FC876179

Overview
NameFC876179
Unique NameFC876179
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_FRASN (Glutamate-1-semialdehyde 2,1-aminomutase OS=Frankia sp. (strain EAN1pec) GN=hemL PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.725e-43
Identity = 87/163 (53.37%), Postives = 106/163 (65.03%), Query Frame = 2
Query:  209 TLKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            T   S++ F  A+ ++PGGVNSPVRAF++VGG P    S  G  + D DG  Y+D V SWGP I+GHA   V+ A+     +GTSFG P   E  LAE+++  V  +E VR VNSGTEA M  +RLAR FTGR  I +F GCYHGH D  L  AGSGVATLGL
Sbjct:    6 TAPASDDLFRRAQRVVPGGVNSPVRAFRAVGGTPRFMTSGSGPRLVDADGRTYVDLVCSWGPMILGHAHPDVVQAITAAAARGTSFGTPTPGEVELAELIVERVAPVEQVRLVNSGTEATMSAIRLARGFTGRPTIVKFAGCYHGHVDALLASAGSGVATLGL 168          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_DECAR (Glutamate-1-semialdehyde 2,1-aminomutase OS=Dechloromonas aromatica (strain RCB) GN=hemL PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.725e-43
Identity = 85/158 (53.80%), Postives = 110/158 (69.62%), Query Frame = 2
Query:  221 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            +++ F  A+  +PGGVNSPVRAF+SVGG P  F    G+ + D DG  Y DYVGSWGP I+GHA   V+AA+   +  G SFGAP   E  +A+++   VPS++MVR V+SGTEA M  +RLAR  TGR+ + +FEGCYHGH+D  LVKAGSG+ T G
Sbjct:    5 NQQLFERAQRHIPGGVNSPVRAFRSVGGTPCFFQKGVGAKVQDADGKWYTDYVGSWGPMILGHAHPDVIAAVQAAVVDGLSFGAPTEKEVDIADLLCELVPSMDMVRLVSSGTEATMSAIRLARGHTGRDVLIKFEGCYHGHSDGLLVKAGSGLLTFG 162          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_ALHEH (Glutamate-1-semialdehyde 2,1-aminomutase OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=hemL PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.725e-43
Identity = 85/162 (52.47%), Postives = 110/162 (67.90%), Query Frame = 2
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            ++ S E F  A++ + GGVNSPVRAF  VGG+P      +G +++D DGN Y+DYV SWGP + GHA  +V+ A+      G SFGAP  +E  +AE + + +PS+E VR VNSGTEA M  LRLAR  TGRE+I +F GCYHGH D  LV+AGSG  TLG+
Sbjct:    1 MQRSHELFERARQHIVGGVNSPVRAFTGVGGEPPFIARAEGPYLYDEDGNRYVDYVCSWGPMVAGHAHPKVVRAVQAAAADGLSFGAPTEVEIRMAEKLKAMLPSLERVRMVNSGTEATMSALRLARGHTGREKIIKFRGCYHGHVDALLVQAGSGALTLGI 162          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_NOCFA (Glutamate-1-semialdehyde 2,1-aminomutase OS=Nocardia farcinica GN=hemL PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 6.354e-43
Identity = 88/159 (55.35%), Postives = 106/159 (66.67%), Query Frame = 2
Query:  221 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            S   F+ A +++PGGVNSPVRAF+SVGG P    S  G  + D DGNEY+D V SWGP I+GHA   V+ A+      G SFGAP   E  LAE +++ V  ++ VR VNSGTEA M  +RLAR FTGR +I +F GCYHGH D  L  AGSGVATLGL
Sbjct:   15 SARLFDRAAQVIPGGVNSPVRAFRSVGGTPRFIASADGYTLTDADGNEYVDLVCSWGPMILGHAHPAVVDAVRRAATGGLSFGAPTEAEVELAEHIVARVAPVDRVRLVNSGTEATMSAVRLARGFTGRTKIIKFAGCYHGHVDALLADAGSGVATLGL 173          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_THERP (Glutamate-1-semialdehyde 2,1-aminomutase OS=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) GN=hemL PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 8.299e-43
Identity = 82/162 (50.62%), Postives = 113/162 (69.75%), Query Frame = 2
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            ++NS   ++ A++  PGGVNSPVRAF++VG +P+V    +G+++ D DG  ++DY+ SWG  + GHA   V+  L E +++GTSFG     E  LA  ++++VP+IE+VRFVNSGTEA M  +RLARA TGR  + +F GCYHGH D  LV AGSGV T GL
Sbjct:    3 MENSGSLWDAARQFFPGGVNSPVRAFRAVGEEPVVAVRGEGAYLIDADGRRFLDYICSWGALLAGHAHPHVVDRLSEAIQRGTSFGLLSPYEVELARAIVASVPAIELVRFVNSGTEATMSAIRLARAVTGRNLVVKFAGCYHGHVDGLLVAAGSGVLTFGL 164          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_CAMLR (Glutamate-1-semialdehyde 2,1-aminomutase OS=Campylobacter lari (strain RM2100 / D67 / ATCC BAA-1060) GN=hemL PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 8.299e-43
Identity = 81/159 (50.94%), Postives = 112/159 (70.44%), Query Frame = 2
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVAT 688
            +KN+++AF  A E + GGV+SPVRAF SVG  P+     KG+++ DI+ N YIDYV SWGP + GH D+ V  A  + ++ G+SFGAP L E  LA+ ++   P ++ +RFV+SGTEA M  +RLAR F+ +++I +FEGCYHGH+D  LV AGSG AT
Sbjct:    1 MKNNKKAFEEACEYIAGGVDSPVRAFASVGSNPLFIKKGKGAYISDIEDNTYIDYVQSWGPLLFGHCDEDVEKACKKALEHGSSFGAPTLAETKLAKFILQDWPHLDKIRFVSSGTEATMSAIRLARGFSKKDKIIKFEGCYHGHSDSLLVSAGSGAAT 159          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_RHOE4 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Rhodococcus erythropolis (strain PR4 / NBRC 100887) GN=hemL PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.084e-42
Identity = 87/160 (54.37%), Postives = 103/160 (64.38%), Query Frame = 2
Query:  218 NSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            NS   F  A  ++PGGVNSPVRAF SVGG P       G  + D+DGN Y+D V SWGP I+GHA   V+ A+ E    G SFGAP   E  LAE +++ V  +E VR VNSGTEA M  +RLAR FTGR +I +F GCYHGH D  L  AGSG+AT GL
Sbjct:    5 NSARLFERAGNVIPGGVNSPVRAFGSVGGTPRFIREASGYTLTDVDGNNYVDLVSSWGPMILGHAHPAVVEAVREAALGGLSFGAPTEGEVALAEEIVARVAPVEKVRLVNSGTEATMSAVRLARGFTGRTKIIKFSGCYHGHVDALLADAGSGLATFGL 164          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_CORU7 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Corynebacterium urealyticum (strain ATCC 43042 / DSM 7109) GN=hemL PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.849e-42
Identity = 89/159 (55.97%), Postives = 106/159 (66.67%), Query Frame = 2
Query:  221 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            S  A   A+  +PGGVNSPVRAF SVGG      S  GS + D DG  Y+D V SWGP I GHA  +++ A+  T  +G SFGAP  LE  LAE +++   S+E VR VNSGTEA M  +RLAR FTGR++I +FEGCYHGH D  LV AGSGVAT GL
Sbjct:   19 SAAAMERARRFIPGGVNSPVRAFGSVGGTSPFITSASGSQLQDADGLSYVDLVCSWGPMIHGHAHPEIVEAVKSTASRGLSFGAPTSLEVDLAEEIVNRT-SVEKVRLVNSGTEATMSAVRLARGFTGRDKILKFEGCYHGHVDSLLVAAGSGVATFGL 176          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA1_BACSK (Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Bacillus clausii (strain KSM-K16) GN=hemL1 PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.849e-42
Identity = 82/161 (50.93%), Postives = 113/161 (70.19%), Query Frame = 2
Query:  215 KNSEEAFNVAKELMPGGVNSPVRAFKSVGG-QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            K SE  +  A+ ++ GGVNSP RA+K VGG  P+  +  +G++ +D+DGN YIDY+ ++GP I GHA   +  A+ +   KG  FG P  LEN  A+ + +A+PS+E VRFVNSGTEA M  +R+ARA+TG+E+I +F GCYHGH+D  LV AGSG +TLG
Sbjct:    4 KTSESLYQEAQHVIVGGVNSPSRAYKGVGGGTPVFMERGEGAYFYDVDGNRYIDYLAAYGPIITGHAHPVITKAIQDQAAKGVLFGTPTRLENEFAQELTNAIPSLEKVRFVNSGTEAVMTTIRVARAYTGKEKIIKFAGCYHGHSDLVLVAAGSGPSTLG 164          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA1_ANOFW (Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=hemL1 PE=3 SV=2)

HSP 1 Score: 172.555 bits (436), Expect = 1.849e-42
Identity = 83/165 (50.30%), Postives = 115/165 (69.70%), Query Frame = 2
Query:  203 NFTLKNSEEAFNVAKELMPGGVNSPVRAFKSVGG-QPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            NFT   SE+ +  A E + GGVNSP R++K+VGG  P+V +  +G++ WD+DGN+YIDY+ ++GP I GHA   +  A+    + G  +G P   E   A+M+  A+PS+E VRFVNSGTEA M  +R+ARA+TGR++I +F GCYHGH+D  LV AGSG +TLG
Sbjct:    2 NFT--KSEQLYQEALEHIVGGVNSPSRSYKAVGGGAPVVMERAQGAYFWDVDGNKYIDYLAAYGPIITGHAHPHITKAIQHAAENGVLYGTPTPYEITFAKMLKEAIPSLEKVRFVNSGTEAVMTTIRVARAYTGRDKIVKFAGCYHGHSDLVLVAAGSGPSTLG 164          
The following BLAST results are available for this feature:
BLAST of FC876179 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GSA_FRASN3.725e-4353.37Glutamate-1-semialdehyde 2,1-aminomutase OS=Franki... [more]
GSA_DECAR3.725e-4353.80Glutamate-1-semialdehyde 2,1-aminomutase OS=Dechlo... [more]
GSA_ALHEH3.725e-4352.47Glutamate-1-semialdehyde 2,1-aminomutase OS=Alkali... [more]
GSA_NOCFA6.354e-4355.35Glutamate-1-semialdehyde 2,1-aminomutase OS=Nocard... [more]
GSA_THERP8.299e-4350.62Glutamate-1-semialdehyde 2,1-aminomutase OS=Thermo... [more]
GSA_CAMLR8.299e-4350.94Glutamate-1-semialdehyde 2,1-aminomutase OS=Campyl... [more]
GSA_RHOE41.084e-4254.38Glutamate-1-semialdehyde 2,1-aminomutase OS=Rhodoc... [more]
GSA_CORU71.849e-4255.97Glutamate-1-semialdehyde 2,1-aminomutase OS=Coryne... [more]
GSA1_BACSK1.849e-4250.93Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Baci... [more]
GSA1_ANOFW1.849e-4250.30Glutamate-1-semialdehyde 2,1-aminomutase 1 OS=Anox... [more]

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Properties
Property NameValue
Genbank descriptionC32001C05EF DevOvary1 Citrus clementina cDNA clone C32001C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876179 ID=FC876179; Name=FC876179; organism=Citrus clementina; type=EST; length=698bp
GACAGTTTCTTATCTTGATTGACCGAGGAAAAGAGAAAGAGACATCAGAG
AGAGTGACACAAAAATGGCAGCTACAATTACAGGGGTAGGAGTTGGGTTA
GGGCTTTCATGTTCATCAAAGCTCACCAAGAGATTTTCTTCTTCTACTGG
ATCCTCTCGCTGTAGTGTTAAAATGTCGGTCTCTGTTGAGGAGCAGAAGA
AAAATTTCACTTTAAAAAACTCTGAAGAAGCTTTCAATGTCGCCAAGGAA
TTGATGCCTGGAGGTGTAAATTCACCTGTACGTGCCTTCAAATCTGTTGG
TGGTCAACCTATTGTGTTTGATTCCGTCAAGGGCTCACACATGTGGGATA
TCGATGGCAACGAGTACATTGACTATGTAGGTTCTTGGGGGCCGGCAATT
ATTGGTCACGCAGATGATCAGGTACTAGCAGCCTTGGGTGAAACAATGAA
GAAAGGAACCAGCTTTGGTGCTCCTTGTCTTCTAGAGAATGTTCTTGCAG
AAATGGTAATCTCAGCTGTTCCAAGCATAGAAATGGTTCGTTTTGTTAAC
TCAGGCACAGAAGCATGCATGGGTGTGCTTCGCCTTGCCCGTGCCTTCAC
TGGGAGAGAGAGGATCATNCAATTTGAGGGTTGTTATCATGGCCATGCTG
ATCCATTTCTTGTCAAGGCTGGTAGTGGAGTTGCCACCCTAGGGCTTC
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