FC876179

Overview
NameFC876179
Unique NameFC876179
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10304 contig Ccv1_Contig10304:1..698. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_BORPD (Glutamate-1-semialdehyde 2,1-aminomutase OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=hemL PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 5.198e-45
Identity = 88/161 (54.66%), Postives = 112/161 (69.57%), Query Frame = 2
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            + ++ + F+ A   +PGGVNSPVRAF+SVGG P      +G ++WD +   YIDYVGSWGPAI+GHA   V+ A+ E    G SFGAP   E  LAE++I  +PS+E VR V+SGTEA M  +RLAR  TGR +I +FEGCYHGH+D  LVKAGSG+ T G
Sbjct:    1 MSSNAQLFDRACRSIPGGVNSPVRAFRSVGGTPRFIKRAQGPYVWDEEDTRYIDYVGSWGPAILGHAHPDVVQAVREAALDGLSFGAPTRAEVELAEVLIERLPSLEQVRLVSSGTEATMTAIRLARGATGRAKIIKFEGCYHGHSDSLLVKAGSGLLTFG 161          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_VEREI (Glutamate-1-semialdehyde 2,1-aminomutase OS=Verminephrobacter eiseniae (strain EF01-2) GN=hemL PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 6.789e-45
Identity = 85/154 (55.19%), Postives = 109/154 (70.78%), Query Frame = 2
Query:  233 FNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            F  AK L+PGGVNSPVRAFK+VGG P      +G++ WD +   +IDY+GSWGP I+GH    VL A+ +   +G SFGAP   E  LAE ++  +PS++M+R V+SGTEA M  +RLAR  TGR ++ +FEGCYHGHAD  LVKAGSG+AT G
Sbjct:   12 FERAKALIPGGVNSPVRAFKAVGGTPRFVKRARGAYFWDANDQRFIDYIGSWGPMILGHGHPAVLEAVQQAALEGLSFGAPTERELELAEAILRLLPSMQMIRLVSSGTEAGMSAIRLARGATGRSKLIKFEGCYHGHADALLVKAGSGLATFG 165          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_MYCGI (Glutamate-1-semialdehyde 2,1-aminomutase OS=Mycobacterium gilvum (strain PYR-GCK) GN=hemL PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 6.789e-45
Identity = 90/163 (55.21%), Postives = 108/163 (66.26%), Query Frame = 2
Query:  209 TLKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            T + S + F  A  ++PGGVNSPVRAF SVGG P    S KG  + D+DGN+Y+D V SWGP I+GHA   V+ A+      G SFGAP   E+ LA  +I  V  +E VR VNSGTEA M  +RLAR FTGR +I +F GCYHGH+D  L  AGSGVATLGL
Sbjct:    3 TTEESAKLFADASSVIPGGVNSPVRAFNSVGGTPRFITSAKGCRLTDVDGNQYVDLVCSWGPMILGHAHPAVVEAVQRVAAHGLSFGAPTPSESELAREIIDRVAPVERVRLVNSGTEATMSAIRLARGFTGRAKIVKFSGCYHGHSDALLADAGSGVATLGL 165          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_LARHH (Glutamate-1-semialdehyde 2,1-aminomutase OS=Laribacter hongkongensis (strain HLHK9) GN=hemL PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 6.789e-45
Identity = 86/161 (53.42%), Postives = 109/161 (67.70%), Query Frame = 2
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            +  +++ F  AK ++PGGVNSPVRAF SVGG P      +G++MWD D    IDY+GSWGP I+GHA   V+ A+ +    G SFG P   E  +AE +   +PSIE VR V+SGTEA M  +RLAR FTGR+ I +FEGCYHGH+D  LVKAGSG+ T G
Sbjct:    1 MDRNQQLFERAKHVIPGGVNSPVRAFGSVGGSPRFIKRAQGAYMWDADDRRLIDYIGSWGPMILGHAHPAVVEAVQQAAVHGLSFGTPTEAEIGIAEEICKLMPSIERVRLVSSGTEATMSAIRLARGFTGRDAIIKFEGCYHGHSDSLLVKAGSGLLTFG 161          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_HELPY (Glutamate-1-semialdehyde 2,1-aminomutase OS=Helicobacter pylori GN=hemL PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 6.789e-45
Identity = 87/161 (54.04%), Postives = 115/161 (71.43%), Query Frame = 2
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            L +S   FN AK+++ GGVNSPVRAFKSV G P      KG++++D+D N YID+V SWGP I GHAD+++   +   +KKGTSFGAP  LE  LA+ +IS    ++ VR V+SGTEA M  +RLARA++ ++ + +FEGCYHGH+D  LVKAGSG AT G
Sbjct:    3 LLHSINDFNEAKQVIAGGVNSPVRAFKSVKGTPPFILKGKGAYLYDVDNNHYIDFVQSWGPLIFGHADEEIEENIINALKKGTSFGAPTELETTLAKEIISCYEGLDKVRLVSSGTEATMSAIRLARAYSQKDDLIKFEGCYHGHSDSLLVKAGSGCATFG 163          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_VIBSL (Glutamate-1-semialdehyde 2,1-aminomutase OS=Vibrio splendidus (strain LGP32) GN=hemL PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 8.866e-45
Identity = 88/161 (54.66%), Postives = 110/161 (68.32%), Query Frame = 2
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            +  S E +  A++ +PGGVNSPVRAF  VGG PI  +   G  ++D DG  YIDYVGSWGP I+GH    +  A+    ++G SFGAP   E  +AE+V   VPS+E +R V+SGTEA M  +RLAR FTGR++I +FEGCYHGHAD  LVKAGSG  TLG
Sbjct:    1 MTKSAELYEKAQQTIPGGVNSPVRAFNGVGGSPIFVERADGPLIFDADGKAYIDYVGSWGPMILGHNHVVIRDAVIAAAQRGLSFGAPTETEIKMAELVSEMVPSMEQLRMVSSGTEATMSAIRLARGFTGRDKILKFEGCYHGHADSLLVKAGSGALTLG 161          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_PSEA6 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=hemL PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 8.866e-45
Identity = 84/162 (51.85%), Postives = 115/162 (70.99%), Query Frame = 2
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            ++ SE+ F  A++ +PGGVNSPVRAF++VGG P   +   G +++D DG +YIDYV SWGP ++GH +  +  A+ +  + G SFGAP   E  +A++V   VPS+EM+R VNSGTEA M  +RLAR +T R++I +FEGCYHGHAD  LVKAGSG  T G+
Sbjct:    1 MQKSEQLFARAQKHIPGGVNSPVRAFRAVGGTPPFIEKADGPYLYDADGKQYIDYVQSWGPMVLGHNNPIIRQAVIDAAQNGLSFGAPTEAEVTIADLVSELVPSMEMLRMVNSGTEATMSAIRLARGYTKRDKILKFEGCYHGHADALLVKAGSGALTFGV 162          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_DESAA (Glutamate-1-semialdehyde 2,1-aminomutase OS=Desulfatibacillum alkenivorans (strain AK-01) GN=hemL PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 8.866e-45
Identity = 89/162 (54.94%), Postives = 113/162 (69.75%), Query Frame = 2
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            ++ S+E F  A + +PGGVNSPVRA  SVG  P      +GS ++D DG +YIDY+GSWGP I+GH    V+ A+   +  G +FGAP  LE  LAE V++ +PS+EMVR VNSGTEA M  +RLAR  TGR+ I +F+GCYHGH D  LV AGSGVATLG+
Sbjct:    1 MEKSKELFARACKTIPGGVNSPVRACGSVGTDPCFIARGQGSAIFDADGKQYIDYIGSWGPLILGHRHPAVIKAIEAALANGCTFGAPTELEIDLAEAVVNIMPSVEMVRMVNSGTEATMSAIRLARGATGRDGIVKFDGCYHGHGDSLLVAAGSGVATLGI 162          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_ACIC1 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) GN=hemL PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 8.866e-45
Identity = 88/159 (55.35%), Postives = 110/159 (69.18%), Query Frame = 2
Query:  221 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            S   F  A+  +PGGVNSPVRAF++VGG P    S  G ++ D+DGN Y+D V SWGP I+GHA   V+AA+ +  ++GTSFGAP   E  +AE +   VP++EM+R VNSGTEA M  LRLARA+T R  + +F GCYHGH D  L  AGSGVATLGL
Sbjct:   10 SAACFERARARIPGGVNSPVRAFRAVGGTPRFIQSGAGPYLVDVDGNRYVDLVCSWGPLILGHAHPAVVAAVKQAAERGTSFGAPTEAEIEMAEEIARRVPAVEMIRLVNSGTEATMSALRLARAYTNRPLVVKFAGCYHGHVDALLSAAGSGVATLGL 168          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_ARTCA (Glutamate-1-semialdehyde 2,1-aminomutase OS=Arthrobacter chlorophenolicus (strain A6 / ATCC 700700 / DSM 12829 / JCM 12360) GN=hemL PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.158e-44
Identity = 91/159 (57.23%), Postives = 112/159 (70.44%), Query Frame = 2
Query:  221 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            +EE F+ A++LMPGGVNSPVRAF SVGG P    S KG ++ D DGNEY+D V SWGPA++GHA   VL A+   + +G SFGA    E  LAE+V+  VP++E +R V++GTEA M  +RLAR FTGR  I +F GCYHGH D  L  AGSGVATL L
Sbjct:    8 NEELFDRARQLMPGGVNSPVRAFGSVGGTPRFMVSAKGPYLMDADGNEYVDLVCSWGPALLGHAHPAVLDAVHAAVDRGLSFGASTPDEANLAEIVMERVPAVERLRMVSTGTEATMTAVRLARGFTGRNLIIKFAGCYHGHLDGLLAAAGSGVATLAL 166          
The following BLAST results are available for this feature:
BLAST of FC876179 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GSA_BORPD5.198e-4554.66Glutamate-1-semialdehyde 2,1-aminomutase OS=Bordet... [more]
GSA_VEREI6.789e-4555.19Glutamate-1-semialdehyde 2,1-aminomutase OS=Vermin... [more]
GSA_MYCGI6.789e-4555.21Glutamate-1-semialdehyde 2,1-aminomutase OS=Mycoba... [more]
GSA_LARHH6.789e-4553.42Glutamate-1-semialdehyde 2,1-aminomutase OS=Lariba... [more]
GSA_HELPY6.789e-4554.04Glutamate-1-semialdehyde 2,1-aminomutase OS=Helico... [more]
GSA_VIBSL8.866e-4554.66Glutamate-1-semialdehyde 2,1-aminomutase OS=Vibrio... [more]
GSA_PSEA68.866e-4551.85Glutamate-1-semialdehyde 2,1-aminomutase OS=Pseudo... [more]
GSA_DESAA8.866e-4554.94Glutamate-1-semialdehyde 2,1-aminomutase OS=Desulf... [more]
GSA_ACIC18.866e-4555.35Glutamate-1-semialdehyde 2,1-aminomutase OS=Acidot... [more]
GSA_ARTCA1.158e-4457.23Glutamate-1-semialdehyde 2,1-aminomutase OS=Arthro... [more]

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Properties
Property NameValue
Genbank descriptionC32001C05EF DevOvary1 Citrus clementina cDNA clone C32001C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876179 ID=FC876179; Name=FC876179; organism=Citrus clementina; type=EST; length=698bp
GACAGTTTCTTATCTTGATTGACCGAGGAAAAGAGAAAGAGACATCAGAG
AGAGTGACACAAAAATGGCAGCTACAATTACAGGGGTAGGAGTTGGGTTA
GGGCTTTCATGTTCATCAAAGCTCACCAAGAGATTTTCTTCTTCTACTGG
ATCCTCTCGCTGTAGTGTTAAAATGTCGGTCTCTGTTGAGGAGCAGAAGA
AAAATTTCACTTTAAAAAACTCTGAAGAAGCTTTCAATGTCGCCAAGGAA
TTGATGCCTGGAGGTGTAAATTCACCTGTACGTGCCTTCAAATCTGTTGG
TGGTCAACCTATTGTGTTTGATTCCGTCAAGGGCTCACACATGTGGGATA
TCGATGGCAACGAGTACATTGACTATGTAGGTTCTTGGGGGCCGGCAATT
ATTGGTCACGCAGATGATCAGGTACTAGCAGCCTTGGGTGAAACAATGAA
GAAAGGAACCAGCTTTGGTGCTCCTTGTCTTCTAGAGAATGTTCTTGCAG
AAATGGTAATCTCAGCTGTTCCAAGCATAGAAATGGTTCGTTTTGTTAAC
TCAGGCACAGAAGCATGCATGGGTGTGCTTCGCCTTGCCCGTGCCTTCAC
TGGGAGAGAGAGGATCATNCAATTTGAGGGTTGTTATCATGGCCATGCTG
ATCCATTTCTTGTCAAGGCTGGTAGTGGAGTTGCCACCCTAGGGCTTC
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