FC876179

Overview
NameFC876179
Unique NameFC876179
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10304 contig Ccv1_Contig10304:1..698. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA1_STAEQ (Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=hemL1 PE=3 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.509e-52
Identity = 103/163 (63.19%), Postives = 124/163 (76.07%), Query Frame = 2
Query:  209 TLKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            + + S +A   A++LMPGGVNSPVRAFKSV    I  D  +GS ++DIDGNEYIDYV SWGP I+GH + QV++ L E + KGTSFGA  L EN LAE+VI  VPSIE VR V+SGTEA +  LRLAR +TGR +I +FEGCYHGH+D  L+KAGSGVATLGL
Sbjct:    2 SFEKSIKAMEQAEKLMPGGVNSPVRAFKSVDTPAIFMDHGEGSKIYDIDGNEYIDYVLSWGPLILGHKNQQVISKLHEAVDKGTSFGASTLQENKLAELVIDRVPSIEKVRMVSSGTEATLDTLRLARGYTGRNKIIKFEGCYHGHSDSLLIKAGSGVATLGL 164          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_CHLSY (Glutamate-1-semialdehyde 2,1-aminomutase OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=hemL PE=3 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 3.361e-52
Identity = 99/159 (62.26%), Postives = 121/159 (76.10%), Query Frame = 2
Query:  221 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            S+  +  A+E++PGGVNSPVRAF+ VGG PI F+  +G+++WD+DGN YIDYV SWGP ++GHA   V+ A+    ++GTSFGAP  LE  LA +VI  VPSIE +RFVNSGTEA M  LRLARA TGR  I +F GCYHGHAD  LV+AGSGVATLGL
Sbjct:   11 SQADYAAAREVIPGGVNSPVRAFRGVGGIPIFFERGQGAYVWDVDGNRYIDYVLSWGPLLLGHAHPAVVEAITLQAQRGTSFGAPTELETELARLVIELVPSIEQIRFVNSGTEATMSALRLARAATGRRLIVKFNGCYHGHADMLLVQAGSGVATLGL 169          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_CHLAA (Glutamate-1-semialdehyde 2,1-aminomutase OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=hemL PE=3 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 3.361e-52
Identity = 99/159 (62.26%), Postives = 121/159 (76.10%), Query Frame = 2
Query:  221 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            S+  +  A+E++PGGVNSPVRAF+ VGG PI F+  +G+++WD+DGN YIDYV SWGP ++GHA   V+ A+    ++GTSFGAP  LE  LA +VI  VPSIE +RFVNSGTEA M  LRLARA TGR  I +F GCYHGHAD  LV+AGSGVATLGL
Sbjct:   11 SQADYAAAREVIPGGVNSPVRAFRGVGGIPIFFERGQGAYVWDVDGNRYIDYVLSWGPLLLGHAHPAVVEAITLQAQRGTSFGAPTELETELARLVIELVPSIEQIRFVNSGTEATMSALRLARAATGRRLIVKFNGCYHGHADMLLVQAGSGVATLGL 169          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA2_EXIS2 (Glutamate-1-semialdehyde 2,1-aminomutase 2 OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15) GN=hemL2 PE=3 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 4.390e-52
Identity = 100/159 (62.89%), Postives = 121/159 (76.10%), Query Frame = 2
Query:  221 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            S+ AF  A  LMPGGVNSPVRA+KSVG  PI  +  +GS ++DIDG EYIDYV SWGP I+GHAD  V AA+ E   +G S+G P  +E+ +AE+VIS VPS+E+VR VNSGTEA M  LRLAR +TG+ +I +FEGCYHGH D  L+KAGSGVATLGL
Sbjct:   10 SKAAFERALPLMPGGVNSPVRAYKSVGMTPIFAERAQGSRLYDIDGKEYIDYVLSWGPMILGHADPIVTAAIQEQATRGWSYGTPTEIESAMAEVVISRVPSVEVVRMVNSGTEATMAALRLARGYTGKTKILKFEGCYHGHGDSLLIKAGSGVATLGL 168          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_SULAA (Glutamate-1-semialdehyde 2,1-aminomutase OS=Sulfurihydrogenibium azorense (strain Az-Fu1 / DSM 15241 / OCM 825) GN=hemL PE=3 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.277e-51
Identity = 98/159 (61.64%), Postives = 119/159 (74.84%), Query Frame = 2
Query:  221 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            S+E F  A+  + GGVNSPVRAFK+VG  PI     KGS +WD+DGNEYIDYV SWGP I+GHA DQV+ A+ +    GTSFGAP  LE  +A+ V+ AV S+EMVRFVNSGTEA M  +RLAR +T R++I +F+GCYHGH D  LV AGSGVATLG+
Sbjct:    6 SKELFKEAQNYLVGGVNSPVRAFKAVGTDPIFIQRGKGSRIWDVDGNEYIDYVLSWGPLILGHAHDQVVNAIKQVANYGTSFGAPTELEIEMAKAVVDAVKSVEMVRFVNSGTEATMSAIRLARGYTKRKKIVKFDGCYHGHGDSLLVSAGSGVATLGI 164          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA1_LISIN (Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Listeria innocua GN=hemL1 PE=3 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.277e-51
Identity = 98/159 (61.64%), Postives = 121/159 (76.10%), Query Frame = 2
Query:  221 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            SE+AF  AK+++PGGVNSPVRAF SV   P+  D  KG+++ D+DGNEYIDYV SWGP I+GHAD  V+ A+  +  KGTSFG P  +E  LA++VI  VPSIE+VR V+SGTEA M  +RLAR +T RE+I +FEG YHGH D  L+KAGSGVATLGL
Sbjct:    7 SEKAFKEAKKVLPGGVNSPVRAFNSVDASPVFMDHGKGAYITDVDGNEYIDYVLSWGPLILGHADPSVVNAITNSAMKGTSFGTPTEIETELAKLVIERVPSIEIVRMVSSGTEATMSAIRLARGYTKREKILKFEGSYHGHGDSLLIKAGSGVATLGL 165          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_SYNWW (Glutamate-1-semialdehyde 2,1-aminomutase OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=hemL PE=3 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.668e-51
Identity = 96/161 (59.63%), Postives = 121/161 (75.16%), Query Frame = 2
Query:  215 KNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            + S E F  A+E +PGGVNSPVRAFK+VG  P+      GS ++D+DGNEYIDYV SWGP I+GH+  QV+ A+ E  +KG+SFGAPC  E  LA+++  A+PS+E VR VNSGTEA M  +RLARAFTGR  I +FEGCYHGHAD FL++AGSG+ T G+
Sbjct:    4 ERSIELFARAREYIPGGVNSPVRAFKAVGNNPLFIKEGHGSKIYDVDGNEYIDYVCSWGPLILGHSHPQVVQAICEAAEKGSSFGAPCEQEIELAQLICEAIPSVEKVRMVNSGTEATMSAVRLARAFTGRNHIVKFEGCYHGHADHFLIQAGSGLLTAGV 164          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_GEOMG (Glutamate-1-semialdehyde 2,1-aminomutase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=hemL PE=3 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.668e-51
Identity = 96/160 (60.00%), Postives = 121/160 (75.62%), Query Frame = 2
Query:  218 NSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            +S+E F  A+E++PGGVNSPVRAFKSVG +P+      GS + D D N YIDYVGSWGP I+GH   +++A++    + G+SFGAP  LE  LAEMV++AVPSIEMVR V+SGTEA M  +RLAR +TGR++I +F GCYHGHAD  LVKAGSG AT G+
Sbjct:    5 HSKELFAKAQEIIPGGVNSPVRAFKSVGAEPVFIKKASGSTIIDADDNAYIDYVGSWGPMILGHCHPRIVASVQRATENGSSFGAPTELEITLAEMVVAAVPSIEMVRMVSSGTEATMSAIRLARGYTGRDKIIKFSGCYHGHADSLLVKAGSGAATFGV 164          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA1_STACT (Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Staphylococcus carnosus (strain TM300) GN=hemL1 PE=3 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.179e-51
Identity = 102/161 (63.35%), Postives = 122/161 (75.78%), Query Frame = 2
Query:  215 KNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            + S EA+  A++LMPGGVNSPVRAFKSV    I  D  KGS ++DIDGNEYIDYV SWGP I+GH + QV+  L + + KGTSFGA  L E  LAE+VI  VPSIE VR V+SGTEA    +RLAR +TGR++I +FEGCYHGH+D  L+KAGSGVATLGL
Sbjct:    4 EKSIEAYKKAEQLMPGGVNSPVRAFKSVDMPAIFMDHGKGSKIYDIDGNEYIDYVLSWGPLILGHENPQVIENLHKAVDKGTSFGASTLEEIKLAELVIDRVPSIEKVRMVSSGTEATQDTIRLARGYTGRDKIVKFEGCYHGHSDSLLIKAGSGVATLGL 164          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA1_LISMF (Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Listeria monocytogenes serotype 4b (strain F2365) GN=hemL1 PE=3 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.179e-51
Identity = 98/159 (61.64%), Postives = 121/159 (76.10%), Query Frame = 2
Query:  221 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            SE+AF  AK+++PGGVNSPVRAF SV   P+  D  KG+++ D+DGNEYIDYV SWGP I+GHAD  V+ A+ +   KGTSFG P  +E  LA++VI  VPSIE+VR V+SGTEA M  +RLAR +T RE+I +FEG YHGH D  L+KAGSGVATLGL
Sbjct:    7 SEKAFKEAKKVLPGGVNSPVRAFNSVDASPVFMDHGKGAYITDVDGNEYIDYVLSWGPLILGHADPAVVNAITKAALKGTSFGTPTEIETELAKLVIERVPSIEIVRMVSSGTEATMSAIRLARGYTKREKILKFEGSYHGHGDSLLIKAGSGVATLGL 165          
The following BLAST results are available for this feature:
BLAST of FC876179 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GSA1_STAEQ1.509e-5263.19Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Stap... [more]
GSA_CHLSY3.361e-5262.26Glutamate-1-semialdehyde 2,1-aminomutase OS=Chloro... [more]
GSA_CHLAA3.361e-5262.26Glutamate-1-semialdehyde 2,1-aminomutase OS=Chloro... [more]
GSA2_EXIS24.390e-5262.89Glutamate-1-semialdehyde 2,1-aminomutase 2 OS=Exig... [more]
GSA_SULAA1.277e-5161.64Glutamate-1-semialdehyde 2,1-aminomutase OS=Sulfur... [more]
GSA1_LISIN1.277e-5161.64Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=List... [more]
GSA_SYNWW1.668e-5159.63Glutamate-1-semialdehyde 2,1-aminomutase OS=Syntro... [more]
GSA_GEOMG1.668e-5160.00Glutamate-1-semialdehyde 2,1-aminomutase OS=Geobac... [more]
GSA1_STACT2.179e-5163.35Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Stap... [more]
GSA1_LISMF2.179e-5161.64Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=List... [more]

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Properties
Property NameValue
Genbank descriptionC32001C05EF DevOvary1 Citrus clementina cDNA clone C32001C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876179 ID=FC876179; Name=FC876179; organism=Citrus clementina; type=EST; length=698bp
GACAGTTTCTTATCTTGATTGACCGAGGAAAAGAGAAAGAGACATCAGAG
AGAGTGACACAAAAATGGCAGCTACAATTACAGGGGTAGGAGTTGGGTTA
GGGCTTTCATGTTCATCAAAGCTCACCAAGAGATTTTCTTCTTCTACTGG
ATCCTCTCGCTGTAGTGTTAAAATGTCGGTCTCTGTTGAGGAGCAGAAGA
AAAATTTCACTTTAAAAAACTCTGAAGAAGCTTTCAATGTCGCCAAGGAA
TTGATGCCTGGAGGTGTAAATTCACCTGTACGTGCCTTCAAATCTGTTGG
TGGTCAACCTATTGTGTTTGATTCCGTCAAGGGCTCACACATGTGGGATA
TCGATGGCAACGAGTACATTGACTATGTAGGTTCTTGGGGGCCGGCAATT
ATTGGTCACGCAGATGATCAGGTACTAGCAGCCTTGGGTGAAACAATGAA
GAAAGGAACCAGCTTTGGTGCTCCTTGTCTTCTAGAGAATGTTCTTGCAG
AAATGGTAATCTCAGCTGTTCCAAGCATAGAAATGGTTCGTTTTGTTAAC
TCAGGCACAGAAGCATGCATGGGTGTGCTTCGCCTTGCCCGTGCCTTCAC
TGGGAGAGAGAGGATCATNCAATTTGAGGGTTGTTATCATGGCCATGCTG
ATCCATTTCTTGTCAAGGCTGGTAGTGGAGTTGCCACCCTAGGGCTTC
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