FC876185

Overview
NameFC876185
Unique NameFC876185
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length667
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876185 vs. ExPASy Swiss-Prot
Match: CYSN_BACTN (Sulfate adenylyltransferase subunit 1 OS=Bacteroides thetaiotaomicron GN=cysN PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.895e-34
Identity = 78/219 (35.62%), Postives = 124/219 (56.62%), Query Frame = 1
Query:    1 INIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRS--FKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSXNLDWYKGPTLLDALDNIN 651
            + ++  G VD GKST  G L++    + +  ++  E+++  +        YA +LD LKAERE+GITID+A   F T      + D PGH  + +NMITG S A+ A++++D+ TG          QTR H  L   LG+K ++   NKMD     +S+ R+DEIV E   +++ +G     V  +P+S  +GDN++++S    WYKG +LLD L+ ++
Sbjct:   20 LRLLTAGSVDDGKSTLIGRLLFDSKKLYEDQLDALERDSKRVGNAGEHIDYALLLDGLKAEREQGITIDVAYRYFSTNGRKFIIADTPGHEQYTRNMITGGSTANLAIILVDARTGVIT-------QTRRHTFLVSLLGIKHVVLAVNKMDLV--DFSEERFDEIVSEYKKFVEPLGI--PDVNCIPLSALDGDNVVDKSERTPWYKGISLLDFLETVH 227          
BLAST of FC876185 vs. ExPASy Swiss-Prot
Match: CYSN_SHEWM (Sulfate adenylyltransferase subunit 1 OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=cysN PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.181e-33
Identity = 80/219 (36.53%), Postives = 121/219 (55.25%), Query Frame = 1
Query:    1 INIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKR--SFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSXNLDWYKGPTLLDALDNIN 651
            + ++  G VD GKST  G L++    I +  +   EK++   N    SF  A ++D L++ERE+GITID+A   F T +    + D PGH  + +NM TG S  D A+++ID+  G          QTR H+ +   LG+K +I   NKMDA    Y +A Y +I KE   + + + ++   V FVPIS  +GDN++  S N+ WY G TLL  L+ ++
Sbjct:   25 LRVLTCGSVDDGKSTLIGRLLFDSKMIFEDQMAAIEKDSKRFNTTDDSFDLALLVDGLQSEREQGITIDVAYRYFTTEQRKFIIADTPGHEQYTRNMATGASTCDLAIILIDARHG-------VQVQTRRHSFICSQLGIKHVIIAINKMDAI--DYDQATYQKIKKEYREFAEDLSFS--DVRFVPISALKGDNVVNESPNMTWYPGSTLLKLLNTVS 232          
BLAST of FC876185 vs. ExPASy Swiss-Prot
Match: CYSN_CHRSD (Sulfate adenylyltransferase subunit 1 OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=cysN PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.216e-32
Identity = 82/225 (36.44%), Postives = 123/225 (54.67%), Query Frame = 1
Query:    1 INIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRS---------FKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSXNLDWYKGPTLLDALDNI 648
            +  +  G VD GKST  G L++     D ++I  +E + A + + S            A ++D L++ERE+GITID+A   F T K    + D PGH  + +NM TG S A  AV++ID+  G          QTR H+ +A  LG++ ++   NKMD     YS+AR+DEIV E   +  K+  N   + FVP+S  EGDN++ +S  + WY+GP LL  L+ +
Sbjct:   25 LRFITCGSVDDGKSTLIGRLLH-----DSKMI--YEDQLAAITQASRTSGTTGDQVDLALLVDGLQSEREQGITIDVAYRYFSTDKRKFIIADTPGHEQYTRNMATGASTASLAVILIDARHG-------VQTQTRRHSFIADLLGIQHLVIAVNKMDLV--DYSQARFDEIVAEYREFAAKL--NAPDIHFVPLSALEGDNVVNKSEAMSWYEGPALLHLLETV 231          
BLAST of FC876185 vs. ExPASy Swiss-Prot
Match: CYSN_BACFR (Sulfate adenylyltransferase subunit 1 OS=Bacteroides fragilis GN=cysN PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.216e-32
Identity = 75/219 (34.25%), Postives = 122/219 (55.71%), Query Frame = 1
Query:    1 INIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRS--FKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSXNLDWYKGPTLLDALDNIN 651
            + ++  G VD GKST  G L++    + +  ++  E+++  +        YA +LD LKAERE+GITID+A   F T      + D PGH  + +NMITG S A+ A++++D+  G          QTR H  L   LG+K ++   NKMD     +S+ R++EIV E   ++  +G     V  +P+S  +GDN++++S    WY+G +LLD L+ ++
Sbjct:   20 LRLLTAGSVDDGKSTLIGRLLFDSKKLYEDQLDALERDSKRLGNAGEHIDYALLLDGLKAEREQGITIDVAYRYFSTNNRKFIIADTPGHEQYTRNMITGGSTANLAIILVDARMGVIT-------QTRRHTFLVSLLGIKHVVLAVNKMDLV--DFSEERFNEIVAEYKKFVAPLGI--PDVTCIPLSALDGDNVVDKSERTPWYEGLSLLDFLETVH 227          
BLAST of FC876185 vs. ExPASy Swiss-Prot
Match: CYSN_BACFN (Sulfate adenylyltransferase subunit 1 OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=cysN PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.216e-32
Identity = 75/219 (34.25%), Postives = 122/219 (55.71%), Query Frame = 1
Query:    1 INIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRS--FKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSXNLDWYKGPTLLDALDNIN 651
            + ++  G VD GKST  G L++    + +  ++  E+++  +        YA +LD LKAERE+GITID+A   F T      + D PGH  + +NMITG S A+ A++++D+  G          QTR H  L   LG+K ++   NKMD     +S+ R++EIV E   ++  +G     V  +P+S  +GDN++++S    WY+G +LLD L+ ++
Sbjct:   20 LRLLTAGSVDDGKSTLIGRLLFDSKKLYEDQLDALERDSKRLGNAGEHIDYALLLDGLKAEREQGITIDVAYRYFSTNNRKFIIADTPGHEQYTRNMITGGSTANLAIILVDARMGVIT-------QTRRHTFLVSLLGIKHVVLAVNKMDLV--DFSEERFNEIVAEYKKFVAPLGI--PDVTCIPLSALDGDNVVDKSERTPWYEGLSLLDFLETVH 227          
BLAST of FC876185 vs. ExPASy Swiss-Prot
Match: CYSNC_RHOBA (Bifunctional enzyme cysN/cysC OS=Rhodopirellula baltica GN=cysNC PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.589e-32
Identity = 78/225 (34.67%), Postives = 122/225 (54.22%), Query Frame = 1
Query:    1 INIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWV---------LDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSXNLDWYKGPTLLDALDNI 648
            +  +  G VD GKST  G L+Y     D +++  +E E A++   S +   V         +D LK ERE+GITID+A   F T K    + D PGH  + +NM TG S AD A+++ID+  G          QTR H+ +   LG++ ++   NKMD     YS+ R++EI  +  S+  ++  +   + F+PIS   GDN+++RS N+ WY G TL++ L+ +
Sbjct:   25 LRFITCGSVDDGKSTLIGRLLY-----DSKLV--YEDELAKVQSDSVRQGSVAGGFDPSLFMDGLKEEREQGITIDVAYRYFSTAKRKFIIADTPGHEQYTRNMATGASSADLAIILIDARHGVLT-------QTRRHSFIVSLLGIRHVVVAVNKMDIDGVDYSEDRFNEICDDYRSFATRL--DLPDLHFIPISALNGDNLVDRSENMPWYTGSTLMNFLETV 233          
BLAST of FC876185 vs. ExPASy Swiss-Prot
Match: NODQ_RHISB (Bifunctional enzyme nodQ OS=Rhizobium sp. (strain BR816) GN=nodQ PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.075e-32
Identity = 80/225 (35.56%), Postives = 126/225 (56.00%), Query Frame = 1
Query:    1 INIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEM---------NKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSXNLDWYKGPTLLDALDNI 648
            +  +  G VD GKST  G L+     +D +++  FE +   +         N      A +LD L+AERE+GITID+A   F T+K    V D PGH ++ +NM+TG S AD AV++IDS  G  +       QTR H+ +A  LG++ ++   NK+D    ++ ++ +DEI ++  ++ KK+G+    +  +PI+   GDN+I  S N  WYKGP LL+ L+ +
Sbjct:   25 LRFITCGSVDDGKSTLIGRLL-----VDAKLV--FEDQLTNLGRVGSSGAVNGGEIDLALLLDGLEAEREQGITIDVAYRYFATSKRKFIVADTPGHEEYTRNMVTGASTADLAVILIDSRQGILQ-------QTRRHSYIASLLGIRHVVLAVNKIDLV--EFRQSVFDEIARDYKAFAKKLGF--ASIQPIPIAARFGDNVISASPNTPWYKGPALLEYLETV 231          
BLAST of FC876185 vs. ExPASy Swiss-Prot
Match: NODQ_RHIME (Bifunctional enzyme nodQ OS=Rhizobium meliloti GN=nodQ PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.075e-32
Identity = 80/225 (35.56%), Postives = 126/225 (56.00%), Query Frame = 1
Query:    1 INIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEM---------NKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSXNLDWYKGPTLLDALDNI 648
            +  +  G VD GKST  G L+Y     D +++  FE + A +         N +    A +LD L+AERE+GITID+A   F T+K    V D PGH ++ +NM+TG S AD A+++IDS  G  +       QTR H+ +A  LG++ ++   NK+D     + +  Y+EIV +  ++ K++G+    +  +PIS  +GDN+I  S N  WY+G  LL+ L+ +
Sbjct:   25 LRFITCGSVDDGKSTLIGRLLY-----DAKLV--FEDQLANLGRVGSPGAANGKEIDLALLLDGLEAEREQGITIDVAYRYFATSKRKFIVADTPGHEEYTRNMVTGASTADLAIILIDSRQGILQ-------QTRRHSYIASLLGIRHVVLAVNKIDLV--DFKQQVYEEIVADYMAFAKELGF--ASIRPIPISARDGDNVISASANTPWYRGAALLEYLETV 231          
BLAST of FC876185 vs. ExPASy Swiss-Prot
Match: CYSN_VIBC3 (Sulfate adenylyltransferase subunit 1 OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=cysN PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.622e-32
Identity = 77/219 (35.16%), Postives = 122/219 (55.71%), Query Frame = 1
Query:    1 INIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFK--YAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSXNLDWYKGPTLLDALDNIN 651
            +  +  G VD GKST  G L++    I +  +     ++  +     +   A ++D L+AERE+GITID+A   F T K    + D PGH  + +NM TG S  D AV++ID+  G  +       QTR H+ ++  LG+K  I   NKMD     YS+ R+++I  E   + K +    E +  +P+S  EGDN++E+S  +DWY+GP+LL+ L+N++
Sbjct:   27 LRFLTCGSVDDGKSTLIGRLLHDSKQIYEDQLAAVHNDSQRVGTTGSRPDLALLVDGLQAEREQGITIDVAYRYFSTQKRKFIIADTPGHEQYTRNMATGASTCDLAVILIDARKGVLD-------QTRRHSFISNLLGLKHFIVAVNKMDLV--DYSQDRFEQIRAEYLEFSKHLQGETE-IQIIPLSALEGDNVVEKSRLMDWYQGPSLLELLENVD 235          
BLAST of FC876185 vs. ExPASy Swiss-Prot
Match: CYSN_PHOLL (Sulfate adenylyltransferase subunit 1 OS=Photorhabdus luminescens subsp. laumondii GN=cysN PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.622e-32
Identity = 76/219 (34.70%), Postives = 125/219 (57.08%), Query Frame = 1
Query:    1 INIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKY--AWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSXNLDWYKGPTLLDALDNIN 651
            +  +  G VD GKST  G L++    I +  +   + ++  +  +  K   A ++D L AERE+GITID+A   F T K    + D PGH  + +NM TG S  D ++L+ID+  G  E       QTR H+ ++  LG++ ++   NKMD    +Y +  +++I ++  ++  ++  N + V FVPIS  +GDN++  S N+DWY+GPTLLD L+ ++
Sbjct:   33 LRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSTLQNDSKRIGTQGEKLDLALLVDGLAAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLSILLIDARKGVQE-------QTRRHSFISTLLGIRHLVVAVNKMDLM--EYRQEVFNQIKQDYMNFAGQLPTNLD-VHFVPISALDGDNIVTISRNMDWYEGPTLLDILETVD 241          
The following BLAST results are available for this feature:
BLAST of FC876185 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CYSN_BACTN2.895e-3435.62Sulfate adenylyltransferase subunit 1 OS=Bacteroid... [more]
CYSN_SHEWM4.181e-3336.53Sulfate adenylyltransferase subunit 1 OS=Shewanell... [more]
CYSN_CHRSD1.216e-3236.44Sulfate adenylyltransferase subunit 1 OS=Chromohal... [more]
CYSN_BACFR1.216e-3234.25Sulfate adenylyltransferase subunit 1 OS=Bacteroid... [more]
CYSN_BACFN1.216e-3234.25Sulfate adenylyltransferase subunit 1 OS=Bacteroid... [more]
CYSNC_RHOBA1.589e-3234.67Bifunctional enzyme cysN/cysC OS=Rhodopirellula ba... [more]
NODQ_RHISB2.075e-3235.56Bifunctional enzyme nodQ OS=Rhizobium sp. (strain ... [more]
NODQ_RHIME2.075e-3235.56Bifunctional enzyme nodQ OS=Rhizobium meliloti GN=... [more]
CYSN_VIBC34.622e-3235.16Sulfate adenylyltransferase subunit 1 OS=Vibrio ch... [more]
CYSN_PHOLL4.622e-3234.70Sulfate adenylyltransferase subunit 1 OS=Photorhab... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32001D02EF DevOvary1 Citrus clementina cDNA clone C32001D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876185 ID=FC876185; Name=FC876185; organism=Citrus clementina; type=EST; length=667bp
ATCAACATTGTGGTCATCGGCCATGTCGACTCTGGAAAGTCGACCACCAC
CGGACACTTGATCTACAAGCTTGGTGGTATTGACAAGCGTGTGATCGAGA
GGTTCGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAATACGCC
TGGGTGCTCGACAAGCTCAAGGCTGAGCGTGAACGTGGTATTACCATTGA
TATTGCCTTGTGGAAGTTCGAGACCACCAAGTACTACTGCACCGTCATTG
ATGCTCCCGGACATCGTGACTTTATCAAGAACATGATTACCGGTACCTCA
CAGGCTGACTGTGCCGTCCTCATCATTGACTCCACCACCGGCGGTTTTGA
AGCTGGTATCTCCAAGGATGGTCAGACTCGTGAGCATGCTTTGCTTGCTT
TCACCCTTGGTGTGAAGCAGATGATTTGCTGCTGTAACAAGATGGACGCC
ACCACCCCCAAGTATTCAAAGGCTAGGTACGATGAAATTGTGAAGGAGGT
CTCTTCCTACCTGAAGAAGGTTGGATACAACCCCGAGAAAGTCCCATTCG
TGCCCATCTCTGGTTTCGAGGGTGACAACATGATTGAGAGGTCTANCAAC
CTTGACTGGTACAAGGGTCCCACCCTGCTGGACGCTCTTGACAATATCAA
TGAGCCCGAGAGGCCCT
back to top