FC876187

Overview
NameFC876187
Unique NameFC876187
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length717
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC876187_ssr8 microsatellite FC876187_ssr8:8..25. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of FC876187 vs. ExPASy Swiss-Prot
Match: FPPS_KLULA (Farnesyl pyrophosphate synthetase OS=Kluyveromyces lactis GN=FPS1 PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.727e-54
Identity = 114/208 (54.81%), Postives = 146/208 (70.19%), Query Frame = 2
Query:  116 MSDLKSRFIEVYGVLKQELLNDPA-FEFDHDSRQWVDRMLDYNVPGGKLNRGLSVVDSYRLLKEGK---ELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLS-----NHRRIVQYKTAYYSFYLPVACAL 712
            MSD +++F+EV+  L QEL +  A +    ++ +W ++ L+YN PGGKLNRGLSVVD+Y LLK  K   EL+ +E+   + LGWCIE LQAYFLV DD+MD S TRRGQPCW++V  VG IA ND  +L   I  +LK HFR +PYYVDLL+LF++V FQT  GQ++DLIT  E + DLS      H  IV +KTAYYSFYL VA A+
Sbjct:    1 MSDNRAQFLEVFPSLVQELRDILAGYGMPEEAIEWYEKSLNYNTPGGKLNRGLSVVDTYALLKGYKSVSELSAEEYKKVAILGWCIELLQAYFLVADDMMDQSITRRGQPCWYKVENVGDIAINDAFMLEGAIYCLLKKHFRTEPYYVDLLELFHDVTFQTELGQLLDLITAPEDKVDLSKFSLEKHSFIVIFKTAYYSFYLAVALAM 208          
BLAST of FC876187 vs. ExPASy Swiss-Prot
Match: FPPS_YEAST (Farnesyl pyrophosphate synthetase OS=Saccharomyces cerevisiae GN=FPP1 PE=1 SV=2)

HSP 1 Score: 202.986 bits (515), Expect = 1.325e-51
Identity = 106/203 (52.22%), Postives = 141/203 (69.46%), Query Frame = 2
Query:  128 KSRFIEVYGVLKQEL-LNDPAFEFDHDSRQWVDRMLDYNVPGGKLNRGLSVVDSYRLL--KEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLS-----NHRRIVQYKTAYYSFYLPVACAL 712
            + RF+ V+  L +EL  +  A+    ++  W    L+YN PGGKLNRGLSVVD+Y +L  K  ++L  +E+   + LGWCIE LQAYFLV DD+MD S TRRGQPCW++VP+VG IA ND  +L   I ++LK+HFR++ YY+D+ +LF+EV FQT  GQ++DLIT  E + DLS      H  IV +KTAYYSFYLPVA A+
Sbjct:    9 RERFLNVFPKLVEELNASLLAYGMPKEACDWYAHSLNYNTPGGKLNRGLSVVDTYAILSNKTVEQLGQEEYEKVAILGWCIELLQAYFLVADDMMDKSITRRGQPCWYKVPEVGEIAINDAFMLEAAIYKLLKSHFRNEKYYIDITELFHEVTFQTELGQLMDLITAPEDKVDLSKFSLKKHSFIVTFKTAYYSFYLPVALAM 211          
BLAST of FC876187 vs. ExPASy Swiss-Prot
Match: FPPS_NEUCR (Farnesyl pyrophosphate synthetase OS=Neurospora crassa GN=fpp PE=3 SV=2)

HSP 1 Score: 182.185 bits (461), Expect = 2.421e-45
Identity = 101/206 (49.03%), Postives = 132/206 (64.08%), Query Frame = 2
Query:  113 KMSDLKSRFIEVYGVLKQELLN-DPAFEFDHDSRQWVDRMLDYNVPGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSN-----HRRIVQYKTAYYSFYLPVACAL 712
            K + LK  F  V+  L++ LL    A++       W  + L+ N  GGK NRG+SV DS  +L  G+ LT++E+F ++ LGW  E LQA+FLV DDIMD S TRRG+PCW+R   VGM+A ND  +L + I  +LK +FR  P YVD L+LF+EV FQT  GQ+ DL+T  E + DL N     +  IV YKTAYYSFYLPVA A+
Sbjct:    3 KTTTLKE-FESVFPKLEEALLEYAKAYKLPEQMLSWYKQSLEVNTLGGKCNRGMSVPDSASILL-GRPLTEEEYFQAATLGWMTELLQAFFLVSDDIMDSSITRRGKPCWYRQEGVGMVAINDAFMLESAIYTLLKKYFRSHPRYVDFLELFHEVTFQTEMGQLCDLLTAPEDKVDLDNFSMDKYTFIVIYKTAYYSFYLPVALAM 206          
BLAST of FC876187 vs. ExPASy Swiss-Prot
Match: FPPS_GIBFU (Farnesyl pyrophosphate synthetase OS=Gibberella fujikuroi GN=FPPS PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 7.044e-45
Identity = 99/198 (50.00%), Postives = 127/198 (64.14%), Query Frame = 2
Query:  137 FIEVYGVLKQELLNDP-AFEFDHDSRQWVDRMLDYNVPGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSN-----HRRIVQYKTAYYSFYLPVACAL 712
            F  VY  L++ LL+   +++   +   W  R L+ N  GGK NRG+SV DS  LL E K LT++++F ++ LGW  E LQA+FLV DDIMD S TRRGQPCW+R   VGMIA ND  +L + I  +LK +FR  P Y DL++ F+E  FQT  GQ+ DL+T  E   +L N     +  IV YKTAYYSFYLPVA AL
Sbjct:   10 FNSVYPKLEEALLDHARSYKLPQEQLDWYKRSLEVNPLGGKCNRGMSVPDSVSLLLE-KPLTEEQYFQAATLGWMTELLQAFFLVSDDIMDSSITRRGQPCWYRQEGVGMIAINDAFMLESAIYTLLKKYFRSHPAYFDLIESFHETTFQTELGQLCDLLTAPEDNVNLDNFSLEKYSFIVIYKTAYYSFYLPVALAL 206          
BLAST of FC876187 vs. ExPASy Swiss-Prot
Match: FPPS_SCHPO (Farnesyl pyrophosphate synthetase OS=Schizosaccharomyces pombe GN=fps1 PE=1 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.566e-44
Identity = 94/203 (46.31%), Postives = 126/203 (62.07%), Query Frame = 2
Query:  122 DLKSRFIEVYGVLKQELLND-PAFEFDHDSRQWVDRMLDYNVPGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLS-----NHRRIVQYKTAYYSFYLPVACAL 712
            D +++F     V   E++N         D  +W    L +N  GGK NRGLSV+DSY +L  G  L +  +  ++ LGW +E LQ++FL+ DDIMD S TRRGQPCW+ +P VG IA ND  ++ + I  +LK HFR +  YVDL++LF++V FQT  GQ +DL+T  E   DLS      H  IV YKTA+YSFYLPVA A+
Sbjct:    5 DKRAKFESALPVFVDEIVNYLKTINIPDDVTEWYKNSLFHNTLGGKYNRGLSVIDSYEILL-GHPLDEAAYMKAAVLGWMVELLQSFFLIADDIMDASKTRRGQPCWYLMPGVGNIAINDAFMVESAIYFLLKKHFRQESCYVDLIELFHDVTFQTELGQQLDLLTAPEDSVDLSKFSLQKHSFIVIYKTAFYSFYLPVALAM 206          
BLAST of FC876187 vs. ExPASy Swiss-Prot
Match: FPPS_RAT (Farnesyl pyrophosphate synthetase OS=Rattus norvegicus GN=Fdps PE=2 SV=2)

HSP 1 Score: 173.326 bits (438), Expect = 1.125e-42
Identity = 88/197 (44.67%), Postives = 131/197 (66.50%), Query Frame = 2
Query:  137 FIEVYGVLKQELLNDPAFEFDHDSRQWVDRMLDYNVPGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDL-----SNHRRIVQYKTAYYSFYLPVACAL 712
            F ++  VL ++ L  P      D+   +  +L+YN  GGK NRGL+VV +++ L E ++   +    +  +GWC+E LQA+FLVLDDIMD S+TRRGQ CW++ P +G+ A ND +LL   I R+LK + R++PYY++LL+LF +  +QT  GQ +DLIT  +G+ DL       ++ IV+YKTA+YSFYLP+A A+
Sbjct:   21 FSQIVKVLTEDELGHPE---KGDAITRIKEVLEYNTVGGKYNRGLTVVQTFQELVEPRKQDAESLQRALTVGWCVELLQAFFLVLDDIMDSSYTRRGQICWYQKPGIGLDAINDALLLEAAIYRLLKFYCREQPYYLNLLELFLQSSYQTEIGQTLDLITAPQGQVDLGRYTEKRYKSIVKYKTAFYSFYLPIAAAM 214          
BLAST of FC876187 vs. ExPASy Swiss-Prot
Match: FPPS_BOVIN (Farnesyl pyrophosphate synthetase OS=Bos taurus GN=FDPS PE=1 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.918e-42
Identity = 91/202 (45.05%), Postives = 128/202 (63.37%), Query Frame = 2
Query:  122 DLKSRFIEVYGVLKQELLNDPAFEFDHDSRQWVDRMLDYNVPGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDL-----SNHRRIVQYKTAYYSFYLPVACAL 712
            D    F ++  VL +E +  P      D+   +  +L+YN  GGK NRGL+VV ++R L E  +   D    +  +GWC+E LQA+FLV DDIMD S TRRGQ CW++ P +G+ A ND  LL + I R+LK + R++PYY+DL++LF +  +QT  GQ +DLIT  +G  DL       ++ IV+YKTA+YSFYLPVA A+
Sbjct:   16 DFIQHFSQIVKVLTEEDIGHPEIG---DAITRLKEVLEYNAIGGKYNRGLTVVITFRELVEPGKQDPDSLQRALTVGWCVELLQAFFLVSDDIMDSSLTRRGQTCWYQKPGIGLDAINDAFLLESSIYRLLKLYCREQPYYLDLIELFLQSSYQTEIGQTLDLITAPQGNVDLGRFTEKRYKSIVKYKTAFYSFYLPVAAAM 214          
BLAST of FC876187 vs. ExPASy Swiss-Prot
Match: FPPS_CHICK (Farnesyl pyrophosphate synthetase OS=Gallus gallus GN=FDPS PE=1 SV=2)

HSP 1 Score: 168.703 bits (426), Expect = 2.770e-41
Identity = 86/167 (51.50%), Postives = 113/167 (67.66%), Query Frame = 2
Query:  227 MLDYNVPGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSN-----HRRIVQYKTAYYSFYLPVACAL 712
            +L YN PGGK NRGL+VV +YR L    +   +    + A+GWCIE  QA+FLV DDIMD S TRRGQ CW++   VG+ A ND  LL + + R+LK + R +PYYV LL+LF +  +QT  GQM+DLIT    + DLS+     ++ IV+YKTA+YSFYLPVA A+
Sbjct:   62 VLQYNAPGGKCNRGLTVVAAYRELSGPGQKDAESLRCALAVGWCIELFQAFFLVADDIMDQSLTRRGQLCWYKKEGVGLDAINDSFLLESSVYRVLKKYCRQRPYYVHLLELFLQTAYQTELGQMLDLITAPVSKVDLSHFSEERYKAIVKYKTAFYSFYLPVAAAM 228          
BLAST of FC876187 vs. ExPASy Swiss-Prot
Match: FPPS_MOUSE (Farnesyl pyrophosphate synthetase OS=Mus musculus GN=Fdps PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 6.171e-41
Identity = 87/197 (44.16%), Postives = 128/197 (64.97%), Query Frame = 2
Query:  137 FIEVYGVLKQELLNDPAFEFDHDSRQWVDRMLDYNVPGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDL-----SNHRRIVQYKTAYYSFYLPVACAL 712
            F ++  VL ++ L  P      D+   +  +L+YN  GGK NRGL+VV +++ L E K+   +    +  +GWC+E LQA+FLV DDIMD S TRRGQ CW++ P +G+ A ND +LL   I R+LK + R++PYY++LL+LF +  +QT  GQ +DL+T  +G  DL       ++ IV+YKTA+YSFYLP+A A+
Sbjct:   21 FSQIVKVLTEKELGHPEIG---DAIARLKEVLEYNALGGKYNRGLTVVQAFQELVEPKKQDAESLQRALTVGWCVELLQAFFLVSDDIMDSSLTRRGQICWYQKPGIGLDAINDALLLEASIYRLLKFYCREQPYYLNLLELFLQSSYQTEIGQTLDLMTAPQGHVDLGRYTEKRYKSIVKYKTAFYSFYLPIAAAM 214          
BLAST of FC876187 vs. ExPASy Swiss-Prot
Match: FPPS_HUMAN (Farnesyl pyrophosphate synthetase OS=Homo sapiens GN=FDPS PE=1 SV=4)

HSP 1 Score: 167.162 bits (422), Expect = 8.060e-41
Identity = 88/202 (43.56%), Postives = 128/202 (63.37%), Query Frame = 2
Query:  122 DLKSRFIEVYGVLKQELLNDPAFEFDHDSRQWVDRMLDYNVPGGKLNRGLSVVDSYRLLKEGKELTDDEFFLSSALGWCIEWLQAYFLVLDDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDL-----SNHRRIVQYKTAYYSFYLPVACAL 712
            D    F ++  VL ++ +  P      D+   +  +L+YN  GGK NRGL+VV ++R L E ++   D    +  +GWC+E LQA+FLV DDIMD S TRRGQ CW++ P VG+ A ND  LL   I R+LK + R++PYY++L++LF +  +QT  GQ +DL+T  +G  DL       ++ IV+YKTA+YSFYLP+A A+
Sbjct:   82 DFVQHFSQIVRVLTEDEMGHPEIG---DAIARLKEVLEYNAIGGKYNRGLTVVVAFRELVEPRKQDADSLQRAWTVGWCVELLQAFFLVADDIMDSSLTRRGQICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKTAFYSFYLPIAAAM 280          
The following BLAST results are available for this feature:
BLAST of FC876187 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
FPPS_KLULA3.727e-5454.81Farnesyl pyrophosphate synthetase OS=Kluyveromyces... [more]
FPPS_YEAST1.325e-5152.22Farnesyl pyrophosphate synthetase OS=Saccharomyces... [more]
FPPS_NEUCR2.421e-4549.03Farnesyl pyrophosphate synthetase OS=Neurospora cr... [more]
FPPS_GIBFU7.044e-4550.00Farnesyl pyrophosphate synthetase OS=Gibberella fu... [more]
FPPS_SCHPO4.566e-4446.31Farnesyl pyrophosphate synthetase OS=Schizosacchar... [more]
FPPS_RAT1.125e-4244.67Farnesyl pyrophosphate synthetase OS=Rattus norveg... [more]
FPPS_BOVIN1.918e-4245.05Farnesyl pyrophosphate synthetase OS=Bos taurus GN... [more]
FPPS_CHICK2.770e-4151.50Farnesyl pyrophosphate synthetase OS=Gallus gallus... [more]
FPPS_MOUSE6.171e-4144.16Farnesyl pyrophosphate synthetase OS=Mus musculus ... [more]
FPPS_HUMAN8.060e-4143.56Farnesyl pyrophosphate synthetase OS=Homo sapiens ... [more]

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Properties
Property NameValue
Genbank descriptionC32001D07EF DevOvary1 Citrus clementina cDNA clone C32001D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876187 ID=FC876187; Name=FC876187; organism=Citrus clementina; type=EST; length=717bp
GAAACAACTCTCTCTCTCTCTCTCTTCTCTGTATTTTGCTTTCTTTCATT
CTGTTTCTCTCTTTTTTTTCTTACTTTTTTTTTTGGTGGTGGGTCGCAAA
AGCGGAAGGTAAAAAATGAGTGATCTGAAGTCAAGATTCATTGAGGTGTA
TGGCGTTTTAAAACAAGAGCTGCTGAATGATCCTGCATTTGAGTTCGACC
ACGATTCTCGCCAATGGGTTGATCGTATGCTGGATTACAATGTACCTGGA
GGAAAGCTGAACCGAGGGCTATCTGTTGTTGACAGCTACAGGTTACTGAA
AGAAGGAAAAGAACTAACAGATGATGAATTCTTTCTCTCATCTGCACTAG
GCTGGTGCATCGAATGGCTTCAAGCATATTTTCTTGTTCTTGATGATATC
ATGGATGGCTCTCATACACGCCGTGGTCAACCTTGCTGGTTCAGAGTCCC
CAAGGTTGGTATGATTGCTGCAAATGATGGTGTCTTACTACGCAACCATA
TCTCCAGAATTCTCAAGAATCATTTTAGAGACAAGCCTTATTACGTGGAC
CTGTTGGATTTATTTAATGAGGTGGAATTTCAAACAGCTTCAGGACAAAT
GATAGACTTAATTACCACAATCGAAGGAGAGAAAGATCTATCGAATCATC
GTCGCATTGTTCAGTACAAAACTGCTTACTATTCATTTTACCTTCCAGTT
GCTTGTGCATTACTTAT
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