FC876185

Overview
NameFC876185
Unique NameFC876185
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length667
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig789 contig Ccv1_Contig789:234..900. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876185 vs. ExPASy Swiss-Prot
Match: EF1A_ASHGO (Elongation factor 1-alpha OS=Ashbya gossypii GN=TEF PE=3 SV=1)

HSP 1 Score: 340.887 bits (873), Expect = 3.595e-93
Identity = 171/234 (73.08%), Postives = 191/234 (81.62%), Query Frame = 1
Query:    1 INIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSXNLDWY------------KGPTLLDALDNINEPERP 666
            +N+VVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEAAE+ K SFKYAWVLDKLKAERERGITIDIALWKFET KY+ TVIDAPGHRDFIKNMITGTSQADCA+LII    G FEAGISKDGQTREHALLA+TLGVKQ+I   NKMD+   K+ ++RY EIVKE S+++KKVGYNP+ VPFVPISG+ GDNMIE + N  WY            KG TLL+A+D I  P RP
Sbjct:    8 VNVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYHVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAYTLGVKQLIVAINKMDSV--KWDESRYQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEATTNAPWYKGWEKETKAGAVKGKTLLEAIDAIEPPVRP 239          
BLAST of FC876185 vs. ExPASy Swiss-Prot
Match: EF1A_YEAST (Elongation factor 1-alpha OS=Saccharomyces cerevisiae GN=TEF1 PE=1 SV=1)

HSP 1 Score: 340.502 bits (872), Expect = 4.695e-93
Identity = 171/234 (73.08%), Postives = 191/234 (81.62%), Query Frame = 1
Query:    1 INIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSXNLDWY------------KGPTLLDALDNINEPERP 666
            IN+VVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEAAE+ K SFKYAWVLDKLKAERERGITIDIALWKFET KY  TVIDAPGHRDFIKNMITGTSQADCA+LII    G FEAGISKDGQTREHALLAFTLGV+Q+I   NKMD+   K+ ++R+ EIVKE S+++KKVGYNP+ VPFVPISG+ GDNMIE + N  WY            KG TLL+A+D I +P RP
Sbjct:    8 INVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSV--KWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEATTNAPWYKGWEKETKAGVVKGKTLLEAIDAIEQPSRP 239          
BLAST of FC876185 vs. ExPASy Swiss-Prot
Match: EF1A_YARLI (Elongation factor 1-alpha OS=Yarrowia lipolytica GN=TEF PE=2 SV=2)

HSP 1 Score: 340.502 bits (872), Expect = 4.695e-93
Identity = 171/234 (73.08%), Postives = 191/234 (81.62%), Query Frame = 1
Query:    1 INIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSXNLDWY------------KGPTLLDALDNINEPERP 666
            +N+VVIGHVD+GKSTTTGHLIYK GGIDKR IE+FEKEA E+ K SFKYAWVLDKLKAERERGITIDIALWKF+T KYY TVIDAPGHRDFIKNMITGTSQADCA+LII    G FEAGISKDGQTREHALLAFTLGVKQ+I   NKMD+   K+S+ RY+EI KE ++++KKVGYNP+ VPFVPISG+ GDNMIE S N DWY            KG TLL+A+D I  P RP
Sbjct:    8 VNLVVIGHVDAGKSTTTGHLIYKCGGIDKRTIEKFEKEADELGKGSFKYAWVLDKLKAERERGITIDIALWKFQTPKYYVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVKQLIVAINKMDSV--KWSQDRYNEICKETANFVKKVGYNPKSVPFVPISGWNGDNMIEASTNCDWYKGWTKETKAGEVKGKTLLEAIDAIEPPVRP 239          
BLAST of FC876185 vs. ExPASy Swiss-Prot
Match: EF1A_PUCGR (Elongation factor 1-alpha OS=Puccinia graminis GN=TEF PE=3 SV=2)

HSP 1 Score: 340.502 bits (872), Expect = 4.695e-93
Identity = 172/234 (73.50%), Postives = 193/234 (82.48%), Query Frame = 1
Query:    1 INIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSXNLDWY------------KGPTLLDALDNINEPERP 666
            +N+VVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEAAE+ K SFKYAWVLDKLKAERERGITIDIALWKFET KYY TVIDAPGHRDFIKNMITGTSQADCA+LII + TG FEAGISKDGQTREHALLAFTLGV+Q+I   NKMD T  K+S+ R+ EIVKE S+++KKVGYNP+ + FVPISG+ GDNM+E S N+ W+            KG TLLDA+D I  P RP
Sbjct:    8 VNVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYYVTVIDAPGHRDFIKNMITGTSQADCAILIIAAGTGEFEAGISKDGQTREHALLAFTLGVRQLIVAINKMDTT--KWSEQRF-EIVKETSNFVKKVGYNPKSIAFVPISGWHGDNMLEESTNMGWFKGWTKETKAGVSKGKTLLDAIDAIEPPSRP 238          
BLAST of FC876185 vs. ExPASy Swiss-Prot
Match: EF1A2_RHIRA (Elongation factor 1-alpha OS=Rhizomucor racemosus GN=TEF-2 PE=3 SV=1)

HSP 1 Score: 340.502 bits (872), Expect = 4.695e-93
Identity = 170/234 (72.65%), Postives = 192/234 (82.05%), Query Frame = 1
Query:    1 INIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSXNLDWYK------------GPTLLDALDNINEPERP 666
            +N+VVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEAAE+ K SFKYAWVLDKLKAERERGITIDIALWKFET KY  TVIDAPGHRDFIKNMITGTSQADCA+LII   TG FEAGISKDGQTREHALLAFTLG +Q+I   NKMD T  K+S+ RY+EIVKEVS ++KK+G+NP+ VPFVPISG+ GDNM++ S N+ W+K            G TLL+A+D I  P RP
Sbjct:    8 VNVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGTGEFEAGISKDGQTREHALLAFTLGFRQLIVAINKMDTT--KWSQDRYNEIVKEVSGFIKKIGFNPKSVPFVPISGWHGDNMLDESTNMPWFKGWNKETKAGSKTGKTLLEAIDAIEPPVRP 239          
BLAST of FC876185 vs. ExPASy Swiss-Prot
Match: EF1A_CRYNE (Elongation factor 1-alpha OS=Cryptococcus neoformans GN=TEF1 PE=2 SV=2)

HSP 1 Score: 340.117 bits (871), Expect = 6.132e-93
Identity = 169/234 (72.22%), Postives = 192/234 (82.05%), Query Frame = 1
Query:    1 INIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSXNLDWY------------KGPTLLDALDNINEPERP 666
            +N+VVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA E+ K SFKYAWVLDKLKAERERGITIDIALWKFET +Y  TVIDAPGHRDFIKNMITGTSQADCA+LII +  G FEAGISKDGQTREHALLAFTLGV+Q+I  CNKMD  T K+S+ R++EIVKE + ++KKVGYNP+ VPFVPISG+ GDNM+E + N+ WY            KG TLL+A+D I  P RP
Sbjct:    8 VNVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQELGKSSFKYAWVLDKLKAERERGITIDIALWKFETPRYQVTVIDAPGHRDFIKNMITGTSQADCAILIIATGIGEFEAGISKDGQTREHALLAFTLGVRQLIVACNKMD--TCKWSEDRFNEIVKETNGFIKKVGYNPKAVPFVPISGWHGDNMLEETTNMPWYKGWTKETKSGVSKGKTLLEAIDAIEPPTRP 239          
BLAST of FC876185 vs. ExPASy Swiss-Prot
Match: EF1A1_RHIRA (Elongation factor 1-alpha OS=Rhizomucor racemosus GN=TEF-1 PE=3 SV=1)

HSP 1 Score: 339.732 bits (870), Expect = 8.009e-93
Identity = 170/234 (72.65%), Postives = 191/234 (81.62%), Query Frame = 1
Query:    1 INIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSXNLDWYK------------GPTLLDALDNINEPERP 666
            +N+VVIGHVDSGKSTTTGHLIYK GGIDKR IE FEKEAAE+ K SFKYAWVLDKLKAERERGITIDIALWKFET KY  TVIDAPGHRDFIKNMITGTSQADCA+LII   TG FEAGISKDGQTREHALLAFTLG +Q+I   NKMD T  K+S+ RY+EIVKEVS ++KK+G+NP+ VPFVPISG+ GDNM++ S N+ W+K            G TLL+A+D I  P RP
Sbjct:    8 VNVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEEFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGTGEFEAGISKDGQTREHALLAFTLGFRQLIVAINKMDTT--KWSQDRYNEIVKEVSGFIKKIGFNPKSVPFVPISGWHGDNMLDESTNMPWFKGWNKETKAGSKTGKTLLEAIDAIEPPVRP 239          
BLAST of FC876185 vs. ExPASy Swiss-Prot
Match: EF1A_ARXAD (Elongation factor 1-alpha OS=Arxula adeninivorans GN=TEF PE=3 SV=1)

HSP 1 Score: 339.347 bits (869), Expect = 1.046e-92
Identity = 170/234 (72.65%), Postives = 192/234 (82.05%), Query Frame = 1
Query:    1 INIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSXNLDWYK------------GPTLLDALDNINEPERP 666
            +N+VVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEAAE+ K SFKYAWVLDKLKAERER ITIDIALWKFET KYY TVIDAPGHRDFIKNMITGTSQADCA+LII   TG FEAGISKDGQTREHALLAFTLGV+Q+I   NKMD+    +S+ RY+EIVKE S+++KKVG+NP+ VPFVPISG+ GDNMIE + N  WYK            G TLL+A+D ++ P RP
Sbjct:    8 VNVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERVITIDIALWKFETPKYYVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGTGEFEAGISKDGQTREHALLAFTLGVRQLIVAINKMDSV--NWSEDRYNEIVKETSNFIKKVGFNPKAVPFVPISGWNGDNMIEATTNASWYKGWHKETKEGKATGKTLLEAIDAVDPPTRP 239          
BLAST of FC876185 vs. ExPASy Swiss-Prot
Match: EF1A_PIRIN (Elongation factor 1-alpha OS=Piriformospora indica GN=TEF1 PE=2 SV=1)

HSP 1 Score: 337.421 bits (864), Expect = 3.975e-92
Identity = 171/236 (72.46%), Postives = 191/236 (80.93%), Query Frame = 1
Query:    1 INIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSXNLDWYK--------------GPTLLDALDNINEPERP 666
            +N+VVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEAAE+ K SFKYAWVLDKLKAERERGITIDIALWK ET KY  TVIDAPGHRDFIKNMITGTSQADCA+LII   TG FEAGISKDGQTREHALLAFTLGV+Q+I   NKMD T   +S+AR++EIVKE S+++KKVGYNP+ V FVPISG+ GDNM+E S N+ WYK              G TL+DA+D I  P RP
Sbjct:    8 VNVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKSETPKYMVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGTGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDTT--NWSEARFNEIVKETSNFIKKVGYNPKTVAFVPISGWHGDNMLEPSTNMPWYKGWSKEVKGSSSPATGKTLVDAIDAIEPPVRP 241          
BLAST of FC876185 vs. ExPASy Swiss-Prot
Match: EF1A_PLAFK (Elongation factor 1-alpha OS=Plasmodium falciparum (isolate K1 / Thailand) GN=MEF-1 PE=3 SV=1)

HSP 1 Score: 335.109 bits (858), Expect = 1.973e-91
Identity = 161/222 (72.52%), Postives = 188/222 (84.68%), Query Frame = 1
Query:    1 INIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSXNLDWYKGPTLLDALDNINEPERP 666
            IN+VVIGHVDSGKSTTTGH+IYKLGGID+R IE+FEKE+AEM K SFKYAWVLDKLKAERERGITIDIALWKFET +Y+ TVIDAPGH+DFIKNMITGTSQAD A+L++ +  GGF+   SK+GQT+EH LLAFTLGVKQ++   NKMD  T KYS+ RY+EI KEV  YLKKVGY  +KV F+PISGFEGDN+IE+S    WYKG TL++ALD +  P+RP
Sbjct:    8 INLVVIGHVDSGKSTTTGHIIYKLGGIDRRTIEKFEKESAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPRYFFTVIDAPGHKDFIKNMITGTSQADVALLVVPADVGGFDGAFSKEGQTKEHVLLAFTLGVKQIVVGVNKMD--TVKYSEDRYEEIKKEVKDYLKKVGYQADKVDFIPISGFEGDNLIEKSDKTPWYKGRTLIEALDTMQPPKRP 227          
The following BLAST results are available for this feature:
BLAST of FC876185 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EF1A_ASHGO3.595e-9373.08Elongation factor 1-alpha OS=Ashbya gossypii GN=TE... [more]
EF1A_YEAST4.695e-9373.08Elongation factor 1-alpha OS=Saccharomyces cerevis... [more]
EF1A_YARLI4.695e-9373.08Elongation factor 1-alpha OS=Yarrowia lipolytica G... [more]
EF1A_PUCGR4.695e-9373.50Elongation factor 1-alpha OS=Puccinia graminis GN=... [more]
EF1A2_RHIRA4.695e-9372.65Elongation factor 1-alpha OS=Rhizomucor racemosus ... [more]
EF1A_CRYNE6.132e-9372.22Elongation factor 1-alpha OS=Cryptococcus neoforma... [more]
EF1A1_RHIRA8.009e-9372.65Elongation factor 1-alpha OS=Rhizomucor racemosus ... [more]
EF1A_ARXAD1.046e-9272.65Elongation factor 1-alpha OS=Arxula adeninivorans ... [more]
EF1A_PIRIN3.975e-9272.46Elongation factor 1-alpha OS=Piriformospora indica... [more]
EF1A_PLAFK1.973e-9172.52Elongation factor 1-alpha OS=Plasmodium falciparum... [more]

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Properties
Property NameValue
Genbank descriptionC32001D02EF DevOvary1 Citrus clementina cDNA clone C32001D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876185 ID=FC876185; Name=FC876185; organism=Citrus clementina; type=EST; length=667bp
ATCAACATTGTGGTCATCGGCCATGTCGACTCTGGAAAGTCGACCACCAC
CGGACACTTGATCTACAAGCTTGGTGGTATTGACAAGCGTGTGATCGAGA
GGTTCGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAATACGCC
TGGGTGCTCGACAAGCTCAAGGCTGAGCGTGAACGTGGTATTACCATTGA
TATTGCCTTGTGGAAGTTCGAGACCACCAAGTACTACTGCACCGTCATTG
ATGCTCCCGGACATCGTGACTTTATCAAGAACATGATTACCGGTACCTCA
CAGGCTGACTGTGCCGTCCTCATCATTGACTCCACCACCGGCGGTTTTGA
AGCTGGTATCTCCAAGGATGGTCAGACTCGTGAGCATGCTTTGCTTGCTT
TCACCCTTGGTGTGAAGCAGATGATTTGCTGCTGTAACAAGATGGACGCC
ACCACCCCCAAGTATTCAAAGGCTAGGTACGATGAAATTGTGAAGGAGGT
CTCTTCCTACCTGAAGAAGGTTGGATACAACCCCGAGAAAGTCCCATTCG
TGCCCATCTCTGGTTTCGAGGGTGACAACATGATTGAGAGGTCTANCAAC
CTTGACTGGTACAAGGGTCCCACCCTGCTGGACGCTCTTGACAATATCAA
TGAGCCCGAGAGGCCCT
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