FC876189

Overview
NameFC876189
Unique NameFC876189
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_ALCBS (Triosephosphate isomerase OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=tpiA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.687e-17
Identity = 46/122 (37.70%), Postives = 68/122 (55.74%), Query Frame = 1 
Query:  310 VGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            V GNWK NG K+ +T++   L  A             F Y+   ++++   + I +QN    + GAFTGE+S   L ++GC +V++GHSERR + GE D  I  K A+A + GL  I C+GE
Sbjct:    7 VAGNWKMNGRKDLLTEMADAL--AGYAGAAEVVICPPFPYLAAARSAMPGAVGIGSQNVSEQEDGAFTGEVSAPMLAEVGCGYVIIGHSERRALYGETDAQIASKFAHAQAAGLVPILCVGE 126
[Close]
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_CLOBA (Triosephosphate isomerase OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=tpiA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 7.427e-17
Identity = 48/126 (38.10%), Postives = 66/126 (52.38%), Query Frame = 1 
Query:  301 KFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLT-DRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            K  + GNWK N T +   K+V +L     +          FV +D VK +     I++AAQN    + GAFTGE+S   L+ +G ++VVLGHSERR    E D+ I KK   A +  +  I C GE
Sbjct:    3 KAIIAGNWKMNKTVDEAVKVVEELKPLVKDATCDVVVCPTFVCLDAVKKATAGSNIKVAAQNMHFEESGAFTGEVSPGMLEAMGIEYVVLGHSERREYFNETDEAINKKVKAAFAHNITPIVCCGE 128
[Close]
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_YERPY (Triosephosphate isomerase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=tpiA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.700e-17
Identity = 49/124 (39.52%), Postives = 67/124 (54.03%), Query Frame = 1 
Query:  310 VGGNWKCNGTKESITKLVSDLN-DAKLEXXXXXXXXXXFVYIDQVKNSLT-DRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            V GNWK NG+   + +L++ L  +               +Y++Q K+ L   RI + AQN  V   GAFTGE S E LKDIG +++++GHSERR    E D+ I KK       GL  + CIGE
Sbjct:    6 VMGNWKLNGSTHMVNELIAGLRKELSTVDGCGVAIAPPAIYLNQAKHELAGSRIALGAQNVDVNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHQESDELIAKKFGVLKEIGLIPVLCIGE 129
[Close]
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_YERPS (Triosephosphate isomerase OS=Yersinia pseudotuberculosis GN=tpiA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.700e-17
Identity = 49/124 (39.52%), Postives = 67/124 (54.03%), Query Frame = 1 
Query:  310 VGGNWKCNGTKESITKLVSDLN-DAKLEXXXXXXXXXXFVYIDQVKNSLT-DRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            V GNWK NG+   + +L++ L  +               +Y++Q K+ L   RI + AQN  V   GAFTGE S E LKDIG +++++GHSERR    E D+ I KK       GL  + CIGE
Sbjct:    6 VMGNWKLNGSTHMVNELIAGLRKELSTVDGCGVAIAPPAIYLNQAKHELAGSRIALGAQNVDVNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHQESDELIAKKFGVLKEIGLIPVLCIGE 129
[Close]
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_YERPP (Triosephosphate isomerase OS=Yersinia pestis (strain Pestoides F) GN=tpiA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.700e-17
Identity = 49/124 (39.52%), Postives = 67/124 (54.03%), Query Frame = 1 
Query:  310 VGGNWKCNGTKESITKLVSDLN-DAKLEXXXXXXXXXXFVYIDQVKNSLT-DRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            V GNWK NG+   + +L++ L  +               +Y++Q K+ L   RI + AQN  V   GAFTGE S E LKDIG +++++GHSERR    E D+ I KK       GL  + CIGE
Sbjct:    6 VMGNWKLNGSTHMVNELIAGLRKELSTVDGCGVAIAPPAIYLNQAKHELAGSRIALGAQNVDVNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHQESDELIAKKFGVLKEIGLIPVLCIGE 129
[Close]
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_YERPN (Triosephosphate isomerase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=tpiA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.700e-17
Identity = 49/124 (39.52%), Postives = 67/124 (54.03%), Query Frame = 1 
Query:  310 VGGNWKCNGTKESITKLVSDLN-DAKLEXXXXXXXXXXFVYIDQVKNSLT-DRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            V GNWK NG+   + +L++ L  +               +Y++Q K+ L   RI + AQN  V   GAFTGE S E LKDIG +++++GHSERR    E D+ I KK       GL  + CIGE
Sbjct:    6 VMGNWKLNGSTHMVNELIAGLRKELSTVDGCGVAIAPPAIYLNQAKHELAGSRIALGAQNVDVNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHQESDELIAKKFGVLKEIGLIPVLCIGE 129
[Close]
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_YERPG (Triosephosphate isomerase OS=Yersinia pestis bv. Antiqua (strain Angola) GN=tpiA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.700e-17
Identity = 49/124 (39.52%), Postives = 67/124 (54.03%), Query Frame = 1 
Query:  310 VGGNWKCNGTKESITKLVSDLN-DAKLEXXXXXXXXXXFVYIDQVKNSLT-DRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            V GNWK NG+   + +L++ L  +               +Y++Q K+ L   RI + AQN  V   GAFTGE S E LKDIG +++++GHSERR    E D+ I KK       GL  + CIGE
Sbjct:    6 VMGNWKLNGSTHMVNELIAGLRKELSTVDGCGVAIAPPAIYLNQAKHELAGSRIALGAQNVDVNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHQESDELIAKKFGVLKEIGLIPVLCIGE 129
[Close]
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_YERPE (Triosephosphate isomerase OS=Yersinia pestis GN=tpiA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.700e-17
Identity = 49/124 (39.52%), Postives = 67/124 (54.03%), Query Frame = 1 
Query:  310 VGGNWKCNGTKESITKLVSDLN-DAKLEXXXXXXXXXXFVYIDQVKNSLT-DRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            V GNWK NG+   + +L++ L  +               +Y++Q K+ L   RI + AQN  V   GAFTGE S E LKDIG +++++GHSERR    E D+ I KK       GL  + CIGE
Sbjct:    6 VMGNWKLNGSTHMVNELIAGLRKELSTVDGCGVAIAPPAIYLNQAKHELAGSRIALGAQNVDVNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHQESDELIAKKFGVLKEIGLIPVLCIGE 129
[Close]
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_YERPB (Triosephosphate isomerase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=tpiA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.700e-17
Identity = 49/124 (39.52%), Postives = 67/124 (54.03%), Query Frame = 1 
Query:  310 VGGNWKCNGTKESITKLVSDLN-DAKLEXXXXXXXXXXFVYIDQVKNSLT-DRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            V GNWK NG+   + +L++ L  +               +Y++Q K+ L   RI + AQN  V   GAFTGE S E LKDIG +++++GHSERR    E D+ I KK       GL  + CIGE
Sbjct:    6 VMGNWKLNGSTHMVNELIAGLRKELSTVDGCGVAIAPPAIYLNQAKHELAGSRIALGAQNVDVNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHQESDELIAKKFGVLKEIGLIPVLCIGE 129
[Close]
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_YERPA (Triosephosphate isomerase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=tpiA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.700e-17
Identity = 49/124 (39.52%), Postives = 67/124 (54.03%), Query Frame = 1 
Query:  310 VGGNWKCNGTKESITKLVSDLN-DAKLEXXXXXXXXXXFVYIDQVKNSLT-DRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            V GNWK NG+   + +L++ L  +               +Y++Q K+ L   RI + AQN  V   GAFTGE S E LKDIG +++++GHSERR    E D+ I KK       GL  + CIGE
Sbjct:    6 VMGNWKLNGSTHMVNELIAGLRKELSTVDGCGVAIAPPAIYLNQAKHELAGSRIALGAQNVDVNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHQESDELIAKKFGVLKEIGLIPVLCIGE 129
The following BLAST results are available for this feature:
BLAST of FC876189 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 483
Match NameE-valueIdentityDescription
TPIS_ALCBS5.687e-1737.70Triosephosphate isomerase OS=Alcanivorax borkumens... [more]
TPIS_CLOBA7.427e-1738.10Triosephosphate isomerase OS=Clostridium botulinum... [more]
TPIS_YERPY9.700e-1739.52Triosephosphate isomerase OS=Yersinia pseudotuberc... [more]
TPIS_YERPS9.700e-1739.52Triosephosphate isomerase OS=Yersinia pseudotuberc... [more]
TPIS_YERPP9.700e-1739.52Triosephosphate isomerase OS=Yersinia pestis (stra... [more]
TPIS_YERPN9.700e-1739.52Triosephosphate isomerase OS=Yersinia pestis bv. A... [more]
TPIS_YERPG9.700e-1739.52Triosephosphate isomerase OS=Yersinia pestis bv. A... [more]
TPIS_YERPE9.700e-1739.52Triosephosphate isomerase OS=Yersinia pestis GN=tp... [more]
TPIS_YERPB9.700e-1739.52Triosephosphate isomerase OS=Yersinia pseudotuberc... [more]
TPIS_YERPA9.700e-1739.52Triosephosphate isomerase OS=Yersinia pestis bv. A... [more]

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Properties
Property NameValue
Genbank descriptionC32001D11EF DevOvary1 Citrus clementina cDNA clone C32001D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876189 ID=FC876189; Name=FC876189; organism=Citrus clementina; type=EST; length=678bp
TCGCCGGGGGGAAACCACAACGTGACCCTTCGTCCCACCCTCTCCACCAA
CCAAACACACATACACAAAGGCTGAGCAAGAGCAAGAGCAAGAGCCAAAG
CAGCTGAGATTATAATTTGACTTTCACTTTGACTTTTCACAATGGCGTCA
ATGGTCTCCACAAACTGCGCTCAATTCTCCGGCCTGCGCCGCTCATCGCC
CACACAGTCTTTTTCACAGCACGTCAACTCTCACCTCCGCCTCTTCTCTT
CTCGTAGACCTCGCCGCGGCAGCAGCGTTGTCGCCATGGCCAGCTCCAAC
AAGTTCTTTGTTGGGGGAAACTGGAAGTGTAATGGAACAAAGGAATCTAT
CACCAAGCTTGTTTCGGACCTGAACGATGCAAAGTTGGAGGCAGATGTTG
ATGTTGTGGTAGCGCCTCCCTTTGTTTACATTGATCAAGTGAAGAATTCA
TTAACAGATAGAATTGAGATAGCAGCTCAGAACTCTTGGGTCGGAAAAGG
TGGAGCATTTACAGGAGAAATCAGTGTGGAACAACTGAAAGATATTGGCT
GCAAGTGGGTTGTTCTGGGGCATTCTGAGCGCAGACATGTTATTGGTGAA
GATGATCAGTTTATAGGGAAGAAAGCTGCCTATGCCTTGAGCGAGGGACT
TGGTGTAATAGCTTGTATCGGGGAACAG
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