FC876174

Overview
NameFC876174
Unique NameFC876174
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9339 contig Ccv1_Contig9339:1..707. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876174 vs. ExPASy Swiss-Prot
Match: EFTU_AQUPY (Elongation factor Tu OS=Aquifex pyrophilus GN=tuf PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.279e-22
Identity = 70/205 (34.15%), Postives = 102/205 (49.76%), Query Frame = 3
Query:   90 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEVAEMNK-RSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPTSGFEGDNMIERST 701
            + K H+N+  IGHVD GKST T  +   L              + E  K + FKY  + DK   E+ERGITI+I   ++ET K +   +D PGH D+IKNMITG +Q D A+L++ +  G          QTREH LLA  + V  ++   NK D       +   + +  EV   L K  Y  ++VP +  S       +E+++
Sbjct:    8 RTKEHVNVGTIGHVDHGKSTLTSAITCVLAA-----------GLVEGGKAKCFKYEEI-DKAPEEKERGITINITHVEYETAKRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMP-------QTREHVLLARQVNVPYIVVFMNKCDMVD---DEELLELVELEVRELLSKYEYPGDEVPVIRGSALGALQELEQNS 190          
BLAST of FC876174 vs. ExPASy Swiss-Prot
Match: EFTU_AQUAE (Elongation factor Tu OS=Aquifex aeolicus GN=tufA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.279e-22
Identity = 70/205 (34.15%), Postives = 102/205 (49.76%), Query Frame = 3
Query:   90 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEVAEMNK-RSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPTSGFEGDNMIERST 701
            + K H+N+  IGHVD GKST T  +   L              + E  K + FKY  + DK   E+ERGITI+I   ++ET K +   +D PGH D+IKNMITG +Q D A+L++ +  G          QTREH LLA  + V  ++   NK D       +   + +  EV   L K  Y  ++VP +  S       +E+++
Sbjct:    8 RTKEHVNVGTIGHVDHGKSTLTSAITCVLAA-----------GLVEGGKAKCFKYEEI-DKAPEEKERGITINITHVEYETAKRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMP-------QTREHVLLARQVNVPYIVVFMNKCDMVD---DEELLELVELEVRELLSKYEYPGDEVPVIRGSALGALQELEQNS 190          
BLAST of FC876174 vs. ExPASy Swiss-Prot
Match: EFTU_APPPP (Elongation factor Tu OS=Apple proliferation phytoplasma GN=tuf PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.279e-22
Identity = 67/196 (34.18%), Postives = 102/196 (52.04%), Query Frame = 3
Query:   90 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEVAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPEKVPFVPTSGFE 674
            ++K H+N+  IGHVD GK+T T  +   L            K +AE   +S+     +DK K E+ERGITI+     +ET K +   +D PGH D++KNMITG +Q D  +L++ +  G          QTREH LLA  +G+ ++I   NK D       +  +  +V+ EV   L +  ++ +K PFV  S  +
Sbjct:    8 RDKVHVNVGTIGHVDHGKTTLTAAITKILS----------TKGLAE--NKSYDQ---IDKTKEEKERGITINTTHVSYETVKRHYAHVDCPGHADYVKNMITGAAQMDAGILVVSAYHGVMP-------QTREHVLLAGQVGISKLIVFLNKCDLV----KEEEWIHLVEMEVRELLNEYKFDGDKTPFVRGSALK 177          
BLAST of FC876174 vs. ExPASy Swiss-Prot
Match: EFTU_ANAPZ (Elongation factor Tu OS=Anaplasma phagocytophilum (strain HZ) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.279e-22
Identity = 70/191 (36.65%), Postives = 97/191 (50.79%), Query Frame = 3
Query:   96 KTHINIVVIGHVDSGKSTTTGHLIY----KLGGIDKRVIERFEKEVAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV 656
            K HIN+  IGHVD GK+T T  L      KL G +K V                KY  + DK   E+ RGITI  A  ++ET   +   +D PGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GVK ++   NK D    +   +  D  ++E+   L + GY+ + +  V
Sbjct:    6 KPHINVGTIGHVDHGKTTLTAALTTVLARKLSGANKVV----------------KYDEI-DKAPEEKARGITISTAHVEYETEGRHYAHVDCPGHADYIKNMITGAAQMDVAILVVSATDGAMP-------QTREHILLAKQVGVKDIVVWINKCDVVEDEEMLSLVDMEIREL---LSQYGYDGDSIDAV 169          
BLAST of FC876174 vs. ExPASy Swiss-Prot
Match: EFTU_ACIBL (Elongation factor Tu OS=Acidobacteria bacterium (strain Ellin345) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.279e-22
Identity = 67/189 (35.45%), Postives = 97/189 (51.32%), Query Frame = 3
Query:   90 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEVAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV 656
            + K H+N+  IGH+D GK+T T  +         +V+ +   ++A    RSF     +D    ERERGITI  A  ++ET   +   +D PGH D+IKNMITG +Q D A+L++ +T G          QT+EH LLA  +GV  ++   NK DA          D +  EV   L K G+  + +P V
Sbjct:    8 RSKPHVNVGTIGHIDHGKTTLTAAIT--------KVLSKHNPKIAF---RSFDS---IDNAPEERERGITIATAHVEYETANRHYAHVDCPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTKEHVLLARQVGVPYVVVFLNKCDAVE---DAELIDLVEMEVRELLNKYGFPGDDLPVV 172          
BLAST of FC876174 vs. ExPASy Swiss-Prot
Match: EFTU_THET2 (Elongation factor Tu OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.081e-21
Identity = 66/189 (34.92%), Postives = 96/189 (50.79%), Query Frame = 3
Query:   90 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEVAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV 656
            + K H+N+  IGHVD GK+T T  L Y     +  V      EV +  +        +DK   ER RGITI+ A  ++ET K + + +D PGH D+IKNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK+D           D +  EV   L +  +  ++VP +
Sbjct:    8 RTKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNV------EVKDYGE--------IDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPYIVVFMNKVDMVD---DPELLDLVEMEVRDLLNQYEFPGDEVPVI 172          
BLAST of FC876174 vs. ExPASy Swiss-Prot
Match: EFTU_THEM4 (Elongation factor Tu OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=tuf PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.081e-21
Identity = 67/195 (34.36%), Postives = 96/195 (49.23%), Query Frame = 3
Query:   90 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEVAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPTSGFE 674
            + K H+N+  IGH+D GK+T T  +   L    +     +E+               +DK   E+ERGITI+IA  ++ET K +   ID PGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  + V  MI   NK D       +   D +  EV   L K  +  + +P +  S  +
Sbjct:    8 RSKPHLNVGTIGHIDHGKTTLTAAITKYLSLFGRADYTPYEQ---------------IDKAPEEKERGITINIAHIEYETEKRHYAHIDCPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVNVPAMIVFINKTDMVD---DEELVDLVEMEVRELLNKYEFPGDDLPVIRGSALK 177          
BLAST of FC876174 vs. ExPASy Swiss-Prot
Match: EFTU_STRPM (Elongation factor Tu OS=Streptococcus pyogenes serotype M28 GN=tuf PE=3 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.081e-21
Identity = 70/204 (34.31%), Postives = 101/204 (49.51%), Query Frame = 3
Query:   90 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEVAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPTS---GFEGDNMIE 692
            + K H+NI  IGHVD GK+T T  +   L            + +     +   YA + D    ERERGITI+ A  ++ET   +   IDAPGH D++KNMITG +Q D A+L++ ST G          QTREH LL+  +GVK +I   NK+D       +   + +  E+   L +  +  + +P +  S     EGD   E
Sbjct:    8 RSKPHVNIGTIGHVDHGKTTLTAAITTVLA-----------RRLPSSVNQPKDYASI-DAAPEERERGITINTAHVEYETATRHYAHIDAPGHADYVKNMITGAAQMDGAILVVASTDGPMP-------QTREHILLSRQVGVKHLIVFMNKVDLVD---DEELLELVEMEIRDLLSEYDFPGDDLPVIQGSALKALEGDTKFE 189          
BLAST of FC876174 vs. ExPASy Swiss-Prot
Match: EFTU_STRPG (Elongation factor Tu OS=Streptococcus pyogenes serotype M5 (strain Manfredo) GN=tuf PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.081e-21
Identity = 70/204 (34.31%), Postives = 101/204 (49.51%), Query Frame = 3
Query:   90 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEVAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPTS---GFEGDNMIE 692
            + K H+NI  IGHVD GK+T T  +   L            + +     +   YA + D    ERERGITI+ A  ++ET   +   IDAPGH D++KNMITG +Q D A+L++ ST G          QTREH LL+  +GVK +I   NK+D       +   + +  E+   L +  +  + +P +  S     EGD   E
Sbjct:    8 RSKPHVNIGTIGHVDHGKTTLTAAITTVLA-----------RRLPSSVNQPKDYASI-DAAPEERERGITINTAHVEYETATRHYAHIDAPGHADYVKNMITGAAQMDGAILVVASTDGPMP-------QTREHILLSRQVGVKHLIVFMNKVDLVD---DEELLELVEMEIRDLLSEYDFPGDDLPVIQGSALKALEGDTKFE 189          
BLAST of FC876174 vs. ExPASy Swiss-Prot
Match: EFTU_STRPF (Elongation factor Tu OS=Streptococcus pyogenes serotype M4 (strain MGAS10750) GN=tuf PE=3 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.081e-21
Identity = 70/204 (34.31%), Postives = 101/204 (49.51%), Query Frame = 3
Query:   90 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEVAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPTS---GFEGDNMIE 692
            + K H+NI  IGHVD GK+T T  +   L            + +     +   YA + D    ERERGITI+ A  ++ET   +   IDAPGH D++KNMITG +Q D A+L++ ST G          QTREH LL+  +GVK +I   NK+D       +   + +  E+   L +  +  + +P +  S     EGD   E
Sbjct:    8 RSKPHVNIGTIGHVDHGKTTLTAAITTVLA-----------RRLPSSVNQPKDYASI-DAAPEERERGITINTAHVEYETATRHYAHIDAPGHADYVKNMITGAAQMDGAILVVASTDGPMP-------QTREHILLSRQVGVKHLIVFMNKVDLVD---DEELLELVEMEIRDLLSEYDFPGDDLPVIQGSALKALEGDTKFE 189          
The following BLAST results are available for this feature:
BLAST of FC876174 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_AQUPY8.279e-2234.15Elongation factor Tu OS=Aquifex pyrophilus GN=tuf ... [more]
EFTU_AQUAE8.279e-2234.15Elongation factor Tu OS=Aquifex aeolicus GN=tufA P... [more]
EFTU_APPPP8.279e-2234.18Elongation factor Tu OS=Apple proliferation phytop... [more]
EFTU_ANAPZ8.279e-2236.65Elongation factor Tu OS=Anaplasma phagocytophilum ... [more]
EFTU_ACIBL8.279e-2235.45Elongation factor Tu OS=Acidobacteria bacterium (s... [more]
EFTU_THET21.081e-2134.92Elongation factor Tu OS=Thermus thermophilus (stra... [more]
EFTU_THEM41.081e-2134.36Elongation factor Tu OS=Thermosipho melanesiensis ... [more]
EFTU_STRPM1.081e-2134.31Elongation factor Tu OS=Streptococcus pyogenes ser... [more]
EFTU_STRPG1.081e-2134.31Elongation factor Tu OS=Streptococcus pyogenes ser... [more]
EFTU_STRPF1.081e-2134.31Elongation factor Tu OS=Streptococcus pyogenes ser... [more]

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Properties
Property NameValue
Genbank descriptionC32001B11EF DevOvary1 Citrus clementina cDNA clone C32001B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876174 ID=FC876174; Name=FC876174; organism=Citrus clementina; type=EST; length=707bp
GACTCTTTGCCCTCCCTCTTTTCTTGCTTGCTCTGCGGCTAGGTTTCAAT
TGTCTCTTCGAAGTTTCAGTTAATTTAACAGCCATGGGTAAGGAGAAGAC
TCACATCAACATTGTGGTGATTGGCCATGTCGACTCTGGAAAGTCGACCA
CCACCGGACACTTGATCTACAAGCTTGGTGGTATTGACAAGCGTGTGATC
GAGAGGTTCGAGAAGGAAGTTGCTGAGATGAACAAGAGGTCATTCAAGTA
CGCCTGGGTGCTCGACAAGCTCAAGGCTGAGCGTGAACGTGGTATTACCA
TTGATATTGCCTTGTGGAAGTTCGAGACCACCAAGTACTACTGCACCGTC
ATTGATGCTCCCGGACATCGTGACTTTATCAAGAACATGATTACCGGTAC
CTCACAGGCTGACTGTGCCGTCCTTATCATTGACTCCACCACCGGTGGTT
TTGAAGCTGGTATCTCCAAGGATGGTCAGACTCGTGAGCATGCTTTGCTT
GCTTTCACCCTTGGTGTGAAGCAGATGATTTGCTGCTGTAACAAGATGGA
CGCCACCACCCCCAAGTACTCAAAGGCTAGGTACGATGAAATTGTGAAGG
AGGTCTCTTCCTACCTGAAGAAGGTTGGATACAACCCCGAGAAAGTCCCA
TTCGTGCCCACCTCTGGTTTCGAGGGTGACAACATGATTGAGAGGTCTAC
CAACCTT
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