FC876183
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC876183 vs. ExPASy Swiss-Prot
Match: FAD3E_PHAAU (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Phaseolus aureus GN=ARG1 PE=2 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 1.129e-27 Identity = 56/135 (41.48%), Postives = 84/135 (62.22%), Query Frame = 1 Query: 193 PCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVP 597 P + PPF ++ ++ AIP HC+E+S LRS SYV+ D+ + A ++ S+ WP+YW QG + ++V+ H+CGH +FS+ L+ VG ILHS +LVPY W+ SHR HH N G +++DE +VP Sbjct: 24 PGAPPPFKIADIRAAIPKHCWEKSTLRSLSYVLRDVLVVTALAASAISFN-------SWFFWPLYWPAQGTMFWALFVLGHDCGHGSFSNSSKLNSFVGHILHSLILVPYNGWRISHRTHHQNHGHVEKDESWVP 151
BLAST of FC876183 vs. ExPASy Swiss-Prot
Match: FAD3C_BRANA (Omega-3 fatty acid desaturase, chloroplastic (Fragment) OS=Brassica napus GN=FAD7 PE=2 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 7.318e-27 Identity = 61/159 (38.36%), Postives = 94/159 (59.12%), Query Frame = 1 Query: 151 STPMKVDSD---PLKRVPCSK-------PPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVP 597 +TP+ VDS P++ P ++ PPF L+ ++ AIP HC+ ++ +S SYVV +L I F A Y++ ++L WP+YW QG + ++V+ H+CGH +FS+ L+ VG +LHS +LVPY W+ SHR HH N G ++ DE + P Sbjct: 24 TTPLTVDSSSSPPIEEEPKTQRFDPGAPPPFNLADIRAAIPKHCWVKNPWKSMSYVVRELAIVFALAAGA-AYLN------NWLVWPLYWIAQGTMFWALFVLGHDCGHGSFSNDPRLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHP 175
BLAST of FC876183 vs. ExPASy Swiss-Prot
Match: FAD3C_RICCO (Omega-3 fatty acid desaturase, chloroplastic OS=Ricinus communis GN=FAD7A-1 PE=2 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 1.248e-26 Identity = 54/131 (41.22%), Postives = 83/131 (63.36%), Query Frame = 1 Query: 205 PPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVP 597 PPFTL+ ++ AIP HC+ ++ RS SYV+ D+ + F +A Y + +++AWP+YW QG + ++V+ H+CGH +FS+ L+ VG +LHS +LVPY W+ SHR HH N G ++ DE + P Sbjct: 108 PPFTLADIRAAIPKHCWVKNPWRSMSYVLRDVVVVFGLAAVA-AYFN------NWVAWPLYWFCQGTMFWALFVLGHDCGHGSFSNNPKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHP 231
BLAST of FC876183 vs. ExPASy Swiss-Prot
Match: FAD3C_ARATH (Omega-3 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD7 PE=1 SV=1) HSP 1 Score: 118.242 bits (295), Expect = 4.744e-26 Identity = 54/135 (40.00%), Postives = 83/135 (61.48%), Query Frame = 1 Query: 193 PCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVP 597 P + PPF L+ ++ AIP HC+ ++ +S SYVV D+ I F A Y++ +++ WP+YW QG + ++V+ H+CGH +FS+ L+ VG +LHS +LVPY W+ SHR HH N G ++ DE + P Sbjct: 90 PGAPPPFNLADIRAAIPKHCWVKNPWKSLSYVVRDVAIVFALAAGA-AYLN------NWIVWPLYWLAQGTMFWALFVLGHDCGHGSFSNDPKLNSVVGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHP 217
BLAST of FC876183 vs. ExPASy Swiss-Prot
Match: FAD3C_SOYBN (Omega-3 fatty acid desaturase, chloroplastic OS=Glycine max GN=FAD7 PE=2 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 6.195e-26 Identity = 56/135 (41.48%), Postives = 82/135 (60.74%), Query Frame = 1 Query: 193 PCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVP 597 P + PPF L+ ++ AIP HC+ + RS SYVV D+ IA A Y++ ++L WP+YWA QG + ++V+ H+CGH +FS+ L+ VG +LHS +LVPY W+ SHR HH + G + DE + P Sbjct: 98 PGAPPPFNLADIRAAIPKHCWVKDPWRSMSYVVRDV-IAVFGLAAAAAYLN------NWLVWPLYWAAQGTMFWALFVLGHDCGHGSFSNNSKLNSVVGHLLHSSILVPYHGWRISHRTHHQHHGHAENDESWHP 225
BLAST of FC876183 vs. ExPASy Swiss-Prot
Match: FAD3D_ARATH (Temperature-sensitive omega-3 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD8 PE=2 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 1.057e-25 Identity = 59/154 (38.31%), Postives = 89/154 (57.79%), Query Frame = 1 Query: 142 AVPSTPMKVDS--DPLKRVPCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVP 597 A P T ++ S D + P + PPF L+ ++ AIP HC+ ++ S SYVV D+ I F +A Y + ++L WP+YW QG + ++V+ H+CGH +FS+ L+ G +LHS +LVPY W+ SHR HH N G ++ DE + P Sbjct: 64 ATPLTTLQSPSEEDTERFDPGAPPPFNLADIRAAIPKHCWVKNPWMSMSYVVRDVAIVFGLAAVA-AYFN------NWLLWPLYWFAQGTMFWALFVLGHDCGHGSFSNDPRLNSVAGHLLHSSILVPYHGWRISHRTHHQNHGHVENDESWHP 210
BLAST of FC876183 vs. ExPASy Swiss-Prot
Match: FAD3C_SESIN (Omega-3 fatty acid desaturase, chloroplastic OS=Sesamum indicum GN=FAD7 PE=2 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 1.057e-25 Identity = 54/135 (40.00%), Postives = 81/135 (60.00%), Query Frame = 1 Query: 193 PCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVP 597 P + PPF LS +++AIP HC+ + RS YVV D+ + F +A Y + +++ WP+YW Q + ++V+ H+CGH +FS+ L+ VG ILHS +LVPY W+ SHR HH N G ++ DE + P Sbjct: 94 PGAPPPFKLSDIREAIPKHCWVKDPWRSMGYVVRDVAVVFGLAAVA-AYFN------NWVVWPLYWFAQSTMFWALFVLGHDCGHGSFSNDPKLNSVVGHILHSSILVPYHGWRISHRTHHQNHGHVENDESWHP 221
BLAST of FC876183 vs. ExPASy Swiss-Prot
Match: FAD3E_SOYBN (Omega-3 fatty acid desaturase, endoplasmic reticulum OS=Glycine max GN=FAD3 PE=2 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 6.850e-25 Identity = 52/135 (38.52%), Postives = 82/135 (60.74%), Query Frame = 1 Query: 193 PCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVP 597 P + PPF +++++ +IP HC+ ++ RS SYV+ D+ + A H ++L W +Y +QG + ++V+ H+CGH +FSD L+ VG ILHS +LVPY W+ SHR HH N G +++DE +VP Sbjct: 27 PSAPPPFKIAEIRASIPKHCWVKNPWRSLSYVLRDVLVIAALVAAAI-------HFDNWLLWLIYCPIQGTMFWALFVLGHDCGHGSFSDSPLLNSLVGHILHSSILVPYHGWRISHRTHHQNHGHIEKDESWVP 154
BLAST of FC876183 vs. ExPASy Swiss-Prot
Match: DESA_SYNY3 (Fatty acid desaturase OS=Synechocystis sp. (strain PCC 6803) GN=desA PE=3 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 3.407e-16 Identity = 47/153 (30.72%), Postives = 75/153 (49.02%), Query Frame = 1 Query: 148 PSTPMKVDSDPLKRVPCSKPPFTLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPLSYLAW---PVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVP 597 P TP S+P + + K L + K +P CFE+ ++++ V+ L V Y + YL W P+ W G LTG +VV H+CGH +F+ +W++D VG I + L+ P+ SW+ H HH +T ++ D + P Sbjct: 7 PLTPTVTPSNPDRPIADLK----LQDIIKTLPKECFEKKASKAWASVLITLGAIAVGYL-----------GIIYLPWYCLPITWIWTGTALTGAFVVGHDCGHRSFAKKRWVNDLVGHIAFAPLIYPFHSWRLLHDHHHLHTNKIEVDNAWDP 144
BLAST of FC876183 vs. ExPASy Swiss-Prot
Match: DESA_SPIPL (Fatty acid desaturase OS=Spirulina platensis GN=desA PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 6.015e-13 Identity = 30/76 (39.47%), Postives = 45/76 (59.21%), Query Frame = 1 Query: 379 PVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVPKQK 606 PV W G LTG +V+ H+CGH +FS W++D VG IL ++ P+ SW+ H +HH T ++ D + P +K Sbjct: 71 PVVWVFTGTALTGFFVIGHDCGHRSFSRNVWVNDWVGHILFLPIIYPFHSWRIGHNQHHKYTNRMELDNAWQPWRK 146 The following BLAST results are available for this feature:
BLAST of FC876183 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 24
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876183 ID=FC876183; Name=FC876183; organism=Citrus clementina; type=EST; length=755bpback to top |