FC876184

Overview
NameFC876184
Unique NameFC876184
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length671
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9382 contig Ccv1_Contig9382:1..671. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876184 vs. ExPASy Swiss-Prot
Match: ABCG1_MOUSE (ATP-binding cassette sub-family G member 1 OS=Mus musculus GN=Abcg1 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.362e-12
Identity = 37/98 (37.76%), Postives = 59/98 (60.20%), Query Frame = 2
Query:  371 KSVRFLLNNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYK--FAYVRQEDLFFSQLTVRETLSLAAELQLPE 658
            K  + LL  +SG+   G L+AIMGPSG+GK+TL+N+LAG         + G + +NG P   + ++    Y+ Q+D+    LTV+E + ++A L+L E
Sbjct:   95 KGYKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYRETG----MKGAVLINGMPRDLRCFRKVSCYIMQDDMLLPHLTVQEAMMVSAHLKLQE 188          
BLAST of FC876184 vs. ExPASy Swiss-Prot
Match: AB10G_ARATH (ABC transporter G family member 10 OS=Arabidopsis thaliana GN=ABCG10 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.362e-12
Identity = 42/98 (42.86%), Postives = 61/98 (62.24%), Query Frame = 2
Query:  365 SSKSVRFLLNNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYK--FAYVRQEDLFFSQLTVRETLSLAAELQL 652
            S K  + +L +VS +A+   + AI GPSG+GKTTLL +LAG++       +SG + VNG+P     Y+    +V QED  F  LTV+ETL+ +A L+L
Sbjct:   43 SEKEEKVILKDVSCDARSAEITAIAGPSGAGKTTLLEILAGKVSHG---KVSGQVLVNGRPMDGPEYRRVSGFVPQEDALFPFLTVQETLTYSALLRL 137          
BLAST of FC876184 vs. ExPASy Swiss-Prot
Match: WHITE_ANOAL (Protein white OS=Anopheles albimanus GN=W PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.003e-12
Identity = 48/126 (38.10%), Postives = 71/126 (56.35%), Query Frame = 2
Query:  287 GEAPVDGKVF-PVTIR*QN-ITCSLSDKSSKSVRFLLNNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKP--SSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQL 652
            G+A +DGK   P+  R ++  T     K     + LL NV+G A+ G LLA+MG SG+GKTTLLN LA +     ++  + +  +NG P  +     + AYV+Q+DLF   LT +E L   A L++
Sbjct:   83 GQAAIDGKSREPLCSRLRHCFTRQRLVKDFNPRKHLLKNVTGVARSGELLAVMGSSGAGKTTLLNELAFRSPPGVKISPNAIRTLNGVPVTAEQMRARCAYVQQDDLFIPSLTTKEHLMFQAMLRM 208          
BLAST of FC876184 vs. ExPASy Swiss-Prot
Match: ABCG1_HUMAN (ATP-binding cassette sub-family G member 1 OS=Homo sapiens GN=ABCG1 PE=2 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 7.003e-12
Identity = 37/98 (37.76%), Postives = 59/98 (60.20%), Query Frame = 2
Query:  371 KSVRFLLNNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYK--FAYVRQEDLFFSQLTVRETLSLAAELQLPE 658
            K  + LL  +SG+   G L+AIMGPSG+GK+TL+N+LAG         + G + +NG P   + ++    Y+ Q+D+    LTV+E + ++A L+L E
Sbjct:   95 KGYKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYRETG----MKGAVLINGLPRDLRCFRKVSCYIMQDDMLLPHLTVQEAMMVSAHLKLQE 188          
BLAST of FC876184 vs. ExPASy Swiss-Prot
Match: ABCG8_DICDI (ABC transporter G family member 8 OS=Dictyostelium discoideum GN=abcG8 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.146e-12
Identity = 44/107 (41.12%), Postives = 65/107 (60.75%), Query Frame = 2
Query:  356 SDKSSKSVRFLLNNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYK--FAYVRQEDLFFSQLTVRETLSLAAELQLPEILSV 670
            ++ S++    +L NV G  + G L+A+MGPSGSGK+TLL++LA +        ++G L VNGK    +AYK   +YV QED+     TV ETL   A+L+LP +  +
Sbjct:   62 TENSNEKEITILYNVGGVIEKGELVALMGPSGSGKSTLLDILAQRKSTG---KITGQLLVNGK-EIGEAYKKYCSYVTQEDVLLQTYTVFETLKFYADLKLPGVSEI 164          
BLAST of FC876184 vs. ExPASy Swiss-Prot
Match: AB5G_ARATH (ABC transporter G family member 5 OS=Arabidopsis thaliana GN=ABCG5 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.146e-12
Identity = 41/102 (40.20%), Postives = 62/102 (60.78%), Query Frame = 2
Query:  353 LSDKSSKSVRFLLNNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYK--FAYVRQEDLFFSQLTVRETLSLAAELQL 652
            L D++   V+ +L  V+  AKP  +LAI+GPSG+GK++LL +LA +L+       +G + VN +P     +K    YV Q+D  F  LTV ETL  +A+L+L
Sbjct:   51 LEDETGNKVKHVLKGVTCRAKPWEILAIVGPSGAGKSSLLEILAARLIPQ-----TGSVYVNKRPVDRANFKKISGYVTQKDTLFPLLTVEETLLFSAKLRL 147          
BLAST of FC876184 vs. ExPASy Swiss-Prot
Match: ABCGI_DICDI (ABC transporter G family member 18 OS=Dictyostelium discoideum GN=abcG18 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.475e-11
Identity = 52/154 (33.77%), Postives = 86/154 (55.84%), Query Frame = 2
Query:  224 DDDSAYGDDDERNDVAEANGDGEAPVDGKVFPVT--IR*QNITCSLS-DKSSKSVRF-LLNNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYK-FAYVRQEDLFFSQLTVRETLSLAAELQLPEILSV 670
            +DDS  G++ E  DV +    G+A +  K  P+   ++ +++   +   K  K+ R  LLN ++G  KPG L+A+MGPSG+GK+TLL+VLA +       H  G + +NG+  +    +  AYV Q D+     TVRE +  +A+ +LP  + +
Sbjct:  774 NDDSDSGEEMESVDV-DVKSSGKANLR-KDIPIGCYMQWKDLVYEVDVKKDGKNQRLRLLNGINGYVKPGMLVALMGPSGAGKSTLLDVLANRKTGG---HTKGQILINGQERTKYFTRTSAYVEQMDILTPVSTVREVILFSAKNRLPNSVPI 922          
BLAST of FC876184 vs. ExPASy Swiss-Prot
Match: YN99_YEAST (Uncharacterized ABC transporter ATP-binding protein/permease YNR070W OS=Saccharomyces cerevisiae GN=YNR070W PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.539e-11
Identity = 45/137 (32.85%), Postives = 81/137 (59.12%), Query Frame = 2
Query:  254 ERNDVAEANGDG-EAPVDGKVFPVTIR*QNITCSLSDKSSKSVRFLLNNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKP-SSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPE 658
            +  ++A +N D   A  +G         +N++ ++   S +  R LL++VSG   PG L A++G SG+GKTTLLN LA + + +    ++G + V+G P  ++   +  YV+Q+DL  ++LTV+E+L  +A ++ P+
Sbjct:  704 DMKEIASSNDDSTSADFEGLESTGVFIWKNVSFTIPHSSGQ--RKLLDSVSGYCVPGTLTALIGESGAGKTTLLNTLAQRNVGT----ITGDMLVDGLPMDASFKRRTGYVQQQDLHVAELTVKESLQFSARMRRPQ 834          
BLAST of FC876184 vs. ExPASy Swiss-Prot
Match: AB8G_ARATH (ABC transporter G family member 8 OS=Arabidopsis thaliana GN=ABCG8 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.539e-11
Identity = 42/93 (45.16%), Postives = 59/93 (63.44%), Query Frame = 2
Query:  383 FLLNNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYK--FAYVRQEDLFFSQLTVRETLSLAAELQLP 655
            F+L N++  A P  +LA++GPSG+GK+TLL++LA +   SP    SG + +N  P +  +Y+   +YV Q D FF  LTV ET S AA L LP
Sbjct:   43 FILRNITLTAHPTEILAVVGPSGAGKSTLLDILASK--TSP---TSGSILLNSIPINPSSYRKISSYVPQHDSFFPLLTVSETFSFAACLLLP 130          
BLAST of FC876184 vs. ExPASy Swiss-Prot
Match: PDR12_YEAST (ATP-dependent permease PDR12 OS=Saccharomyces cerevisiae GN=PDR12 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.928e-11
Identity = 43/95 (45.26%), Postives = 62/95 (65.26%), Query Frame = 2
Query:  374 SVRFLLNNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKP---SSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQ 649
            + R LL++V G  KPG++ A+MG SG+GKTTLLNVLA ++       ++G + VN KP   S N++    YV Q D   ++L+VRE+L  AAEL+
Sbjct:  856 ATRKLLSDVFGYVKPGKMTALMGESGAGKTTLLNVLAQRINMGV---ITGDMLVNAKPLPASFNRS--CGYVAQADNHMAELSVRESLRFAAELR 945          
The following BLAST results are available for this feature:
BLAST of FC876184 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
ABCG1_MOUSE5.362e-1237.76ATP-binding cassette sub-family G member 1 OS=Mus ... [more]
AB10G_ARATH5.362e-1242.86ABC transporter G family member 10 OS=Arabidopsis ... [more]
WHITE_ANOAL7.003e-1238.10Protein white OS=Anopheles albimanus GN=W PE=3 SV=... [more]
ABCG1_HUMAN7.003e-1237.76ATP-binding cassette sub-family G member 1 OS=Homo... [more]
ABCG8_DICDI9.146e-1241.12ABC transporter G family member 8 OS=Dictyostelium... [more]
AB5G_ARATH9.146e-1240.20ABC transporter G family member 5 OS=Arabidopsis t... [more]
ABCGI_DICDI3.475e-1133.77ABC transporter G family member 18 OS=Dictyosteliu... [more]
YN99_YEAST4.539e-1132.85Uncharacterized ABC transporter ATP-binding protei... [more]
AB8G_ARATH4.539e-1145.16ABC transporter G family member 8 OS=Arabidopsis t... [more]
PDR12_YEAST5.928e-1145.26ATP-dependent permease PDR12 OS=Saccharomyces cere... [more]

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Properties
Property NameValue
Genbank descriptionC32001D01EF DevOvary1 Citrus clementina cDNA clone C32001D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876184 ID=FC876184; Name=FC876184; organism=Citrus clementina; type=EST; length=671bp
GCTACTCCAGTTGCACTGCTGCAACGGAGGCTAAGCAACAAGAAGATAAA
GTTAAAATTAAATTTTATAAATAAAAAAGACAAAAATGGTGAATTTTGGA
GGGAATAAGGTGGGCCAAGTGGTGGCAGGAATTGGCGGGAACGGCGTAGG
CCAGGTACTGGCAGCCGTTGCCGTCTCTCTTTTGTTCCGCTTGTTTACTG
GACCTGGTCCGGCATTGGTAACAGATGACGACTCTGCCTATGGTGACGAC
GATGAAAGAAACGACGTCGCAGAAGCTAATGGTGACGGTGAAGCTCCGGT
TGACGGCAAAGTCTTCCCGGTCACCATCCGTTGACAAAACATCACTTGCT
CCCTGTCCGATAAATCCTCAAAATCAGTGCGGTTTCTTCTAAATAATGTG
AGTGGAGAGGCGAAACCTGGAAGATTATTGGCGATAATGGGACCGTCAGG
GTCAGGGAAAACAACGTTGCTGAATGTTCTGGCGGGTCAGTTAATGGCAT
CGCCACGATTACATTTATCCGGCCTATTGGAAGTCAATGGAAAACCTAGT
TCAAACAAAGCTTATAAGTTTGCCTATGTGAGACAGGAGGATCTTTTTTT
CTCTCAGTTGACAGTGCGGGAAACACTCTCTCTTGCAGCTGAACTTCAGC
TTCCAGAAATACTTTCTGTGG
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