FC876174

Overview
NameFC876174
Unique NameFC876174
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876174 vs. ExPASy Swiss-Prot
Match: EFTU_STRP7 (Elongation factor Tu OS=Streptococcus pneumoniae (strain 70585) GN=tuf PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.845e-22
Identity = 71/204 (34.80%), Postives = 103/204 (50.49%), Query Frame = 3
Query:   90 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEVAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPTS---GFEGDNMIE 692
            + K H+NI  IGHVD GK+T T  +   L            + +     +   YA + D    ERERGITI+ A  ++ET K +   IDAPGH D++KNMITG +Q D A+L++ ST G          QTREH LL+  +GVK +I   NK+D       +   + +  E+   L +  +  + +P +  S     EGD+  E
Sbjct:    8 RSKPHVNIGTIGHVDHGKTTLTAAITTVLA-----------RRLPSSVNQPKDYASI-DAAPEERERGITINTAHVEYETEKRHYAHIDAPGHADYVKNMITGAAQMDGAILVVASTDGPMP-------QTREHILLSRQVGVKHLIVFMNKVDLVD---DEELLELVEMEIRDLLSEYDFPGDDLPVIQGSALKALEGDSKYE 189          
BLAST of FC876174 vs. ExPASy Swiss-Prot
Match: EFTU_STRP4 (Elongation factor Tu OS=Streptococcus pneumoniae serotype 19F (strain G54) GN=tuf PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.845e-22
Identity = 71/204 (34.80%), Postives = 103/204 (50.49%), Query Frame = 3
Query:   90 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEVAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPTS---GFEGDNMIE 692
            + K H+NI  IGHVD GK+T T  +   L            + +     +   YA + D    ERERGITI+ A  ++ET K +   IDAPGH D++KNMITG +Q D A+L++ ST G          QTREH LL+  +GVK +I   NK+D       +   + +  E+   L +  +  + +P +  S     EGD+  E
Sbjct:    8 RSKPHVNIGTIGHVDHGKTTLTAAITTVLA-----------RRLPSSVNQPKDYASI-DAAPEERERGITINTAHVEYETEKRHYAHIDAPGHADYVKNMITGAAQMDGAILVVASTDGPMP-------QTREHILLSRQVGVKHLIVFMNKVDLVD---DEELLELVEMEIRDLLSEYDFPGDDLPVIQGSALKALEGDSKYE 189          
BLAST of FC876174 vs. ExPASy Swiss-Prot
Match: EFTU_STRP2 (Elongation factor Tu OS=Streptococcus pneumoniae serotype 2 (strain D39 / NCTC 7466) GN=tuf PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.845e-22
Identity = 71/204 (34.80%), Postives = 103/204 (50.49%), Query Frame = 3
Query:   90 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEVAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPTS---GFEGDNMIE 692
            + K H+NI  IGHVD GK+T T  +   L            + +     +   YA + D    ERERGITI+ A  ++ET K +   IDAPGH D++KNMITG +Q D A+L++ ST G          QTREH LL+  +GVK +I   NK+D       +   + +  E+   L +  +  + +P +  S     EGD+  E
Sbjct:    8 RSKPHVNIGTIGHVDHGKTTLTAAITTVLA-----------RRLPSSVNQPKDYASI-DAAPEERERGITINTAHVEYETEKRHYAHIDAPGHADYVKNMITGAAQMDGAILVVASTDGPMP-------QTREHILLSRQVGVKHLIVFMNKVDLVD---DEELLELVEMEIRDLLSEYDFPGDDLPVIQGSALKALEGDSKYE 189          
BLAST of FC876174 vs. ExPASy Swiss-Prot
Match: EFTU_STROR (Elongation factor Tu OS=Streptococcus oralis GN=tuf PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.845e-22
Identity = 71/204 (34.80%), Postives = 103/204 (50.49%), Query Frame = 3
Query:   90 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEVAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPTS---GFEGDNMIE 692
            + K H+NI  IGHVD GK+T T  +   L            + +     +   YA + D    ERERGITI+ A  ++ET K +   IDAPGH D++KNMITG +Q D A+L++ ST G          QTREH LL+  +GVK +I   NK+D       +   + +  E+   L +  +  + +P +  S     EGD+  E
Sbjct:    8 RSKPHVNIGTIGHVDHGKTTLTAAITTVLA-----------RRLPSAVNQPKDYASI-DAAPEERERGITINTAHVEYETEKRHYAHIDAPGHADYVKNMITGAAQMDGAILVVASTDGPMP-------QTREHILLSRQVGVKHLIVFMNKIDLVD---DEELLELVEMEIRDLLSEYDFPGDDLPVIQGSALKALEGDSKYE 189          
BLAST of FC876174 vs. ExPASy Swiss-Prot
Match: EFTU_STRGC (Elongation factor Tu OS=Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) GN=tuf PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.845e-22
Identity = 71/204 (34.80%), Postives = 103/204 (50.49%), Query Frame = 3
Query:   90 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEVAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPTS---GFEGDNMIE 692
            + K H+NI  IGHVD GK+T T  +   L            + +     +   YA + D    ERERGITI+ A  ++ET K +   IDAPGH D++KNMITG +Q D A+L++ ST G          QTREH LL+  +GVK +I   NK+D       +   + +  E+   L +  +  + +P +  S     EGD+  E
Sbjct:    8 RSKPHVNIGTIGHVDHGKTTLTAAITTVLA-----------RRLPSSVNQPKDYASI-DAAPEERERGITINTAHVEYETEKRHYAHIDAPGHADYVKNMITGAAQMDGAILVVASTDGPMP-------QTREHILLSRQVGVKHLIVFMNKVDLVD---DEELLELVEMEIRDLLSEYDFPGDDLPVIQGSALKALEGDSKYE 189          
BLAST of FC876174 vs. ExPASy Swiss-Prot
Match: EFTU_RENSM (Elongation factor Tu OS=Renibacterium salmoninarum (strain ATCC 33209 / DSM 20767 / IFO 15589) GN=tuf PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.845e-22
Identity = 70/200 (35.00%), Postives = 101/200 (50.50%), Query Frame = 3
Query:   90 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEVAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPTSG---FEGD 680
            + K H+NI  IGHVD GK+T T  +   L          ++K      +R F     +D    E++RGITI+I+  +++T K +   +DAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D       +   D +  EV   L    ++ +  P V  SG    EGD
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTAAISKVL----------YDKYPTLNEQRDFAS---IDSAPEEKQRGITINISHVEYQTEKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPM-------AQTREHVLLARQVGVPYLLVALNKSDMVE---DEELLDLVEMEVRELLSSQEFDGDNAPVVRVSGLKALEGD 184          
BLAST of FC876174 vs. ExPASy Swiss-Prot
Match: EFTU_LACS1 (Elongation factor Tu OS=Lactobacillus salivarius subsp. salivarius (strain UCC118) GN=tuf PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.845e-22
Identity = 75/204 (36.76%), Postives = 103/204 (50.49%), Query Frame = 3
Query:   90 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEVAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPTS---GFEGDNMIE 692
            + K H+NI  IGHVD GK+T T  +   L           EK +AE +     YA + D    ERERGITI+ A  ++ET K +   IDAPGH D++KNMITG +Q D A+L++ +T G          QTREH LLA  +GV+ ++   NK D           D +  EV   L +  +  + +P +  S     EGD   E
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTAAITKVLA----------EKGLAEASD----YASI-DAAPEERERGITINTAHVEYETEKRHYAHIDAPGHADYVKNMITGAAQMDGAILVVAATDGPMP-------QTREHILLARQVGVEYIVVFLNKCDLVD---DDELLDLVEMEVRDLLSEYDFPGDDIPVIRGSALKALEGDKDAE 186          
BLAST of FC876174 vs. ExPASy Swiss-Prot
Match: EFTU_CORGL (Elongation factor Tu OS=Corynebacterium glutamicum GN=tuf PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.845e-22
Identity = 72/200 (36.00%), Postives = 102/200 (51.00%), Query Frame = 3
Query:   90 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEVAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPTS---GFEGD 680
            + K H+NI  IGHVD GK+TTT  +   L      + E F  +              +DK   E+ERGITI+I+  +++T K +   +DAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D       +   + +  EV   L +  Y+ E+ P V  S     EGD
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTTTAAITKVLADTYPELNEAFAFDS-------------IDKAPEEKERGITINISHVEYQTEKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYILVALNKCDMVE---DEEIIELVEMEVRELLAEQDYD-EEAPIVHISALKALEGD 183          
BLAST of FC876174 vs. ExPASy Swiss-Prot
Match: EFTU_CORGB (Elongation factor Tu OS=Corynebacterium glutamicum (strain R) GN=tuf PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.845e-22
Identity = 72/200 (36.00%), Postives = 102/200 (51.00%), Query Frame = 3
Query:   90 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEVAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPTS---GFEGD 680
            + K H+NI  IGHVD GK+TTT  +   L      + E F  +              +DK   E+ERGITI+I+  +++T K +   +DAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D       +   + +  EV   L +  Y+ E+ P V  S     EGD
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTTTAAITKVLADAYPELNEAFAFDS-------------IDKAPEEKERGITINISHVEYQTEKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYILVALNKCDMVE---DEEIIELVEMEVRELLAEQDYD-EEAPIVHISALKALEGD 183          
BLAST of FC876174 vs. ExPASy Swiss-Prot
Match: EFTU_COREF (Elongation factor Tu OS=Corynebacterium efficiens GN=tuf PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.845e-22
Identity = 72/200 (36.00%), Postives = 101/200 (50.50%), Query Frame = 3
Query:   90 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEVAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPTS---GFEGD 680
            + K H+NI  IGHVD GK+TTT  +   L      + E F  +              +DK   E+ERGITI+I+  +++T K +   +DAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D       +   + +  EV   L +  Y+ E  P V  S     EGD
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTTTAAITKVLADAYPELNEAFAFDA-------------IDKAPEEKERGITINISHVEYQTEKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYILVALNKCDMVD---DEEIIELVEMEVRELLAEQDYD-EDAPIVHISALKALEGD 183          
The following BLAST results are available for this feature:
BLAST of FC876174 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_STRP72.845e-2234.80Elongation factor Tu OS=Streptococcus pneumoniae (... [more]
EFTU_STRP42.845e-2234.80Elongation factor Tu OS=Streptococcus pneumoniae s... [more]
EFTU_STRP22.845e-2234.80Elongation factor Tu OS=Streptococcus pneumoniae s... [more]
EFTU_STROR2.845e-2234.80Elongation factor Tu OS=Streptococcus oralis GN=tu... [more]
EFTU_STRGC2.845e-2234.80Elongation factor Tu OS=Streptococcus gordonii (st... [more]
EFTU_RENSM2.845e-2235.00Elongation factor Tu OS=Renibacterium salmoninarum... [more]
EFTU_LACS12.845e-2236.76Elongation factor Tu OS=Lactobacillus salivarius s... [more]
EFTU_CORGL2.845e-2236.00Elongation factor Tu OS=Corynebacterium glutamicum... [more]
EFTU_CORGB2.845e-2236.00Elongation factor Tu OS=Corynebacterium glutamicum... [more]
EFTU_COREF2.845e-2236.00Elongation factor Tu OS=Corynebacterium efficiens ... [more]

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Properties
Property NameValue
Genbank descriptionC32001B11EF DevOvary1 Citrus clementina cDNA clone C32001B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876174 ID=FC876174; Name=FC876174; organism=Citrus clementina; type=EST; length=707bp
GACTCTTTGCCCTCCCTCTTTTCTTGCTTGCTCTGCGGCTAGGTTTCAAT
TGTCTCTTCGAAGTTTCAGTTAATTTAACAGCCATGGGTAAGGAGAAGAC
TCACATCAACATTGTGGTGATTGGCCATGTCGACTCTGGAAAGTCGACCA
CCACCGGACACTTGATCTACAAGCTTGGTGGTATTGACAAGCGTGTGATC
GAGAGGTTCGAGAAGGAAGTTGCTGAGATGAACAAGAGGTCATTCAAGTA
CGCCTGGGTGCTCGACAAGCTCAAGGCTGAGCGTGAACGTGGTATTACCA
TTGATATTGCCTTGTGGAAGTTCGAGACCACCAAGTACTACTGCACCGTC
ATTGATGCTCCCGGACATCGTGACTTTATCAAGAACATGATTACCGGTAC
CTCACAGGCTGACTGTGCCGTCCTTATCATTGACTCCACCACCGGTGGTT
TTGAAGCTGGTATCTCCAAGGATGGTCAGACTCGTGAGCATGCTTTGCTT
GCTTTCACCCTTGGTGTGAAGCAGATGATTTGCTGCTGTAACAAGATGGA
CGCCACCACCCCCAAGTACTCAAAGGCTAGGTACGATGAAATTGTGAAGG
AGGTCTCTTCCTACCTGAAGAAGGTTGGATACAACCCCGAGAAAGTCCCA
TTCGTGCCCACCTCTGGTTTCGAGGGTGACAACATGATTGAGAGGTCTAC
CAACCTT
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