FC876189

Overview
NameFC876189
Unique NameFC876189
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_PSEA7 (Triosephosphate isomerase OS=Pseudomonas aeruginosa (strain PA7) GN=tpiA PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.334e-17
Identity = 51/124 (41.13%), Postives = 68/124 (54.84%), Query Frame = 1
Query:  310 VGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDR-IEIAAQNSWVGK-GGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            V GNWK +GT  S+  L+  L    L            ++I QV   L  + I + AQNS V    GA TGEI+  QL D GC  V++GHSERR ++GE D+ + +K A A S GL  + C+GE
Sbjct:    6 VAGNWKMHGTHSSVADLIKGLRQLALPSGVDVAVMPPCLFISQVVQGLAGKAIGVGAQNSAVEPMQGALTGEIAPSQLADAGCGMVLVGHSERRLILGESDEVVSRKFAAAQSCGLVPVLCVGE 129          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_ENTCL (Triosephosphate isomerase OS=Enterobacter cloacae GN=tpiA PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.334e-17
Identity = 51/124 (41.13%), Postives = 70/124 (56.45%), Query Frame = 1
Query:  310 VGGNWKCNGTKESITKLVSDLN-DAKLEXXXXXXXXXXFVYIDQVKNSLT-DRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            V GNWK NG++  + +LV++L  +               +Y+D  K++     I + AQN  V   GAFTGE S E LKDIG K++++GHSERR    E D+FI KK A    +GL  + CIGE
Sbjct:    6 VMGNWKLNGSRHMVNELVANLRKELAGVTGCAVAIAPPDMYLDLAKHAADGSHIILGAQNVDVNLSGAFTGETSAEMLKDIGAKYIIIGHSERRTYHKESDEFIAKKFAVLKEQGLIPVLCIGE 129          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_CYTH3 (Triosephosphate isomerase OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=tpiA PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.334e-17
Identity = 51/128 (39.84%), Postives = 68/128 (53.12%), Query Frame = 1
Query:  301 KFFVGGNWKCNGTKESITKLVSDL-NDAKLEXXXXXXXXXXFVYID--QVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            K  + GNWK N T E    L S++ N AK E            YI    V   + D++ I AQN +  + GAFTGEIS   LK +G K+V++GHSERR   GE +Q +  K   +L+ GL  + C GE
Sbjct:    3 KKVIAGNWKMNKTLEEGLSLASEVANMAKDEVPADVNLVMCIPYISLAAVSKVINDKVAIGAQNVYQKESGAFTGEISAPMLKSVGVKYVIIGHSERREYFGETNQQLADKVTISLANGLTPLFCCGE 130          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_VIBMA (Triosephosphate isomerase OS=Vibrio marinus GN=tpiA PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.354e-17
Identity = 49/127 (38.58%), Postives = 73/127 (57.48%), Query Frame = 1
Query:  310 VGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXX--FVYIDQVKNSLTDR---IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            V GNWK NG+KE +  L++ LN A+LE             +++D  + +LT+    I + AQN+ +   GAFTG++S   LK+ G   +++GHSERR    E D+F+ KK A+    GL  + CIGE
Sbjct:    6 VMGNWKLNGSKEMVVDLLNGLN-AELEGVTGVDVAVAPPALFVDLAERTLTEAGSAIILGAQNTDLNNSGAFTGDMSPAMLKEFGATHIIIGHSERREYHAESDEFVAKKFAFLKENGLTPVLCIGE 131          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: PGKT_THEMA (Bifunctional PGK/TIM OS=Thermotoga maritima GN=pgk/tpi PE=1 SV=4)

HSP 1 Score: 88.1965 bits (217), Expect = 4.354e-17
Identity = 50/132 (37.88%), Postives = 77/132 (58.33%), Query Frame = 1
Query:  295 SNKFFVGGNWKCNGT----KESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDR-IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            + K  + GNWK + T    K+ ++ LV++L+D K            F  + +V   L+ R I++ AQN +    GAFTGEIS   L++IG ++V++GHSERR +  EDD+FI +K    L +G+  I C+GE
Sbjct:  401 TRKLILAGNWKMHKTISEAKKFVSLLVNELHDVK---EFEIVVCPPFTALSEVGEILSGRNIKLGAQNVFYEDQGAFTGEISPLMLQEIGVEYVIVGHSERRRIFKEDDEFINRKVKAVLEKGMTPILCVGE 529          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_VIBVY (Triosephosphate isomerase OS=Vibrio vulnificus (strain YJ016) GN=tpiA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.687e-17
Identity = 49/127 (38.58%), Postives = 72/127 (56.69%), Query Frame = 1
Query:  310 VGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXX--FVYIDQVKNSLTD---RIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            V GNWK NG+K  + +L++ LN A+LE             +YID  +  + +   +I + AQN+ +   GAFTG++S   LKD G   +++GHSERR    E D+F+ KK A+    GL  + CIGE
Sbjct:    6 VMGNWKLNGSKTMVAELLTGLN-AELEGVEGVDVAVAPPALYIDLAERLIAEGGNKIILGAQNTDINNSGAFTGDMSPAMLKDFGATHIIIGHSERREYHNESDEFVAKKFAFLKENGLKPVFCIGE 131          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_VIBVU (Triosephosphate isomerase OS=Vibrio vulnificus GN=tpiA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.687e-17
Identity = 49/127 (38.58%), Postives = 72/127 (56.69%), Query Frame = 1
Query:  310 VGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXX--FVYIDQVKNSLTD---RIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            V GNWK NG+K  + +L++ LN A+LE             +YID  +  + +   +I + AQN+ +   GAFTG++S   LKD G   +++GHSERR    E D+F+ KK A+    GL  + CIGE
Sbjct:    6 VMGNWKLNGSKTMVAELLTGLN-AELEGVEGVDVAVAPPALYIDLAERLIAEGGNKIILGAQNTDINNSGAFTGDMSPAMLKDFGATHIIIGHSERREYHNESDEFVAKKFAFLKENGLKPVFCIGE 131          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_THEPX (Triosephosphate isomerase OS=Thermoanaerobacter sp. (strain X514) GN=tpiA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.687e-17
Identity = 49/123 (39.84%), Postives = 67/123 (54.47%), Query Frame = 1
Query:  310 VGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTD-RIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            + GNWK + T     KLV +L     +          FV + +V   +    I + AQ+ +  + GA+TGEIS   LK+IG K+VV+GHSERR   GE D+ + KK   ALS GL  I C+GE
Sbjct:    6 IAGNWKMHMTPSEAVKLVDELIPQVKDAKAEVVVIPPFVDLTEVNKVIQGTNILLGAQDMFWEEKGAYTGEISPLMLKEIGVKYVVIGHSERRQYFGETDEMVNKKVLSALSHGLSPIVCVGE 128          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_THEP3 (Triosephosphate isomerase OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=tpiA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.687e-17
Identity = 49/123 (39.84%), Postives = 67/123 (54.47%), Query Frame = 1
Query:  310 VGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTD-RIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            + GNWK + T     KLV +L     +          FV + +V   +    I + AQ+ +  + GA+TGEIS   LK+IG K+VV+GHSERR   GE D+ + KK   ALS GL  I C+GE
Sbjct:    6 IAGNWKMHMTPSEAVKLVEELIPQVKDAKAEVVVIPPFVDLTEVNKVIQGTNILLGAQDMFWEEKGAYTGEISPLMLKEIGVKYVVIGHSERRQYFGETDEMVNKKVLSALSHGLSPIVCVGE 128          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_LEGPL (Triosephosphate isomerase OS=Legionella pneumophila (strain Lens) GN=tpiA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.687e-17
Identity = 45/124 (36.29%), Postives = 70/124 (56.45%), Query Frame = 1
Query:  310 VGGNWKCNGTKESITKLVSDLNDA-KLEXXXXXXXXXXFVYIDQVKNSL-TDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            V GNWK NG  + +T+LVS +      +           +YI +V++ L T +I + AQN +    GA+TGE+S   LKD  C++V++GHSERR    ED+ F+ +K  +    G+  + C+GE
Sbjct:    6 VAGNWKMNGQIQQVTELVSQIEKLIGFDCAAQVAVMPPSIYIPKVRDCLRTGKIVVGAQNVYPKDYGAYTGELSAPMLKDFDCRYVLVGHSERRQFFHEDENFVAQKFHHVKDHGMIPVLCVGE 129          
The following BLAST results are available for this feature:
BLAST of FC876189 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 483
Match NameE-valueIdentityDescription
TPIS_PSEA73.334e-1741.13Triosephosphate isomerase OS=Pseudomonas aeruginos... [more]
TPIS_ENTCL3.334e-1741.13Triosephosphate isomerase OS=Enterobacter cloacae ... [more]
TPIS_CYTH33.334e-1739.84Triosephosphate isomerase OS=Cytophaga hutchinsoni... [more]
TPIS_VIBMA4.354e-1738.58Triosephosphate isomerase OS=Vibrio marinus GN=tpi... [more]
PGKT_THEMA4.354e-1737.88Bifunctional PGK/TIM OS=Thermotoga maritima GN=pgk... [more]
TPIS_VIBVY5.687e-1738.58Triosephosphate isomerase OS=Vibrio vulnificus (st... [more]
TPIS_VIBVU5.687e-1738.58Triosephosphate isomerase OS=Vibrio vulnificus GN=... [more]
TPIS_THEPX5.687e-1739.84Triosephosphate isomerase OS=Thermoanaerobacter sp... [more]
TPIS_THEP35.687e-1739.84Triosephosphate isomerase OS=Thermoanaerobacter ps... [more]
TPIS_LEGPL5.687e-1736.29Triosephosphate isomerase OS=Legionella pneumophil... [more]

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Properties
Property NameValue
Genbank descriptionC32001D11EF DevOvary1 Citrus clementina cDNA clone C32001D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876189 ID=FC876189; Name=FC876189; organism=Citrus clementina; type=EST; length=678bp
TCGCCGGGGGGAAACCACAACGTGACCCTTCGTCCCACCCTCTCCACCAA
CCAAACACACATACACAAAGGCTGAGCAAGAGCAAGAGCAAGAGCCAAAG
CAGCTGAGATTATAATTTGACTTTCACTTTGACTTTTCACAATGGCGTCA
ATGGTCTCCACAAACTGCGCTCAATTCTCCGGCCTGCGCCGCTCATCGCC
CACACAGTCTTTTTCACAGCACGTCAACTCTCACCTCCGCCTCTTCTCTT
CTCGTAGACCTCGCCGCGGCAGCAGCGTTGTCGCCATGGCCAGCTCCAAC
AAGTTCTTTGTTGGGGGAAACTGGAAGTGTAATGGAACAAAGGAATCTAT
CACCAAGCTTGTTTCGGACCTGAACGATGCAAAGTTGGAGGCAGATGTTG
ATGTTGTGGTAGCGCCTCCCTTTGTTTACATTGATCAAGTGAAGAATTCA
TTAACAGATAGAATTGAGATAGCAGCTCAGAACTCTTGGGTCGGAAAAGG
TGGAGCATTTACAGGAGAAATCAGTGTGGAACAACTGAAAGATATTGGCT
GCAAGTGGGTTGTTCTGGGGCATTCTGAGCGCAGACATGTTATTGGTGAA
GATGATCAGTTTATAGGGAAGAAAGCTGCCTATGCCTTGAGCGAGGGACT
TGGTGTAATAGCTTGTATCGGGGAACAG
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