FC876183

Overview
NameFC876183
Unique NameFC876183
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length755
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15147 contig Ccv1_Contig15147:7..761. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876183 vs. ExPASy Swiss-Prot
Match: FAD3E_PHAAU (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Phaseolus aureus GN=ARG1 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.129e-27
Identity = 56/135 (41.48%), Postives = 84/135 (62.22%), Query Frame = 1
Query:  193 PCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVP 597
            P + PPF ++ ++ AIP HC+E+S LRS SYV+ D+ +       A ++        S+  WP+YW  QG +   ++V+ H+CGH +FS+   L+  VG ILHS +LVPY  W+ SHR HH N G +++DE +VP
Sbjct:   24 PGAPPPFKIADIRAAIPKHCWEKSTLRSLSYVLRDVLVVTALAASAISFN-------SWFFWPLYWPAQGTMFWALFVLGHDCGHGSFSNSSKLNSFVGHILHSLILVPYNGWRISHRTHHQNHGHVEKDESWVP 151          
BLAST of FC876183 vs. ExPASy Swiss-Prot
Match: FAD3C_BRANA (Omega-3 fatty acid desaturase, chloroplastic (Fragment) OS=Brassica napus GN=FAD7 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 7.318e-27
Identity = 61/159 (38.36%), Postives = 94/159 (59.12%), Query Frame = 1
Query:  151 STPMKVDSD---PLKRVPCSK-------PPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVP 597
            +TP+ VDS    P++  P ++       PPF L+ ++ AIP HC+ ++  +S SYVV +L I F     A  Y++      ++L WP+YW  QG +   ++V+ H+CGH +FS+   L+  VG +LHS +LVPY  W+ SHR HH N G ++ DE + P
Sbjct:   24 TTPLTVDSSSSPPIEEEPKTQRFDPGAPPPFNLADIRAAIPKHCWVKNPWKSMSYVVRELAIVFALAAGA-AYLN------NWLVWPLYWIAQGTMFWALFVLGHDCGHGSFSNDPRLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHP 175          
BLAST of FC876183 vs. ExPASy Swiss-Prot
Match: FAD3C_RICCO (Omega-3 fatty acid desaturase, chloroplastic OS=Ricinus communis GN=FAD7A-1 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.248e-26
Identity = 54/131 (41.22%), Postives = 83/131 (63.36%), Query Frame = 1
Query:  205 PPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVP 597
            PPFTL+ ++ AIP HC+ ++  RS SYV+ D+ + F    +A  Y +      +++AWP+YW  QG +   ++V+ H+CGH +FS+   L+  VG +LHS +LVPY  W+ SHR HH N G ++ DE + P
Sbjct:  108 PPFTLADIRAAIPKHCWVKNPWRSMSYVLRDVVVVFGLAAVA-AYFN------NWVAWPLYWFCQGTMFWALFVLGHDCGHGSFSNNPKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHP 231          
BLAST of FC876183 vs. ExPASy Swiss-Prot
Match: FAD3C_ARATH (Omega-3 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD7 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.744e-26
Identity = 54/135 (40.00%), Postives = 83/135 (61.48%), Query Frame = 1
Query:  193 PCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVP 597
            P + PPF L+ ++ AIP HC+ ++  +S SYVV D+ I F     A  Y++      +++ WP+YW  QG +   ++V+ H+CGH +FS+   L+  VG +LHS +LVPY  W+ SHR HH N G ++ DE + P
Sbjct:   90 PGAPPPFNLADIRAAIPKHCWVKNPWKSLSYVVRDVAIVFALAAGA-AYLN------NWIVWPLYWLAQGTMFWALFVLGHDCGHGSFSNDPKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHP 217          
BLAST of FC876183 vs. ExPASy Swiss-Prot
Match: FAD3C_SOYBN (Omega-3 fatty acid desaturase, chloroplastic OS=Glycine max GN=FAD7 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.195e-26
Identity = 56/135 (41.48%), Postives = 82/135 (60.74%), Query Frame = 1
Query:  193 PCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVP 597
            P + PPF L+ ++ AIP HC+ +   RS SYVV D+ IA      A  Y++      ++L WP+YWA QG +   ++V+ H+CGH +FS+   L+  VG +LHS +LVPY  W+ SHR HH + G  + DE + P
Sbjct:   98 PGAPPPFNLADIRAAIPKHCWVKDPWRSMSYVVRDV-IAVFGLAAAAAYLN------NWLVWPLYWAAQGTMFWALFVLGHDCGHGSFSNNSKLNSVVGHLLHSSILVPYHGWRISHRTHHQHHGHAENDESWHP 225          
BLAST of FC876183 vs. ExPASy Swiss-Prot
Match: FAD3D_ARATH (Temperature-sensitive omega-3 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD8 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.057e-25
Identity = 59/154 (38.31%), Postives = 89/154 (57.79%), Query Frame = 1
Query:  142 AVPSTPMKVDS--DPLKRVPCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVP 597
            A P T ++  S  D  +  P + PPF L+ ++ AIP HC+ ++   S SYVV D+ I F    +A  Y +      ++L WP+YW  QG +   ++V+ H+CGH +FS+   L+   G +LHS +LVPY  W+ SHR HH N G ++ DE + P
Sbjct:   64 ATPLTTLQSPSEEDTERFDPGAPPPFNLADIRAAIPKHCWVKNPWMSMSYVVRDVAIVFGLAAVA-AYFN------NWLLWPLYWFAQGTMFWALFVLGHDCGHGSFSNDPRLNSVAGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHP 210          
BLAST of FC876183 vs. ExPASy Swiss-Prot
Match: FAD3C_SESIN (Omega-3 fatty acid desaturase, chloroplastic OS=Sesamum indicum GN=FAD7 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.057e-25
Identity = 54/135 (40.00%), Postives = 81/135 (60.00%), Query Frame = 1
Query:  193 PCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVP 597
            P + PPF LS +++AIP HC+ +   RS  YVV D+ + F    +A  Y +      +++ WP+YW  Q  +   ++V+ H+CGH +FS+   L+  VG ILHS +LVPY  W+ SHR HH N G ++ DE + P
Sbjct:   94 PGAPPPFKLSDIREAIPKHCWVKDPWRSMGYVVRDVAVVFGLAAVA-AYFN------NWVVWPLYWFAQSTMFWALFVLGHDCGHGSFSNDPKLNSVVGHILHSSILVPYHGWRISHRTHHQNHGHVENDESWHP 221          
BLAST of FC876183 vs. ExPASy Swiss-Prot
Match: FAD3E_SOYBN (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Glycine max GN=FAD3 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.850e-25
Identity = 52/135 (38.52%), Postives = 82/135 (60.74%), Query Frame = 1
Query:  193 PCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVP 597
            P + PPF +++++ +IP HC+ ++  RS SYV+ D+ +       A        H  ++L W +Y  +QG +   ++V+ H+CGH +FSD   L+  VG ILHS +LVPY  W+ SHR HH N G +++DE +VP
Sbjct:   27 PSAPPPFKIAEIRASIPKHCWVKNPWRSLSYVLRDVLVIAALVAAAI-------HFDNWLLWLIYCPIQGTMFWALFVLGHDCGHGSFSDSPLLNSLVGHILHSSILVPYHGWRISHRTHHQNHGHIEKDESWVP 154          
BLAST of FC876183 vs. ExPASy Swiss-Prot
Match: DESA_SYNY3 (Fatty acid desaturase OS=Synechocystis sp. (strain PCC 6803) GN=desA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.407e-16
Identity = 47/153 (30.72%), Postives = 75/153 (49.02%), Query Frame = 1
Query:  148 PSTPMKVDSDPLKRVPCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPLSYLAW---PVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVP 597
            P TP    S+P + +   K    L  + K +P  CFE+   ++++ V+  L    V Y             + YL W   P+ W   G  LTG +VV H+CGH +F+  +W++D VG I  + L+ P+ SW+  H  HH +T  ++ D  + P
Sbjct:    7 PLTPTVTPSNPDRPIADLK----LQDIIKTLPKECFEKKASKAWASVLITLGAIAVGYL-----------GIIYLPWYCLPITWIWTGTALTGAFVVGHDCGHRSFAKKRWVNDLVGHIAFAPLIYPFHSWRLLHDHHHLHTNKIEVDNAWDP 144          
BLAST of FC876183 vs. ExPASy Swiss-Prot
Match: DESA_SPIPL (Fatty acid desaturase OS=Spirulina platensis GN=desA PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.015e-13
Identity = 30/76 (39.47%), Postives = 45/76 (59.21%), Query Frame = 1
Query:  379 PVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVPKQK 606
            PV W   G  LTG +V+ H+CGH +FS   W++D VG IL   ++ P+ SW+  H +HH  T  ++ D  + P +K
Sbjct:   71 PVVWVFTGTALTGFFVIGHDCGHRSFSRNVWVNDWVGHILFLPIIYPFHSWRIGHNQHHKYTNRMELDNAWQPWRK 146          
The following BLAST results are available for this feature:
BLAST of FC876183 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
FAD3E_PHAAU1.129e-2741.48Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
FAD3C_BRANA7.318e-2738.36Omega-3 fatty acid desaturase, chloroplastic (Frag... [more]
FAD3C_RICCO1.248e-2641.22Omega-3 fatty acid desaturase, chloroplastic OS=Ri... [more]
FAD3C_ARATH4.744e-2640.00Omega-3 fatty acid desaturase, chloroplastic OS=Ar... [more]
FAD3C_SOYBN6.195e-2641.48Omega-3 fatty acid desaturase, chloroplastic OS=Gl... [more]
FAD3D_ARATH1.057e-2538.31Temperature-sensitive omega-3 fatty acid desaturas... [more]
FAD3C_SESIN1.057e-2540.00Omega-3 fatty acid desaturase, chloroplastic OS=Se... [more]
FAD3E_SOYBN6.850e-2538.52Omega-3 fatty acid desaturase, endoplasmic reticul... [more]
DESA_SYNY33.407e-1630.72Fatty acid desaturase OS=Synechocystis sp. (strain... [more]
DESA_SPIPL6.015e-1339.47Fatty acid desaturase OS=Spirulina platensis GN=de... [more]

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Properties
Property NameValue
Genbank descriptionC32001C11EF DevOvary1 Citrus clementina cDNA clone C32001C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876183 ID=FC876183; Name=FC876183; organism=Citrus clementina; type=EST; length=755bp
GAACGTTTCAACTCACAACGCGGCCGGCGAAGGCGAGAAAGAGAGAGGGA
GAGAAAGTGAGGTCTCTCATTTTCTTCTTCTTTGCAGTCCAAGTGCTTCG
CTTCTTCAGGTTGACGAACAATGGGTGCAGGTGGACGAATGGCTGTACCT
TCAACGCCCATGAAGGTGGACTCTGATCCCTTGAAGCGAGTTCCATGCTC
AAAGCCACCATTCACACTCAGCCAAGTAAAGAAAGCTATCCCACCTCACT
GTTTTGAGCGGTCTGTTCTCCGTTCATTCTCCTACGTTGTTCATGACCTC
ACCATTGCCTTTGTCTTTTACTACATTGCCGACACTTACATTCACCAACT
TCCTCACCCTCTCTCTTATCTGGCCTGGCCAGTTTACTGGGCTCTTCAAG
GCTGCATTTTAACTGGAGTTTGGGTTGTAGCTCATGAATGTGGCCACCAT
GCCTTCAGTGACTATCAATGGCTTGACGACACTGTTGGCCTTATCCTCCA
CTCTTGCCTCCTTGTCCCCTACTTCTCTTGGAAGTATAGCCATCGCCGCC
ATCACTCCAATACAGGATCCCTTGATCGTGATGAAGTATTTGTCCCCAAG
CAAAAAACCGCCATTGGTTGGTATGCCAAGTACCTTAACAACCCACTTGG
CCGAGTCATAACACTTACTGTCACCCTCACCCTTGGCTGGNCTTTGTACC
TGGCATTTCATGTATCCGGTAGGCCTTATGATAGATTTGCTTGCCACTTT
GATCC
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