FC876184

Overview
NameFC876184
Unique NameFC876184
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length671
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9382 contig Ccv1_Contig9382:1..671. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876184 vs. ExPASy Swiss-Prot
Match: ABCGJ_DICDI (ABC transporter G family member 19 OS=Dictyostelium discoideum GN=abcG19 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.928e-11
Identity = 48/112 (42.86%), Postives = 64/112 (57.14%), Query Frame = 2
Query:  335 QNITCSLSDKSSKSVRFLLNNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKF-AYVRQEDLFFSQLTVRETLSLAAEL-QLPEIL 664
            QNI  ++  K  K  R LL+NV G  KPG++ A+MG SG+GKTTLL+VLA +        + G   +NGKP      +   YV Q D+    LTVRE L  +A+L Q P +L
Sbjct:  821 QNINYTVPVKGGK--RLLLDNVEGWIKPGQMTALMGSSGAGKTTLLDVLAKRKTMG---EVQGKCFLNGKPLEIDFERITGYVEQMDVHNPGLTVREALRFSAKLRQEPSVL 927          
BLAST of FC876184 vs. ExPASy Swiss-Prot
Match: ABCG2_DICDI (ABC transporter G family member 2 OS=Dictyostelium discoideum GN=abcG2 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 5.928e-11
Identity = 41/100 (41.00%), Postives = 60/100 (60.00%), Query Frame = 2
Query:  362 KSSKSVRF-LLNNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKF-AYVRQEDLFFSQLTVRETLSLAAELQLP 655
            K  K+ R  LLN ++G  KPG LLA+MGPSG+GK+TLL+VLA +       H  G + +NG+  +    +  AYV Q D+     TV+E +  +A+ +LP
Sbjct:  728 KDGKNQRLRLLNEINGYVKPGMLLALMGPSGAGKSTLLDVLANRKTGG---HTKGQILINGQERTKYFTRLSAYVEQFDVLPPTQTVKEAILFSAKTRLP 824          
BLAST of FC876184 vs. ExPASy Swiss-Prot
Match: AB31G_ARATH (ABC transporter G family member 31 OS=Arabidopsis thaliana GN=ABCG31 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.928e-11
Identity = 38/93 (40.86%), Postives = 57/93 (61.29%), Query Frame = 2
Query:  386 LLNNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYK--FAYVRQEDLFFSQLTVRETLSLAAELQLPE 658
            LL+NVSG   PG L A++G SG+GKTTL++VLAG+       +  G + ++G P   + +     YV Q D+   Q+TV E+L  +A L+LP+
Sbjct:  853 LLSNVSGVFSPGVLTALVGSSGAGKTTLMDVLAGRKTGG---YTEGDIRISGHPKEQQTFARISGYVEQNDIHSPQVTVEESLWFSASLRLPK 942          
BLAST of FC876184 vs. ExPASy Swiss-Prot
Match: WHT1_CAEEL (ABC transporter ATP-binding protein/permease wht-1 OS=Caenorhabditis elegans GN=wht-1 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 7.743e-11
Identity = 37/96 (38.54%), Postives = 63/96 (65.62%), Query Frame = 2
Query:  371 KSVRFLLNNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYK--FAYVRQEDLFFSQLTVRETLSLAAELQL 652
            + V+ +L+NVSG A+ G+LLAI+G SG+GKTTL+NVL  + + +  L + G + ++G+ ++    +   A+V+Q D+F   +T RE L   A L++
Sbjct:    4 RRVKEILHNVSGMAESGKLLAILGSSGAGKTTLMNVLTSRNLTN--LDVQGSILIDGRRANKWKIREMSAFVQQHDMFVGTMTAREHLQFMARLRM 97          
BLAST of FC876184 vs. ExPASy Swiss-Prot
Match: PDR3_ORYSJ (Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. japonica GN=PDR3 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.743e-11
Identity = 38/93 (40.86%), Postives = 56/93 (60.22%), Query Frame = 2
Query:  386 LLNNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYK--FAYVRQEDLFFSQLTVRETLSLAAELQLPE 658
            LL  VSG  +PG L A+MG SG+GKTTL++VLAG+       ++ G + ++G P   + +     Y  Q D+   Q+TV E+L  +A L+LPE
Sbjct:  887 LLKGVSGSFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YIEGSINISGYPKKQETFARVSGYCEQNDIHSPQVTVYESLLFSAWLRLPE 976          
BLAST of FC876184 vs. ExPASy Swiss-Prot
Match: PDR3_ORYSI (Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. indica GN=PDR3 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.743e-11
Identity = 38/93 (40.86%), Postives = 56/93 (60.22%), Query Frame = 2
Query:  386 LLNNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYK--FAYVRQEDLFFSQLTVRETLSLAAELQLPE 658
            LL  VSG  +PG L A+MG SG+GKTTL++VLAG+       ++ G + ++G P   + +     Y  Q D+   Q+TV E+L  +A L+LPE
Sbjct:  887 LLKGVSGSFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG---YIEGSINISGYPKKQETFARVSGYCEQNDIHSPQVTVYESLLFSAWLRLPE 976          
BLAST of FC876184 vs. ExPASy Swiss-Prot
Match: BFR1_SCHPO (Brefeldin A resistance protein OS=Schizosaccharomyces pombe GN=bfr1 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.743e-11
Identity = 50/148 (33.78%), Postives = 76/148 (51.35%), Query Frame = 2
Query:  230 DSAYGDDDERNDVAEANGDGEAPVDGKVFPVT-----IR*QNITCSLSDKSSKSVRFLLNNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKP-SSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLP 655
            D   G D +  DV + + D E  ++ +   +         +N+   +  K     R LLN V G   PG+L A+MG SG+GKTTLLNVLA ++       ++G + VNG+   S    +  YV+Q+D+   + TVRE L  +A L+ P
Sbjct:  845 DLETGQDTQGGDVVKESPDNEEELNKEYEGIEKGHDIFSWRNLNYDIQIKGEH--RRLLNGVQGFVVPGKLTALMGESGAGKTTLLNVLAQRVDTGV---VTGDMLVNGRGLDSTFQRRTGYVQQQDVHIGESTVREALRFSAALRQP 987          
BLAST of FC876184 vs. ExPASy Swiss-Prot
Match: AB4G_ARATH (ABC transporter G family member 4 OS=Arabidopsis thaliana GN=ABCG4 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.743e-11
Identity = 40/95 (42.11%), Postives = 60/95 (63.16%), Query Frame = 2
Query:  383 FLLNNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYKFAYVRQEDLFFSQLTVRETLSLAAELQLPEILS 667
            F+L N++  + P ++LAI+GPSG+GK+TLL++LA +   +    L   + +N  PSS +    +YV Q D FF  LTV ET + +A L LP+ LS
Sbjct:   29 FILRNITLTSHPSQILAIIGPSGAGKSTLLDILAARTSPTSGSILLNSVLIN--PSSYRKIS-SYVPQHDTFFPLLTVSETFTFSASLLLPKNLS 120          
BLAST of FC876184 vs. ExPASy Swiss-Prot
Match: AB30G_ARATH (ABC transporter G family member 30 OS=Arabidopsis thaliana GN=ABCG30 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 7.743e-11
Identity = 42/115 (36.52%), Postives = 67/115 (58.26%), Query Frame = 2
Query:  317 PVTIR*QNITCSLSDKSSKSVRFLLNNVSGEAKPGRLLAIMGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGKPSSNKAYK--FAYVRQEDLFFSQLTVRETLSLAAELQLP 655
            P+T+  QN+   +     K+ R LL++++G  KPG L ++MG SG+GKTTLL+VL+G+     R  + G ++V G P   + +     Y  Q D+    +TV E+L  +A L+LP
Sbjct:  805 PLTVTFQNVQYYIETPQGKT-RQLLSDITGALKPGVLTSLMGVSGAGKTTLLDVLSGR---KTRGIIKGEIKVGGYPKVQETFARVSGYCEQFDIHSPNITVEESLKYSAWLRLP 915          
The following BLAST results are available for this feature:
BLAST of FC876184 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
ABCGJ_DICDI5.928e-1142.86ABC transporter G family member 19 OS=Dictyosteliu... [more]
ABCG2_DICDI5.928e-1141.00ABC transporter G family member 2 OS=Dictyostelium... [more]
AB31G_ARATH5.928e-1140.86ABC transporter G family member 31 OS=Arabidopsis ... [more]
WHT1_CAEEL7.743e-1138.54ABC transporter ATP-binding protein/permease wht-1... [more]
PDR3_ORYSJ7.743e-1140.86Pleiotropic drug resistance protein 3 OS=Oryza sat... [more]
PDR3_ORYSI7.743e-1140.86Pleiotropic drug resistance protein 3 OS=Oryza sat... [more]
BFR1_SCHPO7.743e-1133.78Brefeldin A resistance protein OS=Schizosaccharomy... [more]
AB4G_ARATH7.743e-1142.11ABC transporter G family member 4 OS=Arabidopsis t... [more]
AB30G_ARATH7.743e-1136.52ABC transporter G family member 30 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionC32001D01EF DevOvary1 Citrus clementina cDNA clone C32001D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876184 ID=FC876184; Name=FC876184; organism=Citrus clementina; type=EST; length=671bp
GCTACTCCAGTTGCACTGCTGCAACGGAGGCTAAGCAACAAGAAGATAAA
GTTAAAATTAAATTTTATAAATAAAAAAGACAAAAATGGTGAATTTTGGA
GGGAATAAGGTGGGCCAAGTGGTGGCAGGAATTGGCGGGAACGGCGTAGG
CCAGGTACTGGCAGCCGTTGCCGTCTCTCTTTTGTTCCGCTTGTTTACTG
GACCTGGTCCGGCATTGGTAACAGATGACGACTCTGCCTATGGTGACGAC
GATGAAAGAAACGACGTCGCAGAAGCTAATGGTGACGGTGAAGCTCCGGT
TGACGGCAAAGTCTTCCCGGTCACCATCCGTTGACAAAACATCACTTGCT
CCCTGTCCGATAAATCCTCAAAATCAGTGCGGTTTCTTCTAAATAATGTG
AGTGGAGAGGCGAAACCTGGAAGATTATTGGCGATAATGGGACCGTCAGG
GTCAGGGAAAACAACGTTGCTGAATGTTCTGGCGGGTCAGTTAATGGCAT
CGCCACGATTACATTTATCCGGCCTATTGGAAGTCAATGGAAAACCTAGT
TCAAACAAAGCTTATAAGTTTGCCTATGTGAGACAGGAGGATCTTTTTTT
CTCTCAGTTGACAGTGCGGGAAACACTCTCTCTTGCAGCTGAACTTCAGC
TTCCAGAAATACTTTCTGTGG
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