FC876185

Overview
NameFC876185
Unique NameFC876185
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length667
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876185 vs. ExPASy Swiss-Prot
Match: EFTU_STRU0 (Elongation factor Tu OS=Streptococcus uberis (strain ATCC BAA-854 / 0140J) GN=tuf PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.923e-20
Identity = 69/199 (34.67%), Postives = 100/199 (50.25%), Query Frame = 1
Query:    1 INIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIE 588
            +NI  IGHVD GK+T T  +          V+ R    +    K    YA + D    ERERGITI+ A  ++ET   +   IDAPGH D++KNMITG +Q D A+L++ ST G          QTREH LL+  +GVK +I   NK+D       +   + +  E+   L +  +  + +P +    +   EGD+  E
Sbjct:   13 VNIGTIGHVDHGKTTLTAAIT--------TVLARRLPTSVNQPK---DYASI-DAAPEERERGITINTAHVEYETETRHYAHIDAPGHADYVKNMITGAAQMDGAILVVASTDGPMP-------QTREHILLSRQVGVKHLIVFMNKIDLVD---DEELLELVEMEIRDLLSEYDFPGDDLPVIQGSALKALEGDSKYE 189          
BLAST of FC876185 vs. ExPASy Swiss-Prot
Match: EFTU_STRPZ (Elongation factor Tu OS=Streptococcus pyogenes serotype M49 (strain NZ131) GN=tuf PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.923e-20
Identity = 69/199 (34.67%), Postives = 100/199 (50.25%), Query Frame = 1
Query:    1 INIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIE 588
            +NI  IGHVD GK+T T  +          V+ R    +    K    YA + D    ERERGITI+ A  ++ET   +   IDAPGH D++KNMITG +Q D A+L++ ST G          QTREH LL+  +GVK +I   NK+D       +   + +  E+   L +  +  + +P +    +   EGD+  E
Sbjct:   13 VNIGTIGHVDHGKTTLTAAIT--------TVLARRLPTSVNQPK---DYASI-DAAPEERERGITINTAHVEYETETRHYAHIDAPGHADYVKNMITGAAQMDGAILVVASTDGPMP-------QTREHILLSRQVGVKHLIVFMNKVDLVD---DEELLELVEMEIRDLLSEYDFPGDDLPVIQGSALKALEGDSKYE 189          
BLAST of FC876185 vs. ExPASy Swiss-Prot
Match: EFTU_STRP8 (Elongation factor Tu OS=Streptococcus pyogenes serotype M18 GN=tuf PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.923e-20
Identity = 69/199 (34.67%), Postives = 100/199 (50.25%), Query Frame = 1
Query:    1 INIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIE 588
            +NI  IGHVD GK+T T  +          V+ R    +    K    YA + D    ERERGITI+ A  ++ET   +   IDAPGH D++KNMITG +Q D A+L++ ST G          QTREH LL+  +GVK +I   NK+D       +   + +  E+   L +  +  + +P +    +   EGD+  E
Sbjct:   13 VNIGTIGHVDHGKTTLTAAIT--------TVLARRLPTSVNQPK---DYASI-DAAPEERERGITINTAHVEYETETRHYAHIDAPGHADYVKNMITGAAQMDGAILVVASTDGPMP-------QTREHILLSRQVGVKHLIVFMNKVDLVD---DEELLELVEMEIRDLLSEYDFPGDDLPVIQGSALKALEGDSKYE 189          
BLAST of FC876185 vs. ExPASy Swiss-Prot
Match: EFTU_RICSI (Elongation factor Tu OS=Rickettsia sibirica GN=tuf PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.923e-20
Identity = 71/228 (31.14%), Postives = 108/228 (47.37%), Query Frame = 1
Query:    1 INIVVIGHVDSGKSTTTGHL---IYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSXNLDWYKGPTLLDALDN-INEPER 663
            +NI  IGHVD GK++ T  +   + K GG      ++                  +D    E+ERGITI  A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  M+   NK+D           + +  EV   L K G+  +++P +    +   EG    E++ N        L+DA+D+ I +P R
Sbjct:   13 VNIGTIGHVDHGKTSLTAAITIVLAKTGGAQATAYDQ------------------IDAAPEEKERGITISTAHVEYETKNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLAKQVGVPAMVVFLNKIDMVD---DPDLLELVEMEVRELLSKYGFPGDEIPIIKGSALQALEGKPEGEKAIN-------ELMDAVDSYIPQPVR 205          
BLAST of FC876185 vs. ExPASy Swiss-Prot
Match: EFTU_RICRS (Elongation factor Tu OS=Rickettsia rickettsii (strain Sheila Smith) GN=tuf PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.923e-20
Identity = 71/228 (31.14%), Postives = 108/228 (47.37%), Query Frame = 1
Query:    1 INIVVIGHVDSGKSTTTGHL---IYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSXNLDWYKGPTLLDALDN-INEPER 663
            +NI  IGHVD GK++ T  +   + K GG      ++                  +D    E+ERGITI  A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  M+   NK+D           + +  EV   L K G+  +++P +    +   EG    E++ N        L+DA+D+ I +P R
Sbjct:   13 VNIGTIGHVDHGKTSLTAAITIVLAKTGGAQATAYDQ------------------IDAAPEEKERGITISTAHVEYETKNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLAKQVGVPAMVVFLNKIDMVD---DPDLLELVEMEVRELLSKYGFPGDEIPIIKGSALQALEGKPEGEKAIN-------ELMDAVDSYIPQPVR 205          
BLAST of FC876185 vs. ExPASy Swiss-Prot
Match: EFTU_RICRO (Elongation factor Tu OS=Rickettsia rickettsii (strain Iowa) GN=tuf PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.923e-20
Identity = 71/228 (31.14%), Postives = 108/228 (47.37%), Query Frame = 1
Query:    1 INIVVIGHVDSGKSTTTGHL---IYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSXNLDWYKGPTLLDALDN-INEPER 663
            +NI  IGHVD GK++ T  +   + K GG      ++                  +D    E+ERGITI  A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  M+   NK+D           + +  EV   L K G+  +++P +    +   EG    E++ N        L+DA+D+ I +P R
Sbjct:   13 VNIGTIGHVDHGKTSLTAAITIVLAKTGGAQATAYDQ------------------IDAAPEEKERGITISTAHVEYETKNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLAKQVGVPAMVVFLNKIDMVD---DPDLLELVEMEVRELLSKYGFPGDEIPIIKGSALQALEGKPEGEKAIN-------ELMDAVDSYIPQPVR 205          
BLAST of FC876185 vs. ExPASy Swiss-Prot
Match: EFTU_RICRI (Elongation factor Tu OS=Rickettsia rickettsii GN=tuf PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.923e-20
Identity = 71/228 (31.14%), Postives = 108/228 (47.37%), Query Frame = 1
Query:    1 INIVVIGHVDSGKSTTTGHL---IYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSXNLDWYKGPTLLDALDN-INEPER 663
            +NI  IGHVD GK++ T  +   + K GG      ++                  +D    E+ERGITI  A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  M+   NK+D           + +  EV   L K G+  +++P +    +   EG    E++ N        L+DA+D+ I +P R
Sbjct:   13 VNIGTIGHVDHGKTSLTAAITIVLAKTGGAQATAYDQ------------------IDAAPEEKERGITISTAHVEYETKNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLAKQVGVPAMVVFLNKIDMVD---DPDLLELVEMEVRELLSKYGFPGDEIPIIKGSALQALEGKPEGEKAIN-------ELMDAVDSYIPQPVR 205          
BLAST of FC876185 vs. ExPASy Swiss-Prot
Match: EFTU_RICPU (Elongation factor Tu OS=Rickettsia peacockii (strain Rustic) GN=tuf PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.923e-20
Identity = 71/228 (31.14%), Postives = 108/228 (47.37%), Query Frame = 1
Query:    1 INIVVIGHVDSGKSTTTGHL---IYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSXNLDWYKGPTLLDALDN-INEPER 663
            +NI  IGHVD GK++ T  +   + K GG      ++                  +D    E+ERGITI  A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  M+   NK+D           + +  EV   L K G+  +++P +    +   EG    E++ N        L+DA+D+ I +P R
Sbjct:   13 VNIGTIGHVDHGKTSLTAAITIVLAKTGGAQATAYDQ------------------IDAAPEEKERGITISTAHVEYETKNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLAKQVGVPAMVVFLNKIDMVD---DPDLLELVEMEVRELLSKYGFPGDEIPIIKGSALQALEGKPEGEKAIN-------ELMDAVDSYIPQPVR 205          
BLAST of FC876185 vs. ExPASy Swiss-Prot
Match: EFTU_RICCN (Elongation factor Tu OS=Rickettsia conorii GN=tuf PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.923e-20
Identity = 71/228 (31.14%), Postives = 108/228 (47.37%), Query Frame = 1
Query:    1 INIVVIGHVDSGKSTTTGHL---IYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSXNLDWYKGPTLLDALDN-INEPER 663
            +NI  IGHVD GK++ T  +   + K GG      ++                  +D    E+ERGITI  A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  M+   NK+D           + +  EV   L K G+  +++P +    +   EG    E++ N        L+DA+D+ I +P R
Sbjct:   13 VNIGTIGHVDHGKTSLTAAITIVLAKTGGAQATAYDQ------------------IDAAPEEKERGITISTAHVEYETQNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLAKQVGVPAMVVFLNKIDMVD---DPDLLELVEMEVRELLSKYGFPGDEIPIIKGSALQALEGKPEGEKAIN-------ELMDAVDSYIPQPVR 205          
BLAST of FC876185 vs. ExPASy Swiss-Prot
Match: EFTU_RICCK (Elongation factor Tu OS=Rickettsia canadensis (strain McKiel) GN=tuf PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.923e-20
Identity = 71/228 (31.14%), Postives = 108/228 (47.37%), Query Frame = 1
Query:    1 INIVVIGHVDSGKSTTTGHL---IYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSXNLDWYKGPTLLDALDN-INEPER 663
            +NI  IGHVD GK++ T  +   + K GG      ++                  +D    E+ERGITI  A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  M+   NK+D           + +  EV   L K G+  +++P +    +   EG    E++ N        L+DA+D+ I +P R
Sbjct:   13 VNIGTIGHVDHGKTSLTAAITIVLAKTGGAQATAYDQ------------------IDAAPEEKERGITISTAHVEYETKNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLAKQVGVPAMVVFLNKVDMVD---DPDLLELVEMEVRELLSKYGFPGDEIPIIKGSALQALEGKPEGEKAIN-------ELMDAVDSYIPQPVR 205          
The following BLAST results are available for this feature:
BLAST of FC876185 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_STRU06.923e-2034.67Elongation factor Tu OS=Streptococcus uberis (stra... [more]
EFTU_STRPZ6.923e-2034.67Elongation factor Tu OS=Streptococcus pyogenes ser... [more]
EFTU_STRP86.923e-2034.67Elongation factor Tu OS=Streptococcus pyogenes ser... [more]
EFTU_RICSI6.923e-2031.14Elongation factor Tu OS=Rickettsia sibirica GN=tuf... [more]
EFTU_RICRS6.923e-2031.14Elongation factor Tu OS=Rickettsia rickettsii (str... [more]
EFTU_RICRO6.923e-2031.14Elongation factor Tu OS=Rickettsia rickettsii (str... [more]
EFTU_RICRI6.923e-2031.14Elongation factor Tu OS=Rickettsia rickettsii GN=t... [more]
EFTU_RICPU6.923e-2031.14Elongation factor Tu OS=Rickettsia peacockii (stra... [more]
EFTU_RICCN6.923e-2031.14Elongation factor Tu OS=Rickettsia conorii GN=tuf ... [more]
EFTU_RICCK6.923e-2031.14Elongation factor Tu OS=Rickettsia canadensis (str... [more]

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Properties
Property NameValue
Genbank descriptionC32001D02EF DevOvary1 Citrus clementina cDNA clone C32001D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876185 ID=FC876185; Name=FC876185; organism=Citrus clementina; type=EST; length=667bp
ATCAACATTGTGGTCATCGGCCATGTCGACTCTGGAAAGTCGACCACCAC
CGGACACTTGATCTACAAGCTTGGTGGTATTGACAAGCGTGTGATCGAGA
GGTTCGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAATACGCC
TGGGTGCTCGACAAGCTCAAGGCTGAGCGTGAACGTGGTATTACCATTGA
TATTGCCTTGTGGAAGTTCGAGACCACCAAGTACTACTGCACCGTCATTG
ATGCTCCCGGACATCGTGACTTTATCAAGAACATGATTACCGGTACCTCA
CAGGCTGACTGTGCCGTCCTCATCATTGACTCCACCACCGGCGGTTTTGA
AGCTGGTATCTCCAAGGATGGTCAGACTCGTGAGCATGCTTTGCTTGCTT
TCACCCTTGGTGTGAAGCAGATGATTTGCTGCTGTAACAAGATGGACGCC
ACCACCCCCAAGTATTCAAAGGCTAGGTACGATGAAATTGTGAAGGAGGT
CTCTTCCTACCTGAAGAAGGTTGGATACAACCCCGAGAAAGTCCCATTCG
TGCCCATCTCTGGTTTCGAGGGTGACAACATGATTGAGAGGTCTANCAAC
CTTGACTGGTACAAGGGTCCCACCCTGCTGGACGCTCTTGACAATATCAA
TGAGCCCGAGAGGCCCT
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