FC876174

Overview
NameFC876174
Unique NameFC876174
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876174 vs. ExPASy Swiss-Prot
Match: EFTU_CHLT3 (Elongation factor Tu OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=tuf PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.716e-22
Identity = 67/192 (34.90%), Postives = 98/192 (51.04%), Query Frame = 3
Query:   90 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEVAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPTS 665
            +EK H+NI  IGHVD GK+T T              I +   E  +  K  F     +DK   E+ERGITI  +  ++ET   +   ID PGH D++KNMITG +Q D A+L++ +T G          QTREH LLA  + V  ++   NK+D   P+  +    E+ + +SSY    G+  + +P +  S
Sbjct:    8 REKPHVNIGTIGHVDHGKTTLTA------------AITKVLSEKGQAQKMDFDE---IDKAPEEKERGITISTSHVEYETPSRHYAHIDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP-------QTREHILLAKQVNVPSIVVFMNKVDIADPELIELVEMELRELLSSY----GFPGDDIPIIQGS 173          
BLAST of FC876174 vs. ExPASy Swiss-Prot
Match: EFTU_CALS8 (Elongation factor Tu OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=tuf PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.716e-22
Identity = 68/195 (34.87%), Postives = 95/195 (48.72%), Query Frame = 3
Query:   90 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEVAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPTSGFE 674
            + K H+NI  IGHVD GK+T T  +                K +A   K  F     +DK   ERERGITI+ A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  + V  ++   NK+D           + +  EV   L K GY  ++VP V  S  +
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTAAIT---------------KVLALKGKAQFMAYDQIDKAPEERERGITINTAHVEYETDARHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVNVPYIVVFLNKVDMVD---DPELIELVEMEVRELLSKYGYPGDEVPIVKGSALK 177          
BLAST of FC876174 vs. ExPASy Swiss-Prot
Match: EFTU_ANATD (Elongation factor Tu OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=tuf PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.716e-22
Identity = 68/195 (34.87%), Postives = 95/195 (48.72%), Query Frame = 3
Query:   90 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEVAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPTSGFE 674
            + K H+NI  IGHVD GK+T T  +                K +A   K  F     +DK   ERERGITI+ A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  + V  ++   NK+D           + +  EV   L K GY  ++VP V  S  +
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTAAIT---------------KVLALKGKAQFMAYDQIDKAPEERERGITINTAHVEYETDARHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVNVPYIVVFLNKVDMVD---DPELIELVEMEVRELLSKYGYPGDEVPIVKGSALK 177          
BLAST of FC876174 vs. ExPASy Swiss-Prot
Match: EFTU_YEAST (Elongation factor Tu, mitochondrial OS=Saccharomyces cerevisiae GN=TUF1 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.854e-22
Identity = 64/192 (33.33%), Postives = 96/192 (50.00%), Query Frame = 3
Query:   81 AMGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEVAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV 656
            A  + K H+NI  IGHVD GK+T T  +                K +A     +F     +DK   ER RGITI  A  ++ET K + + +D PGH D+IKNMITG +Q D A++++ +T G          QTREH LLA  +GV+ ++   NK+D           + +  E+   L + G++ +  P +
Sbjct:   41 AFDRSKPHVNIGTIGHVDHGKTTLTAAIT---------------KTLAAKGGANFLDYAAIDKAPEERARGITISTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAIIVVAATDGQMP-------QTREHLLLARQVGVQHIVVFVNKVDTID---DPEMLELVEMEMRELLNEYGFDGDNAPII 207          
BLAST of FC876174 vs. ExPASy Swiss-Prot
Match: EFTU_STRA5 (Elongation factor Tu OS=Streptococcus agalactiae serotype V GN=tuf PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.854e-22
Identity = 71/204 (34.80%), Postives = 102/204 (50.00%), Query Frame = 3
Query:   90 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEVAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPTS---GFEGDNMIE 692
            + K H+NI  IGHVD GK+T T  +   L            + +     +   YA + D    ERERGITI+ A  ++ET K +   IDAPGH D++KNMITG +Q D A+L++ ST G          QTREH LL+  +GVK +I   NK+D       +   + +  E+   L +  +  + +P +  S     EGD   E
Sbjct:    8 RSKPHVNIGTIGHVDHGKTTLTAAITTVLA-----------RRLPTSVNQPKDYASI-DAAPEERERGITINTAHVEYETEKRHYAHIDAPGHADYVKNMITGAAQMDGAILVVASTDGPMP-------QTREHILLSRQVGVKHLIVFMNKVDLVD---DEELLELVEMEIRDLLSEYDFPGDDLPVIQGSALKALEGDEKYE 189          
BLAST of FC876174 vs. ExPASy Swiss-Prot
Match: EFTU_STRA3 (Elongation factor Tu OS=Streptococcus agalactiae serotype III GN=tuf PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.854e-22
Identity = 71/204 (34.80%), Postives = 102/204 (50.00%), Query Frame = 3
Query:   90 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEVAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPTS---GFEGDNMIE 692
            + K H+NI  IGHVD GK+T T  +   L            + +     +   YA + D    ERERGITI+ A  ++ET K +   IDAPGH D++KNMITG +Q D A+L++ ST G          QTREH LL+  +GVK +I   NK+D       +   + +  E+   L +  +  + +P +  S     EGD   E
Sbjct:    8 RSKPHVNIGTIGHVDHGKTTLTAAITTVLA-----------RRLPTSVNQPKDYASI-DAAPEERERGITINTAHVEYETEKRHYAHIDAPGHADYVKNMITGAAQMDGAILVVASTDGPMP-------QTREHILLSRQVGVKHLIVFMNKVDLVD---DEELLELVEMEIRDLLSEYDFPGDDLPVIQGSALKALEGDEKYE 189          
BLAST of FC876174 vs. ExPASy Swiss-Prot
Match: EFTU_STRA1 (Elongation factor Tu OS=Streptococcus agalactiae serotype Ia GN=tuf PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.854e-22
Identity = 71/204 (34.80%), Postives = 102/204 (50.00%), Query Frame = 3
Query:   90 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEVAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPTS---GFEGDNMIE 692
            + K H+NI  IGHVD GK+T T  +   L            + +     +   YA + D    ERERGITI+ A  ++ET K +   IDAPGH D++KNMITG +Q D A+L++ ST G          QTREH LL+  +GVK +I   NK+D       +   + +  E+   L +  +  + +P +  S     EGD   E
Sbjct:    8 RSKPHVNIGTIGHVDHGKTTLTAAITTVLA-----------RRLPTSVNQPKDYASI-DAAPEERERGITINTAHVEYETEKRHYAHIDAPGHADYVKNMITGAAQMDGAILVVASTDGPMP-------QTREHILLSRQVGVKHLIVFMNKVDLVD---DEELLELVEMEIRDLLSEYDFPGDDLPVIQGSALKALEGDEKYE 189          
BLAST of FC876174 vs. ExPASy Swiss-Prot
Match: EFTU1_PELTS (Elongation factor Tu 1 OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.854e-22
Identity = 64/195 (32.82%), Postives = 99/195 (50.77%), Query Frame = 3
Query:   90 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEVAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPTSGFE 674
            + K H+NI  IGHVD GK+T T  +   L  + K  ++++++               +D    ERERGITI+ A  ++ET K +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK D           D  V+E+ S  +  G   +++P +  S  +
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTAAITMVLATVGKAQVKKYDE---------------IDNAPEERERGITINTAHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPYIVVYLNKADMVDDPELLELVDMEVRELLSTYEFPG---DEIPIITGSALK 177          
BLAST of FC876174 vs. ExPASy Swiss-Prot
Match: CYSN_VIBSL (Sulfate adenylyltransferase subunit 1 OS=Vibrio splendidus (strain LGP32) GN=cysN PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.854e-22
Identity = 67/208 (32.21%), Postives = 103/208 (49.52%), Query Frame = 3
Query:   90 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEVAEMNKRSFK--YAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPTSGFEGDNMIERSTNL 707
            + K+ +  +  G VD GKST  G L++    I +  +     +   +     K   A ++D L+AERE+GITID+A   F T K    + D PGH  + +NM TG S  D AV++ID+  G  +       QTR H+ ++  LG+K  I   NKMD     YS+ R++EI  +   + + +      +  +P S  EG N+   S  L
Sbjct:   22 QHKSMLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAAVHSDSQRVGTTGEKPDLALLVDGLQAEREQGITIDVAYRYFSTQKRKFIIADTPGHEQYTRNMATGASTCDLAVILIDARKGVLD-------QTRRHSFISNLLGLKHFIVAVNKMDLV--DYSQDRFEEIRDQYLEFAENL-EGETNIQILPVSALEGINVAAPSKEL 219          
BLAST of FC876174 vs. ExPASy Swiss-Prot
Match: EFTU_MYCPN (Elongation factor Tu OS=Mycoplasma pneumoniae GN=tuf PE=3 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 6.339e-22
Identity = 66/200 (33.00%), Postives = 101/200 (50.50%), Query Frame = 3
Query:   90 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEVAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPTS---GFEGD 680
            + K H+N+  IGH+D GK+T T  +   L    K    R+++               +DK   E+ RGITI+ A  ++ + K +   +D PGH D+IKNMITG +Q D A+L++ +T        S   QTREH LLA  +GV +M+   NK D  T +  +   + + +EV   L   G++ +  P +  S     EGD
Sbjct:    8 RSKPHVNVGTIGHIDHGKTTLTAAICTVLAKEGKSAATRYDQ---------------IDKAPEEKARGITINSAHVEYSSDKRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSATD-------SVMPQTREHILLARQVGVPRMVVFLNKCDIATDEEVQ---ELVAEEVRDLLTSYGFDGKNTPIIYGSALKALEGD 182          
The following BLAST results are available for this feature:
BLAST of FC876174 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_CHLT33.716e-2234.90Elongation factor Tu OS=Chloroherpeton thalassium ... [more]
EFTU_CALS83.716e-2234.87Elongation factor Tu OS=Caldicellulosiruptor sacch... [more]
EFTU_ANATD3.716e-2234.87Elongation factor Tu OS=Anaerocellum thermophilum ... [more]
EFTU_YEAST4.854e-2233.33Elongation factor Tu, mitochondrial OS=Saccharomyc... [more]
EFTU_STRA54.854e-2234.80Elongation factor Tu OS=Streptococcus agalactiae s... [more]
EFTU_STRA34.854e-2234.80Elongation factor Tu OS=Streptococcus agalactiae s... [more]
EFTU_STRA14.854e-2234.80Elongation factor Tu OS=Streptococcus agalactiae s... [more]
EFTU1_PELTS4.854e-2232.82Elongation factor Tu 1 OS=Pelotomaculum thermoprop... [more]
CYSN_VIBSL4.854e-2232.21Sulfate adenylyltransferase subunit 1 OS=Vibrio sp... [more]
EFTU_MYCPN6.339e-2233.00Elongation factor Tu OS=Mycoplasma pneumoniae GN=t... [more]

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Properties
Property NameValue
Genbank descriptionC32001B11EF DevOvary1 Citrus clementina cDNA clone C32001B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876174 ID=FC876174; Name=FC876174; organism=Citrus clementina; type=EST; length=707bp
GACTCTTTGCCCTCCCTCTTTTCTTGCTTGCTCTGCGGCTAGGTTTCAAT
TGTCTCTTCGAAGTTTCAGTTAATTTAACAGCCATGGGTAAGGAGAAGAC
TCACATCAACATTGTGGTGATTGGCCATGTCGACTCTGGAAAGTCGACCA
CCACCGGACACTTGATCTACAAGCTTGGTGGTATTGACAAGCGTGTGATC
GAGAGGTTCGAGAAGGAAGTTGCTGAGATGAACAAGAGGTCATTCAAGTA
CGCCTGGGTGCTCGACAAGCTCAAGGCTGAGCGTGAACGTGGTATTACCA
TTGATATTGCCTTGTGGAAGTTCGAGACCACCAAGTACTACTGCACCGTC
ATTGATGCTCCCGGACATCGTGACTTTATCAAGAACATGATTACCGGTAC
CTCACAGGCTGACTGTGCCGTCCTTATCATTGACTCCACCACCGGTGGTT
TTGAAGCTGGTATCTCCAAGGATGGTCAGACTCGTGAGCATGCTTTGCTT
GCTTTCACCCTTGGTGTGAAGCAGATGATTTGCTGCTGTAACAAGATGGA
CGCCACCACCCCCAAGTACTCAAAGGCTAGGTACGATGAAATTGTGAAGG
AGGTCTCTTCCTACCTGAAGAAGGTTGGATACAACCCCGAGAAAGTCCCA
TTCGTGCCCACCTCTGGTTTCGAGGGTGACAACATGATTGAGAGGTCTAC
CAACCTT
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