FC876185

Overview
NameFC876185
Unique NameFC876185
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length667
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876185 vs. ExPASy Swiss-Prot
Match: EFTU_LACRJ (Elongation factor Tu OS=Lactobacillus reuteri (strain JCM 1112) GN=tuf PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.822e-20
Identity = 78/226 (34.51%), Postives = 111/226 (49.12%), Query Frame = 1
Query:    1 INIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSXNLDWYKGPTLLDALDN-INEPERP 666
            +NI  IGHVD GK+T T  +   L              AA+   ++  YA + D    E+ERGITI+ A  ++ET K +   IDAPGH D++KNMITG +Q D A+L++ +T G          QTREH LLA  +GV+ ++   NK D           D +  EV   L +  +  + VP V    +   EGD   E+           L+D +D+ I  P+RP
Sbjct:   14 VNIGTIGHVDHGKTTLTAAITKVL--------------AAKGLAKAEDYADI-DAAPEEKERGITINTAHVEYETEKRHYAHIDAPGHADYVKNMITGAAQMDGAILVVAATDGPMP-------QTREHILLARQVGVQYIVVFLNKTDLVD---DDELVDLVEMEVRDLLSEYDFPGDDVPVVRGSALKALEGDPEQEKVI-------LHLMDVIDDYIPTPKRP 207          
BLAST of FC876185 vs. ExPASy Swiss-Prot
Match: EFTU_LACRD (Elongation factor Tu OS=Lactobacillus reuteri (strain DSM 20016) GN=tuf PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.822e-20
Identity = 78/226 (34.51%), Postives = 111/226 (49.12%), Query Frame = 1
Query:    1 INIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSXNLDWYKGPTLLDALDN-INEPERP 666
            +NI  IGHVD GK+T T  +   L              AA+   ++  YA + D    E+ERGITI+ A  ++ET K +   IDAPGH D++KNMITG +Q D A+L++ +T G          QTREH LLA  +GV+ ++   NK D           D +  EV   L +  +  + VP V    +   EGD   E+           L+D +D+ I  P+RP
Sbjct:   14 VNIGTIGHVDHGKTTLTAAITKVL--------------AAKGLAKAEDYADI-DAAPEEKERGITINTAHVEYETEKRHYAHIDAPGHADYVKNMITGAAQMDGAILVVAATDGPMP-------QTREHILLARQVGVQYIVVFLNKTDLVD---DDELVDLVEMEVRDLLSEYDFPGDDVPVVRGSALKALEGDPEQEKVI-------LHLMDVIDDYIPTPKRP 207          
BLAST of FC876185 vs. ExPASy Swiss-Prot
Match: EFTU_CLONN (Elongation factor Tu OS=Clostridium novyi (strain NT) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.822e-20
Identity = 64/197 (32.49%), Postives = 96/197 (48.73%), Query Frame = 1
Query:    1 INIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGF----EGDN 579
            +NI  IGHVD GK+TTT  +   L       ++ +E                +DK   E+ERGITI+ +  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK D           + +  EV   L + G++ ++ P V  S      EGD+
Sbjct:   13 VNIGTIGHVDHGKTTTTAAITMTLAKAGGAEVQNYED---------------IDKAPEEKERGITINTSHVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLASRVGVNHIVVFLNKADQVD---DPELLELVEMEVRELLSEYGFDGDECPVVVGSALKAIEEGDD 184          
BLAST of FC876185 vs. ExPASy Swiss-Prot
Match: EFTU2_STRAW (Elongation factor Tu 2 OS=Streptomyces avermitilis GN=tuf2 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.822e-20
Identity = 75/225 (33.33%), Postives = 107/225 (47.56%), Query Frame = 1
Query:    1 INIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISG---FEGDNMIERSXNLDWYKGPTLLDALDN-INEPER 663
            +NI  +GHVD GK+T T  +                K  AE    +F     +D+   E  RGITI+IA  ++ET   +   +D PGH D++KNM+TG +Q D A+L++ +  G          QT EH LLA  +GV  ++   NK DA   + +    D +  EV   L   GY  + VP V +SG    EGD     + +        LLDA+D  +  PER
Sbjct:   13 LNIGTMGHVDHGKTTLTAAIT---------------KVLAERGSGTFVPFDRIDRAPEEAARGITINIAHVEYETDTRHYAHVDMPGHADYVKNMVTGAAQLDGAILVVSALDGIMP-------QTAEHVLLARQVGVDHIVVALNKADAGDEELT----DLVELEVRELLTAHGYGGDSVPVVRVSGLKALEGDPRWTAAID-------ALLDAVDTYVPMPER 204          
BLAST of FC876185 vs. ExPASy Swiss-Prot
Match: EFTU1_THETH (Elongation factor Tu-A OS=Thermus thermophilus GN=tufA PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 1.822e-20
Identity = 74/220 (33.64%), Postives = 104/220 (47.27%), Query Frame = 1
Query:    1 INIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSXNL-----DWY-KGPTLLDALD 642
            +N+  IGHVD GK+T T  L Y                AAE      K    +DK   ER RGITI+ A  ++ET K + + +D PGH D+IKNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK+D           D +  EV   L +  +  ++VP +  S       + R+        +W  K   LLDA+D
Sbjct:   13 VNVGTIGHVDHGKTTLTAALTYVA--------------AAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPYIVVFMNKVDMVD---DPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAID 208          
BLAST of FC876185 vs. ExPASy Swiss-Prot
Match: EFTU1_THET8 (Elongation factor Tu-A OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=tufA PE=1 SV=3)

HSP 1 Score: 99.3673 bits (246), Expect = 1.822e-20
Identity = 74/220 (33.64%), Postives = 104/220 (47.27%), Query Frame = 1
Query:    1 INIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSXNL-----DWY-KGPTLLDALD 642
            +N+  IGHVD GK+T T  L Y                AAE      K    +DK   ER RGITI+ A  ++ET K + + +D PGH D+IKNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK+D           D +  EV   L +  +  ++VP +  S       + R+        +W  K   LLDA+D
Sbjct:   13 VNVGTIGHVDHGKTTLTAALTYVA--------------AAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPYIVVFMNKVDMVD---DPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAID 208          
BLAST of FC876185 vs. ExPASy Swiss-Prot
Match: EFTU_THEEB (Elongation factor Tu OS=Thermosynechococcus elongatus (strain BP-1) GN=tuf PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.379e-20
Identity = 71/228 (31.14%), Postives = 112/228 (49.12%), Query Frame = 1
Query:    1 INIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEG-DNMIERSXNL----DWY-KGPTLLDALDN-INEPER 663
            +N+  IGHVD GK+T T  +   L    K    ++++               +D    E+ RGITI+ A  ++ET K +   +D PGH D++KNMITG +Q D A+L++ +T G          QT+EH LLA  +GV  ++   NK+D       +   + +  E+   L +  +  ++VP +  SG +  + M      L    +W  K   L+DA+DN I  PER
Sbjct:   13 VNVGTIGHVDHGKTTLTAAITMTLAAQGKAQARKYDE---------------IDAAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGAMP-------QTKEHILLARQVGVPSIVVFLNKVDMVD---DEELLELVELELRELLNEYEFPGDEVPIIRGSGLKALEAMTANPKTLRGENEWVDKIYELMDAVDNYIPTPER 215          
BLAST of FC876185 vs. ExPASy Swiss-Prot
Match: EFTU_SULNB (Elongation factor Tu OS=Sulfurovum sp. (strain NBC37-1) GN=tuf PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.379e-20
Identity = 71/223 (31.84%), Postives = 105/223 (47.09%), Query Frame = 1
Query:    1 INIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSXNLDW-YKGPTLLDALDN-INEPER 663
            INI  IGHVD GK+T T  +   L       +  ++                +D    ERERGITI  +  ++ET   +   +D PGH D++KNMITG +Q D A+L+I +T G          QTREH LL+  +GV  ++   NK D    +  +   + +  EV   L +  +  +  P V  S F+     +     +W  K   L+DA+D  I EP+R
Sbjct:   13 INIGTIGHVDHGKTTLTAAITAVLAVAGDTELMDYD---------------AIDNAPEERERGITIATSHVEYETATRHYAHVDCPGHADYVKNMITGAAQMDGAILVIAATDGPM-------AQTREHILLSKQVGVPYIVVFLNKEDQLDDEDKEEMLELVEMEVRELLSEYDFPGDDTPIVAGSAFQALEEAKTGTLGEWSAKIMELMDAVDEYIPEPKR 213          
BLAST of FC876185 vs. ExPASy Swiss-Prot
Match: EFTU_RICBR (Elongation factor Tu OS=Rickettsia bellii (strain RML369-C) GN=tuf PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.379e-20
Identity = 70/231 (30.30%), Postives = 114/231 (49.35%), Query Frame = 1
Query:    1 INIVVIGHVDSGKSTTTGHLIYKLGGIDKRV-IERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSXNLDWYKGPTLLDALDN-----INEPERP 666
            +NI  IGHVD GK++ T  +   LG  +K + ++++++               +D    E+ERGITI  A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV +M+   NK+D           + +  EV   L K  +  +++P +    +   EG    E++ +        L+DA+D+     I E E+P
Sbjct:   13 VNIGTIGHVDHGKTSLTAAITMVLGKDNKDIKVKKYDE---------------IDAAPEEKERGITISTAHVEYETKSRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLAKQVGVPKMVVFLNKVDMVD---DPDLLELVEMEVRELLSKYDFPGDEIPIIRGSALQALEGKPEGEKAIH-------ELMDAVDSYIPQPIRETEKP 211          
BLAST of FC876185 vs. ExPASy Swiss-Prot
Match: EFTU_RICB8 (Elongation factor Tu OS=Rickettsia bellii (strain OSU 85-389) GN=tuf PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.379e-20
Identity = 70/231 (30.30%), Postives = 114/231 (49.35%), Query Frame = 1
Query:    1 INIVVIGHVDSGKSTTTGHLIYKLGGIDKRV-IERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSXNLDWYKGPTLLDALDN-----INEPERP 666
            +NI  IGHVD GK++ T  +   LG  +K + ++++++               +D    E+ERGITI  A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV +M+   NK+D           + +  EV   L K  +  +++P +    +   EG    E++ +        L+DA+D+     I E E+P
Sbjct:   13 VNIGTIGHVDHGKTSLTAAITMVLGKDNKDIKVKKYDE---------------IDAAPEEKERGITISTAHVEYETKSRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLAKQVGVPKMVVFLNKVDMVD---DPDLLELVEMEVRELLSKYDFPGDEIPIIRGSALQALEGKPEGEKAIH-------ELMDAVDSYIPQPIRETEKP 211          
The following BLAST results are available for this feature:
BLAST of FC876185 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_LACRJ1.822e-2034.51Elongation factor Tu OS=Lactobacillus reuteri (str... [more]
EFTU_LACRD1.822e-2034.51Elongation factor Tu OS=Lactobacillus reuteri (str... [more]
EFTU_CLONN1.822e-2032.49Elongation factor Tu OS=Clostridium novyi (strain ... [more]
EFTU2_STRAW1.822e-2033.33Elongation factor Tu 2 OS=Streptomyces avermitilis... [more]
EFTU1_THETH1.822e-2033.64Elongation factor Tu-A OS=Thermus thermophilus GN=... [more]
EFTU1_THET81.822e-2033.64Elongation factor Tu-A OS=Thermus thermophilus (st... [more]
EFTU_THEEB2.379e-2031.14Elongation factor Tu OS=Thermosynechococcus elonga... [more]
EFTU_SULNB2.379e-2031.84Elongation factor Tu OS=Sulfurovum sp. (strain NBC... [more]
EFTU_RICBR2.379e-2030.30Elongation factor Tu OS=Rickettsia bellii (strain ... [more]
EFTU_RICB82.379e-2030.30Elongation factor Tu OS=Rickettsia bellii (strain ... [more]

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Properties
Property NameValue
Genbank descriptionC32001D02EF DevOvary1 Citrus clementina cDNA clone C32001D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876185 ID=FC876185; Name=FC876185; organism=Citrus clementina; type=EST; length=667bp
ATCAACATTGTGGTCATCGGCCATGTCGACTCTGGAAAGTCGACCACCAC
CGGACACTTGATCTACAAGCTTGGTGGTATTGACAAGCGTGTGATCGAGA
GGTTCGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAATACGCC
TGGGTGCTCGACAAGCTCAAGGCTGAGCGTGAACGTGGTATTACCATTGA
TATTGCCTTGTGGAAGTTCGAGACCACCAAGTACTACTGCACCGTCATTG
ATGCTCCCGGACATCGTGACTTTATCAAGAACATGATTACCGGTACCTCA
CAGGCTGACTGTGCCGTCCTCATCATTGACTCCACCACCGGCGGTTTTGA
AGCTGGTATCTCCAAGGATGGTCAGACTCGTGAGCATGCTTTGCTTGCTT
TCACCCTTGGTGTGAAGCAGATGATTTGCTGCTGTAACAAGATGGACGCC
ACCACCCCCAAGTATTCAAAGGCTAGGTACGATGAAATTGTGAAGGAGGT
CTCTTCCTACCTGAAGAAGGTTGGATACAACCCCGAGAAAGTCCCATTCG
TGCCCATCTCTGGTTTCGAGGGTGACAACATGATTGAGAGGTCTANCAAC
CTTGACTGGTACAAGGGTCCCACCCTGCTGGACGCTCTTGACAATATCAA
TGAGCCCGAGAGGCCCT
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