FC876174

Overview
NameFC876174
Unique NameFC876174
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9339 contig Ccv1_Contig9339:1..707. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876174 vs. ExPASy Swiss-Prot
Match: EFTU_ANADF (Elongation factor Tu OS=Anaeromyxobacter sp. (strain Fw109-5) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.339e-22
Identity = 69/200 (34.50%), Postives = 95/200 (47.50%), Query Frame = 3
Query:   90 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEVAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPTS---GFEGD 680
            + K H+N+  IGHVD GK+T T  +                K  A   +  F     +DK   ERERGITI  A  ++ T K +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  M+   NK+D       K   D +  EV   L +  +   ++P V  S     EGD
Sbjct:    8 RNKPHVNVGTIGHVDHGKTTLTAAIT---------------KYCATQGRAQFMAYDQIDKAPEERERGITIATAHVEYSTDKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPYMVVFLNKVDMVD---DKELLDLVELEVRELLSEYEFPGNEIPIVKGSALKALEGD 182          
BLAST of FC876174 vs. ExPASy Swiss-Prot
Match: EFTU2_STRAW (Elongation factor Tu 2 OS=Streptomyces avermitilis GN=tuf2 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.339e-22
Identity = 71/204 (34.80%), Postives = 100/204 (49.02%), Query Frame = 3
Query:   78 TAMGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEVAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPTSG---FEGD 680
            TA  + K H+NI  +GHVD GK+T T  +                K +AE    +F     +D+   E  RGITI+IA  ++ET   +   +D PGH D++KNM+TG +Q D A+L++ +  G          QT EH LLA  +GV  ++   NK DA   + +    D +  EV   L   GY  + VP V  SG    EGD
Sbjct:    4 TAYVRTKPHLNIGTMGHVDHGKTTLTAAIT---------------KVLAERGSGTFVPFDRIDRAPEEAARGITINIAHVEYETDTRHYAHVDMPGHADYVKNMVTGAAQLDGAILVVSALDGIMP-------QTAEHVLLARQVGVDHIVVALNKADAGDEELT----DLVELEVRELLTAHGYGGDSVPVVRVSGLKALEGD 181          
BLAST of FC876174 vs. ExPASy Swiss-Prot
Match: EFTU2_MYXXD (Elongation factor Tu 2 OS=Myxococcus xanthus (strain DK 1622) GN=tuf2 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.339e-22
Identity = 66/200 (33.00%), Postives = 101/200 (50.50%), Query Frame = 3
Query:   90 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEVAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPTS---GFEGD 680
            + K H+NI  IGHVD GK++ T  +                K +A+    +F    ++DK   ERERGITI  +  +++T+  +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK+D       +   + +  EV   LKK  +  + +P +P S     EGD
Sbjct:    8 RNKPHVNIGTIGHVDHGKTSLTAAIT---------------KVLAKTGGATFLAYDLIDKAPEERERGITISTSHVEYQTSNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPYIVVFLNKVDMLDDPELR---ELVEMEVRDLLKKYEFPGDDIPIIPGSALKALEGD 182          
BLAST of FC876174 vs. ExPASy Swiss-Prot
Match: EFTU1_MYXXD (Elongation factor Tu 1 OS=Myxococcus xanthus (strain DK 1622) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.339e-22
Identity = 66/200 (33.00%), Postives = 101/200 (50.50%), Query Frame = 3
Query:   90 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEVAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPTS---GFEGD 680
            + K H+NI  IGHVD GK++ T  +                K +A+    +F    ++DK   ERERGITI  +  +++T+  +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK+D       +   + +  EV   LKK  +  + +P +P S     EGD
Sbjct:    8 RNKPHVNIGTIGHVDHGKTSLTAAIT---------------KVLAKTGGATFLAYDLIDKAPEERERGITISTSHVEYQTSNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPYIVVFLNKVDMLDDPELR---ELVEMEVRDLLKKYEFPGDDIPIIPGSALKALEGD 182          
BLAST of FC876174 vs. ExPASy Swiss-Prot
Match: CYSN_METPB (Sulfate adenylyltransferase subunit 1 OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=cysN PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.339e-22
Identity = 68/209 (32.54%), Postives = 107/209 (51.20%), Query Frame = 3
Query:   90 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEVAEMNKRSFKY---------AWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPTSGFEGDNMI 689
            + K  +  +  G VD GKST  G L++    I       F+ +V  + + S K+         A ++D L+AERE+GITID+A   F T +    V D PGH  + +NM TG S AD AV+++D+  G          QTR HALL   LG+ ++    NKMD     +S+ ++D I+    ++   + ++  +V  +P S   GDN++
Sbjct:   20 QSKEVLRFITCGSVDDGKSTLIGRLLHDTKQI-------FDDQVTALQRDSRKHGTQGAEVDLALLVDGLQAEREQGITIDVAYRFFSTDRRSFIVADTPGHEQYTRNMATGASTADVAVILVDARHG-------LTRQTRRHALLVSLLGIHRVALAINKMDLV--GWSQDKFDAILSGFQAFAAPLNFS--EVRAIPLSAKNGDNVV 210          
BLAST of FC876174 vs. ExPASy Swiss-Prot
Match: EFTU_STIAU (Elongation factor Tu OS=Stigmatella aurantiaca GN=tuf PE=3 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 8.279e-22
Identity = 67/200 (33.50%), Postives = 99/200 (49.50%), Query Frame = 3
Query:   90 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEVAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPTS---GFEGD 680
            + K H+NI  IGHVD GK++ T  +                K +A+    +F     +DK   ERERGITI  A  +++T   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK+D       +   + +  EV   LKK  +  + +P +P S     EGD
Sbjct:    8 RNKPHVNIGTIGHVDHGKTSLTAAIT---------------KVLAKTGGATFLAYDQIDKAPEERERGITISTAHVEYQTKNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPYIVVFLNKVDMLDDPELR---ELVEMEVRDLLKKYEFPGDSIPIIPGSALKALEGD 182          
BLAST of FC876174 vs. ExPASy Swiss-Prot
Match: EFTU_SPIAU (Elongation factor Tu (Fragment) OS=Spirochaeta aurantia GN=tuf PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.279e-22
Identity = 66/195 (33.85%), Postives = 99/195 (50.77%), Query Frame = 3
Query:   90 KEKTHINIVVIGHVDSGKSTTTGHL-IYKLGGIDKRVIERFEKEVAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPTSGF 671
            + K HIN+  IGHVD GK+T T  L +Y       +V+   +                +D    E+ERGITI+    ++E+   +   +D PGH D++KNMITG +Q D A+L++ + +G        + QTREH LLA  +GV  ++   NKMD   P+      + +  EV   L   G++ EK PF+  S F
Sbjct:    8 RSKPHINVGAIGHVDHGKTTLTAALTMYGAKKHGGKVMNYDD----------------IDNAPEEKERGITINTRHVEYESAARHYAHVDCPGHADYVKNMITGAAQMDGAILLVAADSG-------PEPQTREHILLAKQVGVANLVIFLNKMDLADPEL----VELVEMEVRDLLNLYGFDGEKTPFIRGSAF 175          
BLAST of FC876174 vs. ExPASy Swiss-Prot
Match: EFTU_PROA2 (Elongation factor Tu OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=tuf PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.279e-22
Identity = 67/178 (37.64%), Postives = 94/178 (52.81%), Query Frame = 3
Query:   81 AMGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEVAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSY 614
            A  +EK H+NI  IGHVD GK+T T  +   L           +K +A++ +        +DK   ERERGITI  A  ++ET K +   ID PGH D+IKNMITG +Q D A+L++  T G          QTREH LLA  + V  ++   NK+D   P+  +    E+ + +S Y
Sbjct:    5 AYKREKPHVNIGTIGHVDHGKTTLTAAITTVLA----------KKGMAQLREFGD-----IDKAPEERERGITISTAHVEYETDKRHYAHIDCPGHADYIKNMITGAAQMDGAILVVAGTDGPMP-------QTREHILLARQVNVPALVVFLNKVDIADPELIELVELELRELLSEY 160          
BLAST of FC876174 vs. ExPASy Swiss-Prot
Match: EFTU_DICDI (Elongation factor Tu, mitochondrial OS=Dictyostelium discoideum GN=tufm PE=1 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 8.279e-22
Identity = 65/190 (34.21%), Postives = 99/190 (52.11%), Query Frame = 3
Query:   90 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEVAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPEKVPFV 656
            + K H+N+  IGHVD GK+T T  +                K +++    +FK    +DK   E+ RGITI  +  ++E+   +   ID PGH+ +IKNMITG +Q D A+L++ +  G  E       QTREH +L+  +G+  ++   NKMD   P        EIV+ EV   L + G+N ++ PFV
Sbjct:   34 RTKPHVNVGTIGHVDHGKTTLTAAIT---------------KTLSDRGLANFKSYAQIDKSPEEKARGITITASHIEYESATRHYAHIDCPGHQHYIKNMITGAAQMDGAILVVSAPDGPQE-------QTREHIILSREVGIPALVVFLNKMDNADPDLV-----EIVEMEVRELLSQYGFNGDETPFV 196          
BLAST of FC876174 vs. ExPASy Swiss-Prot
Match: EFTU_CHICK (Elongation factor Tu, mitochondrial (Fragment) OS=Gallus gallus GN=TUFM PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.279e-22
Identity = 66/193 (34.20%), Postives = 99/193 (51.30%), Query Frame = 3
Query:   81 AMGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEVAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPEKVPFV 656
            A  +++ H+N+  IGHVD GK+T T  +   L        +R+E                +DK   ER RGITI+ A  ++ T + +    D PGH D++KNMITGT+  D  +L++ +T G          QTREH LLA  +GV+ ++   NK DA     S A    +V+ E+   L ++GY+ E+ P V
Sbjct:   40 AFVRDRPHVNVGTIGHVDHGKTTLTAAITKVLSESGGARFQRYED---------------IDKAPEERARGITINAAHVEYSTARRHYAHTDCPGHADYVKNMITGTAPLDGCILVVAATDGQMP-------QTREHLLLARQVGVRHVVVYVNKADAV----SDAELLPLVELELRELLAEMGYDAERTPVV 206          
The following BLAST results are available for this feature:
BLAST of FC876174 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_ANADF6.339e-2234.50Elongation factor Tu OS=Anaeromyxobacter sp. (stra... [more]
EFTU2_STRAW6.339e-2234.80Elongation factor Tu 2 OS=Streptomyces avermitilis... [more]
EFTU2_MYXXD6.339e-2233.00Elongation factor Tu 2 OS=Myxococcus xanthus (stra... [more]
EFTU1_MYXXD6.339e-2233.00Elongation factor Tu 1 OS=Myxococcus xanthus (stra... [more]
CYSN_METPB6.339e-2232.54Sulfate adenylyltransferase subunit 1 OS=Methyloba... [more]
EFTU_STIAU8.279e-2233.50Elongation factor Tu OS=Stigmatella aurantiaca GN=... [more]
EFTU_SPIAU8.279e-2233.85Elongation factor Tu (Fragment) OS=Spirochaeta aur... [more]
EFTU_PROA28.279e-2237.64Elongation factor Tu OS=Prosthecochloris aestuarii... [more]
EFTU_DICDI8.279e-2234.21Elongation factor Tu, mitochondrial OS=Dictyosteli... [more]
EFTU_CHICK8.279e-2234.20Elongation factor Tu, mitochondrial (Fragment) OS=... [more]

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Properties
Property NameValue
Genbank descriptionC32001B11EF DevOvary1 Citrus clementina cDNA clone C32001B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876174 ID=FC876174; Name=FC876174; organism=Citrus clementina; type=EST; length=707bp
GACTCTTTGCCCTCCCTCTTTTCTTGCTTGCTCTGCGGCTAGGTTTCAAT
TGTCTCTTCGAAGTTTCAGTTAATTTAACAGCCATGGGTAAGGAGAAGAC
TCACATCAACATTGTGGTGATTGGCCATGTCGACTCTGGAAAGTCGACCA
CCACCGGACACTTGATCTACAAGCTTGGTGGTATTGACAAGCGTGTGATC
GAGAGGTTCGAGAAGGAAGTTGCTGAGATGAACAAGAGGTCATTCAAGTA
CGCCTGGGTGCTCGACAAGCTCAAGGCTGAGCGTGAACGTGGTATTACCA
TTGATATTGCCTTGTGGAAGTTCGAGACCACCAAGTACTACTGCACCGTC
ATTGATGCTCCCGGACATCGTGACTTTATCAAGAACATGATTACCGGTAC
CTCACAGGCTGACTGTGCCGTCCTTATCATTGACTCCACCACCGGTGGTT
TTGAAGCTGGTATCTCCAAGGATGGTCAGACTCGTGAGCATGCTTTGCTT
GCTTTCACCCTTGGTGTGAAGCAGATGATTTGCTGCTGTAACAAGATGGA
CGCCACCACCCCCAAGTACTCAAAGGCTAGGTACGATGAAATTGTGAAGG
AGGTCTCTTCCTACCTGAAGAAGGTTGGATACAACCCCGAGAAAGTCCCA
TTCGTGCCCACCTCTGGTTTCGAGGGTGACAACATGATTGAGAGGTCTAC
CAACCTT
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