FC876185

Overview
NameFC876185
Unique NameFC876185
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length667
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig789 contig Ccv1_Contig789:234..900. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876185 vs. ExPASy Swiss-Prot
Match: EFTU_GLOVI (Elongation factor Tu OS=Gloeobacter violaceus GN=tufA PE=3 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 6.923e-20
Identity = 73/229 (31.88%), Postives = 110/229 (48.03%), Query Frame = 1
Query:    1 INIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSXNL-----DWYKG-PTLLDALD-NINEPER 663
            +NI  IGHVD GK+T T  +   L  + +   +++++               +D+   E+ RGITI+ A  ++ET K +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK D    +       E+V+ EV   L K  +  + VP V  S       +     L     DW     +L+DA+D  I  PER
Sbjct:   13 VNIGTIGHVDHGKTTLTAAITMTLAALGRAKAKKYDE---------------IDQAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPNIVVFLNKKD----QLDDPELLELVELEVRELLSKYDFPGDDVPIVAGSALMALEKMASEPKLIRGKDDWVDCIYSLMDAVDAYIPTPER 215          
BLAST of FC876185 vs. ExPASy Swiss-Prot
Match: EFTU_CYAP8 (Elongation factor Tu OS=Cyanothece sp. (strain PCC 8801) GN=tuf PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.923e-20
Identity = 69/228 (30.26%), Postives = 106/228 (46.49%), Query Frame = 1
Query:    1 INIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSXNL-----DWY-KGPTLLDALD-NINEPER 663
            +NI  IGHVD GK+T T  +   L    K     +E                +D    E+ RGITI+ A  ++ET   +   +D PGH D++KNMITG +Q D  +L++ +  G          QTREH LLA  +GV  ++   NK D       +   + +  EV   L + G++ + +P V  S  +    ++ +  +     +W  K   L+D +D  I EPER
Sbjct:   13 VNIGTIGHVDHGKTTLTAAITMTLAAQGKAKARNYED---------------IDAAPEEKARGITINTAHVEYETDSRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAADGPMP-------QTREHILLAKQVGVPNLVVFLNKQDMVD---DEELLELVELEVRELLTEYGFDGDNIPIVAGSALQAVEALKANPKIAKGDNEWTDKILALMDEVDAYIPEPER 215          
BLAST of FC876185 vs. ExPASy Swiss-Prot
Match: EFTU_BORGA (Elongation factor Tu OS=Borrelia garinii GN=tuf PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.923e-20
Identity = 69/222 (31.08%), Postives = 113/222 (50.90%), Query Frame = 1
Query:    1 INIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSXNLDWYKGPTLLDALDN-INEPER 663
            +N+  IGHVD GK+T T  +      ++K             + ++ KY  + D    E+ RGITI+    ++ET   +   +D PGH D+IKNMITG +Q D A+L++ + +G        + QT+EH LLA  +G+K++I   NK+D   P+      + +  EV   ++K G++    P +  S F   +  E   +    K   LL+++DN  + PER
Sbjct:   13 MNVGTIGHVDHGKTTLTAAISIYCSKLNK-------------DAKALKYEDI-DNAPEEKARGITINARHIEYETANRHYAHVDCPGHADYIKNMITGAAQMDAAILLVAADSGA-------EPQTKEHLLLAQRMGIKKIIVFLNKLDLADPEL----VELVEVEVLELVEKYGFS-ANTPIIKGSAFGAMSNPEDPESTKCVK--ELLESMDNYFDLPER 206          
BLAST of FC876185 vs. ExPASy Swiss-Prot
Match: EFTU_ANADE (Elongation factor Tu OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.923e-20
Identity = 65/195 (33.33%), Postives = 93/195 (47.69%), Query Frame = 1
Query:    1 INIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGD 576
            +N+  IGHVD GK+T T  +                K  A+     F     +DK   ERERGITI  A  +++T K +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK+D       K   D +  EV   L +  +   ++P V    +   EGD
Sbjct:   13 VNVGTIGHVDHGKTTLTAAIT---------------KVLAQKGGAQFLAYDQIDKAPEERERGITIATAHVEYQTEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPYIVVFLNKVDMVD---DKELLDLVELEVRELLSEYDFPGNEIPIVKGSALKALEGD 182          
BLAST of FC876185 vs. ExPASy Swiss-Prot
Match: EFTU_THENN (Elongation factor Tu OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=tuf PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.042e-20
Identity = 72/222 (32.43%), Postives = 105/222 (47.30%), Query Frame = 1
Query:    1 INIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSXNLDWYKGPTLLDALDN-INEPER 663
            +N+  IGH+D GKST T  +   L          +++               +DK   E+ RGITI+I   ++ET K +   ID PGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  + V  MI   NK D           + +  EV   L +  Y  ++VP +  S  +     +   +  +     LLDA+DN I +P+R
Sbjct:   13 VNVGTIGHIDHGKSTLTAAITKYLSLKGLAQYVPYDQ---------------IDKAPEEKARGITINITHVEYETEKRHYAHIDCPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVEVPYMIVFINKTDMVD---DPELIELVEMEVRDLLSQYEYPGDEVPVIKGSALKALEAPDDPNHEAYKPIQELLDAMDNYIPDPQR 209          
BLAST of FC876185 vs. ExPASy Swiss-Prot
Match: EFTU_SPHWW (Elongation factor Tu OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=tuf PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.042e-20
Identity = 76/227 (33.48%), Postives = 111/227 (48.90%), Query Frame = 1
Query:    4 NIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPEKVPFV---PISGFEGDN-MIERSXNLDWYKGPTLLDALDN-INEPERP 666
            NI  IGHVD GK++ T  +                K  AE    +F     +DK   ERERGITI  A  ++ET + +   +D PGH D++KNMITG +Q D  +L++ +T G          QTREH LLA  +GV  ++   NK+D        A   E+V+ EV   L    +  + +P +    +   +G N  I R+  L+      L+ A+D+ I +PERP
Sbjct:   14 NIGTIGHVDHGKTSLTAAIT---------------KVLAETGGATFVDYANIDKAPEERERGITISTAHVEYETEQRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSATDGPMP-------QTREHILLARQVGVPALVVFMNKVDLV----DDAEILELVELEVRELLSSYEFPGDDIPVIKGSAVKALDGTNDEIGRNAVLE------LMAAVDSYIPQPERP 208          
BLAST of FC876185 vs. ExPASy Swiss-Prot
Match: EFTU_RICFE (Elongation factor Tu OS=Rickettsia felis GN=tuf PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.042e-20
Identity = 71/228 (31.14%), Postives = 108/228 (47.37%), Query Frame = 1
Query:    1 INIVVIGHVDSGKSTTTGHL---IYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEGDNMIERSXNLDWYKGPTLLDALDN-INEPER 663
            +NI  IGHVD GK++ T  +   + K GG      ++                  +D    E+ERGITI  A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  M+   NK+D           + +  EV   L K G+  +++P +    +   EG    E++ N        L+DA+D+ I +P R
Sbjct:   13 VNIGTIGHVDHGKTSLTAAITIVLAKTGGAKATAYDQ------------------IDAAPEEKERGITISTAHVEYETKNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLAKQVGVPAMVVFLNKVDMVD---DPDLLELVEMEVRELLSKYGFPGDEIPIIKGSALQALEGKPEGEKAIN-------ELMDAVDSYIPQPVR 205          
BLAST of FC876185 vs. ExPASy Swiss-Prot
Match: EFTU_PROMS (Elongation factor Tu OS=Prochlorococcus marinus (strain AS9601) GN=tuf PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.042e-20
Identity = 73/225 (32.44%), Postives = 108/225 (48.00%), Query Frame = 1
Query:    1 INIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISG---FEGDNMIERSXNLDWYKGPTLLDALD-NINEPER 663
            +NI  IGHVD GK+T T         I   + ++ + +A +           +D    ERERGITI+ A  ++ET   +   +D PGH D++KNMITG +Q D A+L+  +T G          QT+EH LLA  +GV  ++   NK D       +   + +  E+   L    +  + +P V +SG    EGD   E        K   L+ A+D +I EPER
Sbjct:   13 VNIGTIGHVDHGKTTLTA-------AITNVLAKKGQAQAQDYGD--------IDGAPEERERGITINTAHVEYETEGRHYAHVDCPGHADYVKNMITGAAQMDGAILVCAATDGPM-------AQTKEHILLAKQVGVPALVVALNKCDMVD---DEEIIELVEMEIRELLDSYDFPGDDIPIVQVSGLKALEGDTTWES-------KIEELMKAVDASIPEPER 205          
BLAST of FC876185 vs. ExPASy Swiss-Prot
Match: EFTU_PROM5 (Elongation factor Tu OS=Prochlorococcus marinus (strain MIT 9515) GN=tuf PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.042e-20
Identity = 73/225 (32.44%), Postives = 109/225 (48.44%), Query Frame = 1
Query:    1 INIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISG---FEGDNMIERSXNLDWYKGPTLLDALD-NINEPER 663
            +NI  IGHVD GK+T T         I   + ++ + +A +           +D    ERERGITI+ A  ++ET   +   +D PGH D++KNMITG +Q D A+L+  +T G          QT+EH LLA  +GV  ++   NK D       +   + +  E+   L    +  + +P V +SG    EGD+  E        K   L+ A+D +I EPER
Sbjct:   13 VNIGTIGHVDHGKTTLTA-------AITNVLAKKGQAQAQDYGD--------IDGAPEERERGITINTAHVEYETEGRHYAHVDCPGHADYVKNMITGAAQMDGAILVCAATDGPM-------AQTKEHILLAKQVGVPALVVALNKCDMVD---DEEIIELVEMEIRELLDSYDFPGDDIPIVQVSGLKALEGDSNWES-------KIEELMKAVDASIPEPER 205          
BLAST of FC876185 vs. ExPASy Swiss-Prot
Match: EFTU_NOVAD (Elongation factor Tu OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=tuf PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.042e-20
Identity = 75/227 (33.04%), Postives = 107/227 (47.14%), Query Frame = 1
Query:    4 NIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV---PISGFEG--DNMIERSXNLDWYKGPTLLDALD-NINEPERP 666
            NI  IGHVD GK+T T  +                K  AE     F     +DK   ERERGITI  A  ++ET   +   +D PGH D++KNMITG +Q D A+L++++  G          QTREH LLA  +GV  ++   NK+D       +   + +  EV   L    +  + +P V    ++  EG  DN+ + S N        L+ A+D  I +P RP
Sbjct:   14 NIGTIGHVDHGKTTLTAAIT---------------KVLAEQGGAEFTDYANIDKAPEERERGITISTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVNAADGPMP-------QTREHILLARQVGVPALVVYMNKVDQVD---DEEILELVELEVRELLSSYDFPGDDIPIVKGSALAALEGRDDNIGKDSIN-------ALMAAVDAYIPQPPRP 208          
The following BLAST results are available for this feature:
BLAST of FC876185 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_GLOVI6.923e-2031.88Elongation factor Tu OS=Gloeobacter violaceus GN=t... [more]
EFTU_CYAP86.923e-2030.26Elongation factor Tu OS=Cyanothece sp. (strain PCC... [more]
EFTU_BORGA6.923e-2031.08Elongation factor Tu OS=Borrelia garinii GN=tuf PE... [more]
EFTU_ANADE6.923e-2033.33Elongation factor Tu OS=Anaeromyxobacter dehalogen... [more]
EFTU_THENN9.042e-2032.43Elongation factor Tu OS=Thermotoga neapolitana (st... [more]
EFTU_SPHWW9.042e-2033.48Elongation factor Tu OS=Sphingomonas wittichii (st... [more]
EFTU_RICFE9.042e-2031.14Elongation factor Tu OS=Rickettsia felis GN=tuf PE... [more]
EFTU_PROMS9.042e-2032.44Elongation factor Tu OS=Prochlorococcus marinus (s... [more]
EFTU_PROM59.042e-2032.44Elongation factor Tu OS=Prochlorococcus marinus (s... [more]
EFTU_NOVAD9.042e-2033.04Elongation factor Tu OS=Novosphingobium aromaticiv... [more]

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Properties
Property NameValue
Genbank descriptionC32001D02EF DevOvary1 Citrus clementina cDNA clone C32001D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876185 ID=FC876185; Name=FC876185; organism=Citrus clementina; type=EST; length=667bp
ATCAACATTGTGGTCATCGGCCATGTCGACTCTGGAAAGTCGACCACCAC
CGGACACTTGATCTACAAGCTTGGTGGTATTGACAAGCGTGTGATCGAGA
GGTTCGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAATACGCC
TGGGTGCTCGACAAGCTCAAGGCTGAGCGTGAACGTGGTATTACCATTGA
TATTGCCTTGTGGAAGTTCGAGACCACCAAGTACTACTGCACCGTCATTG
ATGCTCCCGGACATCGTGACTTTATCAAGAACATGATTACCGGTACCTCA
CAGGCTGACTGTGCCGTCCTCATCATTGACTCCACCACCGGCGGTTTTGA
AGCTGGTATCTCCAAGGATGGTCAGACTCGTGAGCATGCTTTGCTTGCTT
TCACCCTTGGTGTGAAGCAGATGATTTGCTGCTGTAACAAGATGGACGCC
ACCACCCCCAAGTATTCAAAGGCTAGGTACGATGAAATTGTGAAGGAGGT
CTCTTCCTACCTGAAGAAGGTTGGATACAACCCCGAGAAAGTCCCATTCG
TGCCCATCTCTGGTTTCGAGGGTGACAACATGATTGAGAGGTCTANCAAC
CTTGACTGGTACAAGGGTCCCACCCTGCTGGACGCTCTTGACAATATCAA
TGAGCCCGAGAGGCCCT
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