FC876183

Overview
NameFC876183
Unique NameFC876183
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length755
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15147 contig Ccv1_Contig15147:7..761. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876183 vs. ExPASy Swiss-Prot
Match: FAD6C_SOYBN (Omega-6 fatty acid desaturase, chloroplastic OS=Glycine max PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.685e-12
Identity = 44/147 (29.93%), Postives = 70/147 (47.62%), Query Frame = 1
Query:  214 TLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVPKQKTAIGWYAKYLNNPLGR 654
            TL  V   +P   FE   ++++  V+    I+   Y +    I + P  L  LAW   W   G  +TG +V+ H+C H +FS  + ++D VG +    L+ PY  W++ H RHH+ T  L  D  + P       W  ++ + PL R
Sbjct:  100 TLKDVINPLPKEVFEIDDVKAWKSVL----ISVTSYALGLFMISKAPWYLLPLAW--VWT--GTAITGFFVIGHDCAHRSFSSNKLVEDIVGTLAFMPLIYPYEPWRFKHDRHHAKTNMLREDTAWHPV------WKDEFESTPLLR 232          
BLAST of FC876183 vs. ExPASy Swiss-Prot
Match: FAD6C_SPIOL (Omega-6 fatty acid desaturase, chloroplastic OS=Spinacia oleracea GN=FAD6 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.134e-11
Identity = 37/134 (27.61%), Postives = 67/134 (50.00%), Query Frame = 1
Query:  214 TLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVPKQKTAI 615
            T+  +  ++P   FE +  +++  V+    I+   Y +    I + P    +   P+ WA  G  +TG +V+ H+C H +FS  + ++D VG +    L+ PY  W++ H +HH+ T  L  D  ++P  K  I
Sbjct:  106 TMRDIITSLPKQVFEINDTKAWGTVL----ISVTSYALGIFMIAKAP----WYLLPLAWAWTGTAITGFFVIGHDCAHKSFSKNKLVEDIVGTLAFMPLIYPYEPWRFKHDQHHTKTNMLREDTAWLPIMKEDI 231          
BLAST of FC876183 vs. ExPASy Swiss-Prot
Match: FAD6C_ARATH (Omega-6 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD6 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.134e-11
Identity = 38/128 (29.69%), Postives = 62/128 (48.44%), Query Frame = 1
Query:  214 TLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVP 597
            TL  +   +P   FE   L++   V+    I+   Y +    I + P    +   P+ WA  G  +TG +V+ H+C H +FS  + ++D VG +    L+ PY  W++ H RHH+ T  L  D  + P
Sbjct:  106 TLKDIMDTLPKEVFEIDDLKALKSVL----ISVTSYTLGLFMIAKSP----WYLLPLAWAWTGTAITGFFVIGHDCAHKSFSKNKLVEDIVGTLAFLPLVYPYEPWRFKHDRHHAKTNMLVHDTAWQP 225          
BLAST of FC876183 vs. ExPASy Swiss-Prot
Match: FAD6C_BRANA (Omega-6 fatty acid desaturase, chloroplastic OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.935e-11
Identity = 37/128 (28.91%), Postives = 63/128 (49.22%), Query Frame = 1
Query:  214 TLSQVKKAIPPHCFERSVLRSFSYVVHDLTIAFVFYYIADTYIHQLPHPLSYLAWPVYWALQGCILTGVWVVAHECGHHAFSDYQWLDDTVGLILHSCLLVPYFSWKYSHRRHHSNTGSLDRDEVFVP 597
            TL  +   +P   FE   ++++  V+    I+   Y +    I + P    +   P+ WA  G  +TG +V+ H+C H +FS  + ++D VG +    L+ PY  W++ H RHH+ T  L  D  + P
Sbjct:  101 TLKDIMDTLPKEVFEIDDVKAWKSVL----ISVTSYALGLFMIAKAP----WYLLPLAWAWTGTAVTGFFVIGHDCAHKSFSKNKLVEDIVGTLAFLPLVYPYEPWRFKHDRHHAKTNMLVHDTAWQP 220          
The following BLAST results are available for this feature:
BLAST of FC876183 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
FAD6C_SOYBN8.685e-1229.93Omega-6 fatty acid desaturase, chloroplastic OS=Gl... [more]
FAD6C_SPIOL1.134e-1127.61Omega-6 fatty acid desaturase, chloroplastic OS=Sp... [more]
FAD6C_ARATH1.134e-1129.69Omega-6 fatty acid desaturase, chloroplastic OS=Ar... [more]
FAD6C_BRANA1.935e-1128.91Omega-6 fatty acid desaturase, chloroplastic OS=Br... [more]

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Properties
Property NameValue
Genbank descriptionC32001C11EF DevOvary1 Citrus clementina cDNA clone C32001C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876183 ID=FC876183; Name=FC876183; organism=Citrus clementina; type=EST; length=755bp
GAACGTTTCAACTCACAACGCGGCCGGCGAAGGCGAGAAAGAGAGAGGGA
GAGAAAGTGAGGTCTCTCATTTTCTTCTTCTTTGCAGTCCAAGTGCTTCG
CTTCTTCAGGTTGACGAACAATGGGTGCAGGTGGACGAATGGCTGTACCT
TCAACGCCCATGAAGGTGGACTCTGATCCCTTGAAGCGAGTTCCATGCTC
AAAGCCACCATTCACACTCAGCCAAGTAAAGAAAGCTATCCCACCTCACT
GTTTTGAGCGGTCTGTTCTCCGTTCATTCTCCTACGTTGTTCATGACCTC
ACCATTGCCTTTGTCTTTTACTACATTGCCGACACTTACATTCACCAACT
TCCTCACCCTCTCTCTTATCTGGCCTGGCCAGTTTACTGGGCTCTTCAAG
GCTGCATTTTAACTGGAGTTTGGGTTGTAGCTCATGAATGTGGCCACCAT
GCCTTCAGTGACTATCAATGGCTTGACGACACTGTTGGCCTTATCCTCCA
CTCTTGCCTCCTTGTCCCCTACTTCTCTTGGAAGTATAGCCATCGCCGCC
ATCACTCCAATACAGGATCCCTTGATCGTGATGAAGTATTTGTCCCCAAG
CAAAAAACCGCCATTGGTTGGTATGCCAAGTACCTTAACAACCCACTTGG
CCGAGTCATAACACTTACTGTCACCCTCACCCTTGGCTGGNCTTTGTACC
TGGCATTTCATGTATCCGGTAGGCCTTATGATAGATTTGCTTGCCACTTT
GATCC
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