FC876179

Overview
NameFC876179
Unique NameFC876179
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10304 contig Ccv1_Contig10304:1..698. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_CAMC1 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Campylobacter concisus (strain 13826) GN=hemL PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 9.803e-44
Identity = 75/158 (47.47%), Postives = 114/158 (72.15%), Query Frame = 2
Query:  221 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            ++EAF+ AK+ +PGGVNSPVRAF SVGG+P++ D  +G++++D++G +Y+D++ SWGP I GH D  +  A+   +K+G S+GAP   E  LA+++      I+ +RFV+SGTEA M  +R+AR +  ++ + +FEGCYHGH+D  L+KAGSG  T G
Sbjct:    3 NKEAFSEAKKYIPGGVNSPVRAFGSVGGEPVMIDHARGAYLYDVEGKKYLDFIQSWGPLIFGHCDKDIEEAIISAVKQGVSYGAPSPKETALAKLICDEFKQIDKIRFVSSGTEATMSAIRVARGYAKKDGLIKFEGCYHGHSDALLIKAGSGATTYG 160          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_MYCS2 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Mycobacterium smegmatis GN=hemL PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.672e-43
Identity = 90/169 (53.25%), Postives = 110/169 (65.09%), Query Frame = 2
Query:  191 EQKKNFTLKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            E+    + + S + F  A  ++PGGVNSPVRAF SVGG P    S  G  + D DGN YID V SWGP ++GHA   V+ A+ +  + G SFGAP   E  LA  +I  V  +EM+RFVNSGTEA M  +RLAR FTGR +I +F GCYHGH+D  L  AGSGVATLGL
Sbjct:   12 EEHSPASTQRSAQLFADACAVIPGGVNSPVRAFNSVGGTPRFITSAGGYWLTDADGNRYIDLVCSWGPMLLGHAHPAVVEAVRKVAEHGLSFGAPTPSETELAAEIIDRVAPVEMMRFVNSGTEATMSAIRLARGFTGRAKIVKFSGCYHGHSDALLADAGSGVATLGL 180          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_KOCRD (Glutamate-1-semialdehyde 2,1-aminomutase OS=Kocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201) GN=hemL PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.672e-43
Identity = 85/159 (53.46%), Postives = 111/159 (69.81%), Query Frame = 2
Query:  221 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            S+E F+ A+ +MPGGVNSPVRAF SVGG P    + KG ++ D+DG EY+D V SWGPA+IGHA   V  A+ E +++G  FGA    E  LAE+V+  V  +E +R V++GTEA M  LRLAR +TGR+ + +F GCYHGH D  L +AGSG+ATL L
Sbjct:    4 SQELFDRARRVMPGGVNSPVRAFNSVGGTPPFIAAAKGPYLTDVDGREYVDLVCSWGPALIGHAHPVVTEAVHEAVERGLGFGATTRGETELAELVVDRVAPLEEIRMVSTGTEATMTALRLARGYTGRDLVVKFAGCYHGHVDSLLSEAGSGLATLAL 162          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_HELHP (Glutamate-1-semialdehyde 2,1-aminomutase OS=Helicobacter hepaticus GN=hemL PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.672e-43
Identity = 86/154 (55.84%), Postives = 109/154 (70.78%), Query Frame = 2
Query:  233 FNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            FN AK+++PGGVNSPVRAF SVGG P      KG++++D D NEYID+V SWGP I GHA++ + +AL   +K G SFGAP   E  L + +I+   S E +R VNSGTEA M  LRLARA++ ++ I +FEGCYHGH+D  LV AGSG AT G
Sbjct:   10 FNEAKQVIPGGVNSPVRAFGSVGGTPRFIAKGKGAYIYDEDDNEYIDFVQSWGPLIFGHANEVIESALSLAIKDGLSFGAPTEKETTLVKQIIALSGSAEKMRLVNSGTEATMSALRLARAYSNKDDIIKFEGCYHGHSDSLLVSAGSGCATFG 163          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_FRASC (Glutamate-1-semialdehyde 2,1-aminomutase OS=Frankia sp. (strain CcI3) GN=hemL PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.184e-43
Identity = 88/159 (55.35%), Postives = 106/159 (66.67%), Query Frame = 2
Query:  221 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            SEE F  A+ ++PGGVNSPVRAF++VGG P    +  G ++ D DG  YID V SWGP I+GHA   V+ A+   +  GTSFG P   E  LAE+++  V  +E VR VNSGTEA M  +RLAR FTGR  I +F GCYHGH D  L  AGSGVATLGL
Sbjct:   10 SEELFRRAERVVPGGVNSPVRAFRAVGGTPRFMVAGNGPYLTDADGRTYIDLVCSWGPMILGHAHPAVVEAVSRAVSVGTSFGTPTPGEVELAELIVDRVGPVEKVRLVNSGTEATMSAVRLARGFTGRSTIIKFAGCYHGHVDALLASAGSGVATLGL 168          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_FRAAA (Glutamate-1-semialdehyde 2,1-aminomutase OS=Frankia alni (strain ACN14a) GN=hemL PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.184e-43
Identity = 88/159 (55.35%), Postives = 106/159 (66.67%), Query Frame = 2
Query:  221 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            SEE F  A+ ++PGGVNSPVRAF++VGG P    S  G ++ D DG  Y+D V SWGP I+GHA   V+ A+   +  GTSFG P   E  LAE+++  V  +E VR VNSGTEA M  +RLAR FTGR  I +F GCYHGH D  L  AGSGVATLGL
Sbjct:   12 SEELFRRAERVVPGGVNSPVRAFRAVGGTPRFMVSGNGPYLTDADGRTYVDLVCSWGPMILGHAHPAVVEAVTRAVSAGTSFGTPTPGEVELAELIVERVGPVEKVRLVNSGTEATMSAVRLARGFTGRSTIIKFAGCYHGHVDALLAAAGSGVATLGL 170          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_PSYA2 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=hemL PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.852e-43
Identity = 82/158 (51.90%), Postives = 108/158 (68.35%), Query Frame = 2
Query:  221 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            +E+ F  A + +PGGVNSPVRAF  VGG PI      GS ++D + N YIDYVGSWGP I+GHA  +V+ A+ +    G SFG P   E  +A+ +   VPS+EM+R  +SGTEA M  +RLAR +T R++I +FEGCYHGH+D  LVKAGSG+  +G
Sbjct:    5 NEQLFAQACKHIPGGVNSPVRAFAGVGGTPIFMHRANGSKIYDTEDNAYIDYVGSWGPMILGHAHPKVIDAVKKAADDGLSFGTPTPFETTVADKICEIVPSVEMIRMTSSGTEATMSAIRLARGYTQRDKIVKFEGCYHGHSDSLLVKAGSGMLDIG 162          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_FUSNN (Glutamate-1-semialdehyde 2,1-aminomutase OS=Fusobacterium nucleatum subsp. nucleatum GN=hemL PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.852e-43
Identity = 86/161 (53.42%), Postives = 113/161 (70.19%), Query Frame = 2
Query:  215 KNSEEAFNVAKELMPGGVNSPVRAFKSVGGQ-PIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            KNS + +  A EL+PGGVNSPVRAFKSV  + PI     +G+ +WD D NEYIDY+ SWGP I+GH   +V+  + + ++ G+S+G P   E  LAE+++  VPSIE VR   SGTEA M  +RLARA+T R +I +FEGCYHGH+D  LVK+GSG+ T G
Sbjct:    4 KNSIDLYKKAVELIPGGVNSPVRAFKSVNREAPIFIKKGQGAKIWDEDDNEYIDYICSWGPLILGHNHPKVIEEVKKIIENGSSYGLPTKYEVDLAELIVDIVPSIEKVRLTTSGTEATMSAVRLARAYTQRNKILKFEGCYHGHSDALLVKSGSGLLTEG 164          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_CORDI (Glutamate-1-semialdehyde 2,1-aminomutase OS=Corynebacterium diphtheriae GN=hemL PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.852e-43
Identity = 85/161 (52.80%), Postives = 110/161 (68.32%), Query Frame = 2
Query:  215 KNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            + S+E F  A++  PGGVNSPVRAF SVGG      S KGS ++D+DGNEY+D V SWGP ++G+A  +++ A+ +    G SFGAP   E  +AEM++    S+E VR VNSGTEA M  +RLAR FTGR ++ +F+GCYHGH D  L  AGSGVAT  L
Sbjct:    5 QRSQELFARAQQFTPGGVNSPVRAFGSVGGHARFIQSAKGSKLYDVDGNEYVDLVCSWGPMLLGNAHPEIVEAVQKAATNGLSFGAPTEAEVKIAEMIVDRT-SVEEVRMVNSGTEATMSAVRLARGFTGRPKVIKFDGCYHGHVDALLASAGSGVATFAL 164          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_STRGG (Glutamate-1-semialdehyde 2,1-aminomutase OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=hemL PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.725e-43
Identity = 84/159 (52.83%), Postives = 109/159 (68.55%), Query Frame = 2
Query:  221 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            S+  F+ A  + PGGVNSPVRAF++VGG P    S  G ++ D DG EY+D V SWGP I+GH+  +V+AA+ E + +GTSFG P   E  LAE +++ +  +E VR V+SGTEA M  +RLAR FTGR ++ +F GCYHGH D  L  AGSGVAT GL
Sbjct:   10 SQSLFDRASVVTPGGVNSPVRAFRAVGGTPRFMVSGTGPYLTDADGREYVDLVCSWGPMILGHSHPEVIAAVQEAVSRGTSFGTPGEGEVALAEEIVARIEPVEQVRLVSSGTEATMSAIRLARGFTGRAKVVKFAGCYHGHVDALLAAAGSGVATFGL 168          
The following BLAST results are available for this feature:
BLAST of FC876179 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GSA_CAMC19.803e-4447.47Glutamate-1-semialdehyde 2,1-aminomutase OS=Campyl... [more]
GSA_MYCS21.672e-4353.25Glutamate-1-semialdehyde 2,1-aminomutase OS=Mycoba... [more]
GSA_KOCRD1.672e-4353.46Glutamate-1-semialdehyde 2,1-aminomutase OS=Kocuri... [more]
GSA_HELHP1.672e-4355.84Glutamate-1-semialdehyde 2,1-aminomutase OS=Helico... [more]
GSA_FRASC2.184e-4355.35Glutamate-1-semialdehyde 2,1-aminomutase OS=Franki... [more]
GSA_FRAAA2.184e-4355.35Glutamate-1-semialdehyde 2,1-aminomutase OS=Franki... [more]
GSA_PSYA22.852e-4351.90Glutamate-1-semialdehyde 2,1-aminomutase OS=Psychr... [more]
GSA_FUSNN2.852e-4353.42Glutamate-1-semialdehyde 2,1-aminomutase OS=Fusoba... [more]
GSA_CORDI2.852e-4352.80Glutamate-1-semialdehyde 2,1-aminomutase OS=Coryne... [more]
GSA_STRGG3.725e-4352.83Glutamate-1-semialdehyde 2,1-aminomutase OS=Strept... [more]

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Properties
Property NameValue
Genbank descriptionC32001C05EF DevOvary1 Citrus clementina cDNA clone C32001C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876179 ID=FC876179; Name=FC876179; organism=Citrus clementina; type=EST; length=698bp
GACAGTTTCTTATCTTGATTGACCGAGGAAAAGAGAAAGAGACATCAGAG
AGAGTGACACAAAAATGGCAGCTACAATTACAGGGGTAGGAGTTGGGTTA
GGGCTTTCATGTTCATCAAAGCTCACCAAGAGATTTTCTTCTTCTACTGG
ATCCTCTCGCTGTAGTGTTAAAATGTCGGTCTCTGTTGAGGAGCAGAAGA
AAAATTTCACTTTAAAAAACTCTGAAGAAGCTTTCAATGTCGCCAAGGAA
TTGATGCCTGGAGGTGTAAATTCACCTGTACGTGCCTTCAAATCTGTTGG
TGGTCAACCTATTGTGTTTGATTCCGTCAAGGGCTCACACATGTGGGATA
TCGATGGCAACGAGTACATTGACTATGTAGGTTCTTGGGGGCCGGCAATT
ATTGGTCACGCAGATGATCAGGTACTAGCAGCCTTGGGTGAAACAATGAA
GAAAGGAACCAGCTTTGGTGCTCCTTGTCTTCTAGAGAATGTTCTTGCAG
AAATGGTAATCTCAGCTGTTCCAAGCATAGAAATGGTTCGTTTTGTTAAC
TCAGGCACAGAAGCATGCATGGGTGTGCTTCGCCTTGCCCGTGCCTTCAC
TGGGAGAGAGAGGATCATNCAATTTGAGGGTTGTTATCATGGCCATGCTG
ATCCATTTCTTGTCAAGGCTGGTAGTGGAGTTGCCACCCTAGGGCTTC
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