FC876179

Overview
NameFC876179
Unique NameFC876179
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10304 contig Ccv1_Contig10304:1..698. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_CAMJ8 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Campylobacter jejuni subsp. jejuni serotype O:6 (strain 81116 / NCTC 11828) GN=hemL PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.580e-44
Identity = 84/156 (53.85%), Postives = 112/156 (71.79%), Query Frame = 2
Query:  221 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVAT 688
            +++AF  A + + GGVNSPVRAF +V  +P      KG++++DIDGN YIDYV SWGP + GH D  +  A  + + KG+SFGAP LLE  LA++V+S  P +E +RFV+SGTEA M  +RLAR FT +++I +FEGCYHGH+D  LV AGSG AT
Sbjct:    3 NKKAFKEACKFIAGGVNSPVRAFANVQSEPKFISHGKGAYIFDIDGNSYIDYVQSWGPLLFGHCDKDIQKACQKALHKGSSFGAPTLLETELAKLVLSDFPHLEKIRFVSSGTEATMSAIRLARGFTKKDKILKFEGCYHGHSDSLLVSAGSGAAT 158          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_NAUPA (Glutamate-1-semialdehyde 2,1-aminomutase OS=Nautilia profundicola (strain ATCC BAA-1463 / DSM 18972 / AmH) GN=hemL PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.369e-44
Identity = 81/154 (52.60%), Postives = 111/154 (72.08%), Query Frame = 2
Query:  233 FNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            F  AK+ + GGVNSPVRAFKSVGG+P   +  +G++++DI+GN+Y+DY+ SWGP I GH D  +  A+   + KG SFGAP  +E  LA+ V+   P ++++RFVNSGTEA M  +R+AR  +G++ I +FEGCYHGH+D  LV AGSG AT G
Sbjct:    4 FEEAKKYIVGGVNSPVRAFKSVGGEPPFIEKGEGAYIYDINGNKYLDYIQSWGPLIFGHCDKDIEKAICNAVSKGVSFGAPTTVEVELAKEVLDLFPHLDLIRFVNSGTEATMSAIRVARGVSGKDDIIKFEGCYHGHSDSLLVSAGSGAATFG 157          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_CHRSD (Glutamate-1-semialdehyde 2,1-aminomutase OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=hemL PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.369e-44
Identity = 84/161 (52.17%), Postives = 110/161 (68.32%), Query Frame = 2
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            +  S + F  A   +PGGVNSPVRAFK +   P+  +  +G++++D++G  YIDYVGSWGP I GHAD  VL A+   +  G SFG P  +E  +AE++   +PSI+MVR VNSGTEA M  +RLAR  TGR++I +FEG YHGH+D  LVKAGSG  T G
Sbjct:    1 MTTSAQLFEQACRHIPGGVNSPVRAFKGMERAPVFVERAQGAYLYDVEGQRYIDYVGSWGPLITGHADPDVLGAVRSRLDDGLSFGTPTAIETRMAELICEIMPSIDMVRMVNSGTEATMSAIRLARGHTGRDKIVKFEGNYHGHSDSLLVKAGSGALTHG 161          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_AKKM8 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Akkermansia muciniphila (strain ATCC BAA-835) GN=hemL PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.369e-44
Identity = 83/161 (51.55%), Postives = 109/161 (67.70%), Query Frame = 2
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            +  S + F+ A+ ++PGGVNSPVRAF++V G P    S KG+++ D DG + IDY+G+WGPAI+GHA   VL A+   + +G  +G P   E  +AEM+   VPS+E VR VNSGTEA M  +RLAR +TGR +I +F GCYHGH D  LV AGSG  T G
Sbjct:    1 MNQSAQLFSRARSVIPGGVNSPVRAFRNVDGDPFFVQSAKGAYITDADGRQLIDYIGTWGPAILGHAPQPVLDAVHAAVDRGLGYGIPAPAEVDMAEMITDMVPSVEKVRMVNSGTEATMSAIRLARGYTGRRKIIKFIGCYHGHVDSLLVAAGSGALTFG 161          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_SULNB (Glutamate-1-semialdehyde 2,1-aminomutase OS=Sulfurovum sp. (strain NBC37-1) GN=hemL PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.400e-44
Identity = 85/155 (54.84%), Postives = 112/155 (72.26%), Query Frame = 2
Query:  230 AFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            AF  A +++PGGV+SPVRAF  V G P   +  +G++++DIDGN YIDYV SWGP I GH D  + A++ +++KKG SFGAP  +E  LAE ++    SI+ VRFV+SGTEA M  +RLAR  TGR+ I +F GCYHGH+D  LV+AGSG+AT G
Sbjct:    9 AFEEAYKVIPGGVDSPVRAFSGVEGTPPFIERGEGAYLFDIDGNRYIDYVQSWGPLIFGHTDADIEASVIDSVKKGLSFGAPTTVETELAEEIVLMFESIDKVRFVSSGTEAVMSAIRLARGATGRDNILKFTGCYHGHSDSLLVQAGSGLATFG 163          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_THEAB (Glutamate-1-semialdehyde 2,1-aminomutase OS=Thermosipho africanus (strain TCF52B) GN=hemL PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 7.506e-44
Identity = 86/154 (55.84%), Postives = 110/154 (71.43%), Query Frame = 2
Query:  233 FNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            F +AK+ MPGGVNSPVRAFKSV  +PI   S K S + DI+  EYIDY+ SWG  I+GHA ++V+  + +  + GTS+G    LE  +A +++  +PS+EMVR VNSGTEA M  +RLARA+T RE I +FEGCYHGH+D  LVKAGSG  T G
Sbjct:    2 FEIAKKYMPGGVNSPVRAFKSVEMEPIFVKSAKKSKLIDINNKEYIDYIQSWGALILGHAHEEVVEEIKKQAELGTSYGLCHELEVEMARLIVKHIPSVEMVRMVNSGTEAVMSAIRLARAYTNRELIVKFEGCYHGHSDGLLVKAGSGALTFG 155          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_PSYCK (Glutamate-1-semialdehyde 2,1-aminomutase OS=Psychrobacter cryohalolentis (strain K5) GN=hemL PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 7.506e-44
Identity = 82/158 (51.90%), Postives = 109/158 (68.99%), Query Frame = 2
Query:  221 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            +E+ F  A++ +PGGVNSPVRAF  VGG PI      GS ++D + N YIDYVGSWGP I+GHA  +V+ A+ +    G SFG P   E  +A+ +   VPS+EM+R  +SGTEA M  +RLAR +T R++I +FEGCYHGH+D  LVKAGSG+  +G
Sbjct:    5 NEQLFAQARKHIPGGVNSPVRAFAGVGGTPIFMHRANGSKIYDTEDNAYIDYVGSWGPMILGHAHPKVIDAVKKAADDGLSFGTPTPFETTVADKICEIVPSVEMIRMTSSGTEATMSAIRLARGYTQRDKIVKFEGCYHGHSDSLLVKAGSGMLDIG 162          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_LEPIN (Glutamate-1-semialdehyde 2,1-aminomutase OS=Leptospira interrogans GN=hemL PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 7.506e-44
Identity = 91/157 (57.96%), Postives = 111/157 (70.70%), Query Frame = 2
Query:  215 KNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVA 685
            K SEE F  AK++ PGGV+SPVR+F+SVGG P+ F S KG+ + DI G EYIDY  S+GP I+GH D +V   + ET +   SFGA       LAE++ S VP  E VRFVNSGTEA M  LR+ARA TGRE+I +F+GCYHGH D  LVKAGSG+A
Sbjct:   18 KTSEELFERAKKVSPGGVHSPVRSFRSVGGTPVFFASAKGATLTDISGKEYIDYCLSFGPLILGHRDPEVEEVVRETTEIAWSFGAAEPYSLELAELISSRVPWAEKVRFVNSGTEAVMSALRVARAATGREKILKFDGCYHGHLDSLLVKAGSGLA 174          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_CAMJE (Glutamate-1-semialdehyde 2,1-aminomutase OS=Campylobacter jejuni GN=hemL PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 7.506e-44
Identity = 83/156 (53.21%), Postives = 111/156 (71.15%), Query Frame = 2
Query:  221 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVAT 688
            +++AF    + + GGVNSPVRAF +V  +P      KG++++DIDGN YIDYV SWGP + GH D  +  A  + + KG+SFGAP LLE  LA++V+S  P +E +RFV+SGTEA M  +RLAR FT +++I +FEGCYHGH+D  LV AGSG AT
Sbjct:    3 NKKAFKETCKFIAGGVNSPVRAFANVQSEPKFISHGKGAYIFDIDGNSYIDYVQSWGPLLFGHCDKDIQKACQKALHKGSSFGAPTLLETELAKLVLSDFPHLEKIRFVSSGTEATMSAIRLARGFTKKDKILKFEGCYHGHSDSLLVSAGSGAAT 158          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_LEPIC (Glutamate-1-semialdehyde 2,1-aminomutase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=hemL PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 9.803e-44
Identity = 90/157 (57.32%), Postives = 111/157 (70.70%), Query Frame = 2
Query:  215 KNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVA 685
            K SEE F  AK++ PGGV+SPVR+F+SVGG P+ F S KG+ + DI G EYIDY  S+GP I+GH D ++   + ET +   SFGA       LAE++ S VP  E VRFVNSGTEA M  LR+ARA TGRE+I +F+GCYHGH D  LVKAGSG+A
Sbjct:   18 KTSEELFERAKKVSPGGVHSPVRSFRSVGGTPVFFASAKGATLTDISGKEYIDYCLSFGPLILGHRDPEIEEVVRETTEIAWSFGAAEPYSLELAELISSRVPWAEKVRFVNSGTEAVMSALRVARAATGREKILKFDGCYHGHLDSLLVKAGSGLA 174          
The following BLAST results are available for this feature:
BLAST of FC876179 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GSA_CAMJ82.580e-4453.85Glutamate-1-semialdehyde 2,1-aminomutase OS=Campyl... [more]
GSA_NAUPA3.369e-4452.60Glutamate-1-semialdehyde 2,1-aminomutase OS=Nautil... [more]
GSA_CHRSD3.369e-4452.17Glutamate-1-semialdehyde 2,1-aminomutase OS=Chromo... [more]
GSA_AKKM83.369e-4451.55Glutamate-1-semialdehyde 2,1-aminomutase OS=Akkerm... [more]
GSA_SULNB4.400e-4454.84Glutamate-1-semialdehyde 2,1-aminomutase OS=Sulfur... [more]
GSA_THEAB7.506e-4455.84Glutamate-1-semialdehyde 2,1-aminomutase OS=Thermo... [more]
GSA_PSYCK7.506e-4451.90Glutamate-1-semialdehyde 2,1-aminomutase OS=Psychr... [more]
GSA_LEPIN7.506e-4457.96Glutamate-1-semialdehyde 2,1-aminomutase OS=Leptos... [more]
GSA_CAMJE7.506e-4453.21Glutamate-1-semialdehyde 2,1-aminomutase OS=Campyl... [more]
GSA_LEPIC9.803e-4457.32Glutamate-1-semialdehyde 2,1-aminomutase OS=Leptos... [more]

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Properties
Property NameValue
Genbank descriptionC32001C05EF DevOvary1 Citrus clementina cDNA clone C32001C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876179 ID=FC876179; Name=FC876179; organism=Citrus clementina; type=EST; length=698bp
GACAGTTTCTTATCTTGATTGACCGAGGAAAAGAGAAAGAGACATCAGAG
AGAGTGACACAAAAATGGCAGCTACAATTACAGGGGTAGGAGTTGGGTTA
GGGCTTTCATGTTCATCAAAGCTCACCAAGAGATTTTCTTCTTCTACTGG
ATCCTCTCGCTGTAGTGTTAAAATGTCGGTCTCTGTTGAGGAGCAGAAGA
AAAATTTCACTTTAAAAAACTCTGAAGAAGCTTTCAATGTCGCCAAGGAA
TTGATGCCTGGAGGTGTAAATTCACCTGTACGTGCCTTCAAATCTGTTGG
TGGTCAACCTATTGTGTTTGATTCCGTCAAGGGCTCACACATGTGGGATA
TCGATGGCAACGAGTACATTGACTATGTAGGTTCTTGGGGGCCGGCAATT
ATTGGTCACGCAGATGATCAGGTACTAGCAGCCTTGGGTGAAACAATGAA
GAAAGGAACCAGCTTTGGTGCTCCTTGTCTTCTAGAGAATGTTCTTGCAG
AAATGGTAATCTCAGCTGTTCCAAGCATAGAAATGGTTCGTTTTGTTAAC
TCAGGCACAGAAGCATGCATGGGTGTGCTTCGCCTTGCCCGTGCCTTCAC
TGGGAGAGAGAGGATCATNCAATTTGAGGGTTGTTATCATGGCCATGCTG
ATCCATTTCTTGTCAAGGCTGGTAGTGGAGTTGCCACCCTAGGGCTTC
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