTAERDPANLPHKKLGVDIVMECTGIFTNTEKASAHLTAGAKKVLISA 123          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3PA_GRAVE (Glyceraldehyde-3-phosphate dehydrogenase, chloroplastic OS=Gracilaria verrucosa GN=GAPA PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.252e-11
Identity = 42/116 (36.21%), Postives = 58/116 (50.00%), Query Frame = 1
Query:  367 KVGINGFGRIGR--LXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAK 708
            +V INGFGRIGR  +                ND     K  +++ KYDS  G F   +   +DS + ++GK IKV S R+P E+PW +  +D VVE++GVF            GAK
Sbjct:   82 RVAINGFGRIGRNFIRCWAGRTDSNMDVVCINDTS-GVKTASHLLKYDSILGTFDSDVVAGEDS-ITVDGKTIKVVSNRNPLELPWKEMEIDIVVEATGVFVDAVGAGKHIQAGAK 195          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P2_STAES (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=gapA2 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.252e-11
Identity = 35/115 (30.43%), Postives = 58/115 (50.43%), Query Frame = 1
Query:  364 TKVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAK 708
            T + ING GRIGR+                N  +   + +A++  YD+THGV+   +  ++ S +++NG  IK+ S R+P  +PW +  +D V+E++G F            GAK
Sbjct:    3 TNIAINGMGRIGRMVLRIALNNKNLNVKAINASY-PPETIAHLLNYDTTHGVYDKKVEPIE-SGIKVNGHEIKLLSDRNPENLPWNEMDIDVVIEATGKFNHGDKAVAHINAGAK 115          
The following BLAST results are available for this feature:
BLAST of FC876172 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231
Match NameE-valueIdentityDescription
G3P2_ANAVT6.407e-1235.34Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Anab... [more]
G3PA_CHOCR8.368e-1235.34Glyceraldehyde-3-phosphate dehydrogenase, chloropl... [more]
G3P2_SYNY31.093e-1135.90Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Syne... [more]
G3P2_ANASP1.427e-1134.48Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Anab... [more]
G3P_CHLMU1.864e-1133.33Glyceraldehyde-3-phosphate dehydrogenase OS=Chlamy... [more]
G3P_CHLPN4.153e-1133.33Glyceraldehyde-3-phosphate dehydrogenase OS=Chlamy... [more]
E4PD_PROMH4.153e-1135.34D-erythrose-4-phosphate dehydrogenase OS=Proteus m... [more]
G3P_ZYMMO7.084e-1135.54Glyceraldehyde-3-phosphate dehydrogenase OS=Zymomo... [more]
G3PA_GRAVE9.252e-1136.21Glyceraldehyde-3-phosphate dehydrogenase, chloropl... [more]
G3P2_STAES9.252e-1130.43Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Stap... [more]

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Properties
Property NameValue
Genbank descriptionC32001B08EF DevOvary1 Citrus clementina cDNA clone C32001B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876172 ID=FC876172; Name=FC876172; organism=Citrus clementina; type=EST; length=740bp
ACTGCCTCCTGCCTCCTCTCGAAAGCCGCAACAACCCAAACCTCGTTAGG
GTTTTTGCGAGAAGAGAGCTCGAAACAGTGTGCTTAAGCTCAACAAATGG
CCTTCTCTTCTCTCCTCAGATCTACGGCCTCCGCTTCTCTCGTCCGCGCC
GACCTCACTTCCTCGCCGTCCGATCGCGTCAAGGGATCATCGACTGCTGC
TTTCAGTCGCAACCTTAACACTTCGAGCATTTTCGGTACTTCAGTTCCAA
GTGGTTCATCTTCTTCATCACTACAGACATGTGCTGCAAAGAGTATTCAA
CCCATCAGAGCCACAGCTACTGAAATTCCTCCAACAATTCAAAAATCACG
GAGTGATGGAAACACAAAGGTCGGAATCAATGGTTTTGGTCGGATTGGAA
GGTTGGTTTTGCGAGTAGCAGCCTTCAGGGATGATGTTGACGTTGTGGCG
GTCAATGATCCTTTTATTGATGCCAAATACATGGCTTACATGTTTAAGTA
TGATTCTACTCATGGAGTTTTCAAGGGAACCATCAATGTCGTGGATGACT
CCACCTTAGAAATTAATGGGAAGCTGATTAAAGTTTTCAGCAAAAGGGAC
CCGGCAGAGATCCCTTGGGGTGACTATGGGGTTGATTATGTTGTTGAATC
TTCTGGAGTCTTTACAACATTGCGAAGGCTTCAGCTCACATGAAGGGGTG
GTGCAAAAGGTGGGTATATCAGCTCCATCAGCTGATGCAC
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