FC876174

Overview
NameFC876174
Unique NameFC876174
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9339 contig Ccv1_Contig9339:1..707. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876174 vs. ExPASy Swiss-Prot
Match: EFTU_CYAPA (Elongation factor Tu, cyanelle OS=Cyanophora paradoxa GN=tufA PE=3 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.081e-21
Identity = 67/191 (35.08%), Postives = 97/191 (50.79%), Query Frame = 3
Query:   96 KTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEVAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPEKVPFVPTS 665
            K H+NI  IGHVD GK+T T  +   L    K    ++++               +D    E+ RGITI+ A  ++ET K +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  M+   NK D    +   A   E+V+ EV   L K  +  +++PFV  S
Sbjct:   10 KPHVNIGTIGHVDHGKTTLTAAITTALASQGKGKARKYDE---------------IDAAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLAKQVGVPNMVVFLNKED----QIDDADLLELVELEVRELLSKYDFPGDQIPFVSGS 174          
BLAST of FC876174 vs. ExPASy Swiss-Prot
Match: EFTU_CHLPB (Elongation factor Tu OS=Chlorobium phaeobacteroides (strain BS1) GN=tuf PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.081e-21
Identity = 69/209 (33.01%), Postives = 100/209 (47.85%), Query Frame = 3
Query:   81 AMGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEVAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPTS---GFEGDNMIERS 698
            A  ++K H+NI  IGHVD GK+T T  +   L       +  F                 +DK   ERERGITI  A  +++T K +   ID PGH D+IKNMITG +Q D A+L++  T G          QTREH LLA  + V  ++   NK+D   P+      + +  E+   L +  +  + +P +  S     EGD   E++
Sbjct:    5 AYKRDKPHVNIGTIGHVDHGKTTLTAAITSVLAKAGNAEMREFGD---------------IDKAPEERERGITISTAHVEYQTEKRHYAHIDCPGHADYIKNMITGAAQMDGAILVVAGTDGPMP-------QTREHILLARQVNVPALVVFLNKVDIADPEL----LELVELELRELLTEYDFPGDDIPIIKGSALKALEGDAEAEKA 187          
BLAST of FC876174 vs. ExPASy Swiss-Prot
Match: EFTU_BRELN (Elongation factor Tu OS=Brevibacterium linens GN=tuf PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.081e-21
Identity = 68/201 (33.83%), Postives = 106/201 (52.74%), Query Frame = 3
Query:   90 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEVAEMNK-RSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPTS---GFEGD 680
            + K H+NI  IGHVD GK+T T         I K + +++     ++N+ R+F     +D    E+ERGITI+++  +++T K +   +DAPGH D++KNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D       +   + +  EV   L    ++ +  P +P S     EGD
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTA-------AITKVLADQYP----DLNEARAFDQ---VDNAPEEKERGITINVSHVEYQTEKRHYAHVDAPGHADYVKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYIVVALNKSDMVD---DEELLELVEFEVRDLLSSQDFDGDNAPVIPVSALKALEGD 184          
BLAST of FC876174 vs. ExPASy Swiss-Prot
Match: EFTU_BORRA (Elongation factor Tu OS=Borrelia recurrentis (strain A1) GN=tuf PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.081e-21
Identity = 64/194 (32.99%), Postives = 101/194 (52.06%), Query Frame = 3
Query:   90 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEVAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPTSGF 671
            + K H+N+  IGHVD GK+T T  +      ++K             + ++ KY  + D    E+ RGITI+    ++ET   +   +D PGH D+IKNMITG +Q D A+L++ + +G        + QT+EH LLA  +G+K++I   NK+D   P+      + +  EV   ++K G+ P   P V  S F
Sbjct:    8 RTKPHMNVGTIGHVDHGKTTLTAAISIYCSKVNK-------------DAKALKYEDI-DNAPEEKARGITINARHIEYETANRHYAHVDCPGHADYIKNMITGAAQMDAAILLVAADSGA-------EPQTKEHLLLAQRMGIKKIIVFLNKLDLADPEL----VELVEVEVLELVEKYGF-PSDTPIVKGSAF 175          
BLAST of FC876174 vs. ExPASy Swiss-Prot
Match: EFTU_BORDL (Elongation factor Tu OS=Borrelia duttonii (strain Ly) GN=tuf PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.081e-21
Identity = 64/194 (32.99%), Postives = 101/194 (52.06%), Query Frame = 3
Query:   90 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEVAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPTSGF 671
            + K H+N+  IGHVD GK+T T  +      ++K             + ++ KY  + D    E+ RGITI+    ++ET   +   +D PGH D+IKNMITG +Q D A+L++ + +G        + QT+EH LLA  +G+K++I   NK+D   P+      + +  EV   ++K G+ P   P V  S F
Sbjct:    8 RTKPHMNVGTIGHVDHGKTTLTAAISIYCSKVNK-------------DAKALKYEDI-DNAPEEKARGITINARHIEYETANRHYAHVDCPGHADYIKNMITGAAQMDAAILLVAADSGA-------EPQTKEHLLLAQRMGIKKIIVFLNKLDLADPEL----VELVEVEVLELVEKYGF-PSDTPIVKGSAF 175          
BLAST of FC876174 vs. ExPASy Swiss-Prot
Match: EFTU_ANADE (Elongation factor Tu OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.081e-21
Identity = 68/200 (34.00%), Postives = 97/200 (48.50%), Query Frame = 3
Query:   90 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEVAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPTS---GFEGD 680
            + K H+N+  IGHVD GK+T T  +                K +A+     F     +DK   ERERGITI  A  +++T K +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK+D       K   D +  EV   L +  +   ++P V  S     EGD
Sbjct:    8 RSKPHVNVGTIGHVDHGKTTLTAAIT---------------KVLAQKGGAQFLAYDQIDKAPEERERGITIATAHVEYQTEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPYIVVFLNKVDMVD---DKELLDLVELEVRELLSEYDFPGNEIPIVKGSALKALEGD 182          
BLAST of FC876174 vs. ExPASy Swiss-Prot
Match: CYSN_METC4 (Sulfate adenylyltransferase subunit 1 OS=Methylobacterium chloromethanicum (strain CM4 / NCIMB 13688) GN=cysN PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.081e-21
Identity = 67/209 (32.06%), Postives = 107/209 (51.20%), Query Frame = 3
Query:   90 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEVAEMNKRSFK---------YAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPTSGFEGDNMI 689
            + K  +  +  G VD GKST  G L++    I       F+ +V  + + S K         +A ++D L+AERE+GITID+A   F T +    V D PGH  + +NM TG S AD AV+++D+  G          Q+R HALL   LG++++    NKMD     +S+ +++ IV    ++   + +   +V  +P S   GDN++
Sbjct:   20 QNKEVLRFITCGSVDDGKSTLIGRLLHDTKQI-------FDDQVTALQRDSRKHGTQGGEVDFALLVDGLQAEREQGITIDVAYRFFSTDRRSFIVADTPGHEQYTRNMATGASTADLAVILVDARHG-------LTRQSRRHALLVSLLGIRRVALAINKMDLV--GWSQDKFEAIVSGFQAFAAPLNFT--EVRAIPLSAKNGDNVV 210          
BLAST of FC876174 vs. ExPASy Swiss-Prot
Match: EFTU_SYNJA (Elongation factor Tu OS=Synechococcus sp. (strain JA-3-3Ab) GN=tuf PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.412e-21
Identity = 59/195 (30.26%), Postives = 98/195 (50.26%), Query Frame = 3
Query:   90 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEVAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPTSGFE 674
            + K H+N+  IGHVD GK+T T  +   L  + +   +R+++               +D    ER RGITI+ A  +++T K +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK+D       +   + +  E+   L K  +  +++P +  S  +
Sbjct:    8 RTKPHVNVGTIGHVDHGKTTLTAAITMTLAALGQATAKRYDE---------------IDAAPEERARGITINTAHVEYQTEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPSLVVFLNKVDMVD---DEELLELVELEIRELLSKYDFPGDEIPIIRGSALK 177          
BLAST of FC876174 vs. ExPASy Swiss-Prot
Match: EFTU_LACH4 (Elongation factor Tu OS=Lactobacillus helveticus (strain DPC 4571) GN=tuf PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.412e-21
Identity = 73/200 (36.50%), Postives = 99/200 (49.50%), Query Frame = 3
Query:   90 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEVAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPTS---GFEGD 680
            + K H+NI  IGHVD GK+T T  +   L           EK +A+    S      +D    E+ERGITI+ A  ++ET K +   +DAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D           D +  EV   L +  Y  + +P V  S     EGD
Sbjct:    9 RTKPHVNIGTIGHVDHGKTTLTAAITTVLA----------EKGLAKAEDYS-----QIDAAPEEKERGITINTAHVEYETEKRHYAHMDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHILLARQVGVNYIVVFLNKCDLVD---DPELIDLVEMEVRDLLTEYDYPGDDIPVVRGSALKALEGD 183          
BLAST of FC876174 vs. ExPASy Swiss-Prot
Match: EFTU_LACBA (Elongation factor Tu OS=Lactobacillus brevis (strain ATCC 367 / JCM 1170) GN=tuf PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.412e-21
Identity = 74/205 (36.10%), Postives = 102/205 (49.76%), Query Frame = 3
Query:   90 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEVAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPTS---GFEGDNMIER 695
            + K H+NI  IGH+D GK+T T  +   L           +K +A+       YA + D    ERERGITI+ A  ++ET K +   IDAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK D           D +  EV   L +  Y  + +P +  S     EGD   E+
Sbjct:    9 RTKPHVNIGTIGHIDHGKTTLTAAITKVLA----------DKGLAKAED----YADI-DAAPEERERGITINTAHVEYETEKRHYAHIDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHILLARQVGVDYIVVFLNKTDLVD---DDELVDLVEMEVRELLSEYDYPGDDIPVIRGSALKALEGDEEQEK 188          
The following BLAST results are available for this feature:
BLAST of FC876174 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_CYAPA1.081e-2135.08Elongation factor Tu, cyanelle OS=Cyanophora parad... [more]
EFTU_CHLPB1.081e-2133.01Elongation factor Tu OS=Chlorobium phaeobacteroide... [more]
EFTU_BRELN1.081e-2133.83Elongation factor Tu OS=Brevibacterium linens GN=t... [more]
EFTU_BORRA1.081e-2132.99Elongation factor Tu OS=Borrelia recurrentis (stra... [more]
EFTU_BORDL1.081e-2132.99Elongation factor Tu OS=Borrelia duttonii (strain ... [more]
EFTU_ANADE1.081e-2134.00Elongation factor Tu OS=Anaeromyxobacter dehalogen... [more]
CYSN_METC41.081e-2132.06Sulfate adenylyltransferase subunit 1 OS=Methyloba... [more]
EFTU_SYNJA1.412e-2130.26Elongation factor Tu OS=Synechococcus sp. (strain ... [more]
EFTU_LACH41.412e-2136.50Elongation factor Tu OS=Lactobacillus helveticus (... [more]
EFTU_LACBA1.412e-2136.10Elongation factor Tu OS=Lactobacillus brevis (stra... [more]

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Properties
Property NameValue
Genbank descriptionC32001B11EF DevOvary1 Citrus clementina cDNA clone C32001B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876174 ID=FC876174; Name=FC876174; organism=Citrus clementina; type=EST; length=707bp
GACTCTTTGCCCTCCCTCTTTTCTTGCTTGCTCTGCGGCTAGGTTTCAAT
TGTCTCTTCGAAGTTTCAGTTAATTTAACAGCCATGGGTAAGGAGAAGAC
TCACATCAACATTGTGGTGATTGGCCATGTCGACTCTGGAAAGTCGACCA
CCACCGGACACTTGATCTACAAGCTTGGTGGTATTGACAAGCGTGTGATC
GAGAGGTTCGAGAAGGAAGTTGCTGAGATGAACAAGAGGTCATTCAAGTA
CGCCTGGGTGCTCGACAAGCTCAAGGCTGAGCGTGAACGTGGTATTACCA
TTGATATTGCCTTGTGGAAGTTCGAGACCACCAAGTACTACTGCACCGTC
ATTGATGCTCCCGGACATCGTGACTTTATCAAGAACATGATTACCGGTAC
CTCACAGGCTGACTGTGCCGTCCTTATCATTGACTCCACCACCGGTGGTT
TTGAAGCTGGTATCTCCAAGGATGGTCAGACTCGTGAGCATGCTTTGCTT
GCTTTCACCCTTGGTGTGAAGCAGATGATTTGCTGCTGTAACAAGATGGA
CGCCACCACCCCCAAGTACTCAAAGGCTAGGTACGATGAAATTGTGAAGG
AGGTCTCTTCCTACCTGAAGAAGGTTGGATACAACCCCGAGAAAGTCCCA
TTCGTGCCCACCTCTGGTTTCGAGGGTGACAACATGATTGAGAGGTCTAC
CAACCTT
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