FC876189

Overview
NameFC876189
Unique NameFC876189
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_YERP3 (Triosephosphate isomerase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=tpiA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.700e-17
Identity = 49/124 (39.52%), Postives = 67/124 (54.03%), Query Frame = 1
Query:  310 VGGNWKCNGTKESITKLVSDLN-DAKLEXXXXXXXXXXFVYIDQVKNSLT-DRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            V GNWK NG+   + +L++ L  +               +Y++Q K+ L   RI + AQN  V   GAFTGE S E LKDIG +++++GHSERR    E D+ I KK       GL  + CIGE
Sbjct:    6 VMGNWKLNGSTHMVNELIAGLRKELSTVDGCGVAIAPPAIYLNQAKHELAGSRIALGAQNVDVNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHQESDELIAKKFGVLKEIGLIPVLCIGE 129          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_PHOLL (Triosephosphate isomerase OS=Photorhabdus luminescens subsp. laumondii GN=tpiA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.700e-17
Identity = 49/124 (39.52%), Postives = 68/124 (54.84%), Query Frame = 1
Query:  310 VGGNWKCNGTKESITKLVSDLN-DAKLEXXXXXXXXXXFVYIDQVKNSLT-DRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            V GNWK NG+   + +L++ L  +               +Y+ Q K +L   RI + AQ+  V   GAFTGE S   LKDIG +++++GHSERR    E D+FI KK A    +GL  + CIGE
Sbjct:    6 VMGNWKLNGSTHMVNELITGLRQELSSVTGCDVAIAPPALYLSQAKQALAGSRIALGAQDVDVNLSGAFTGETSATMLKDIGAEYIIIGHSERRTYHQESDEFIAKKFAILKQQGLIPVLCIGE 129          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_PELCD (Triosephosphate isomerase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.700e-17
Identity = 49/125 (39.20%), Postives = 65/125 (52.00%), Query Frame = 1
Query:  307 FVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXX-FVYIDQVKNSLTDR-IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            F+ GNWK + T      LV +L  A  +           F  +  V  +L    I +AAQN +    GAFTGE+S   LKD GC++V++GHSERR +  E D FI +K    +  GL  I CIGE
Sbjct:    5 FIAGNWKLHKTSAEAAALVGELKGALSDVVDRDIVVAPVFTSLAAVIATLEKSDISVAAQNCYPENQGAFTGEVSPALLKDAGCRYVIVGHSERRQLFAESDAFINRKVKAVIDAGLSAILCIGE 129          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_ENT38 (Triosephosphate isomerase OS=Enterobacter sp. (strain 638) GN=tpiA PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.700e-17
Identity = 49/124 (39.52%), Postives = 69/124 (55.65%), Query Frame = 1
Query:  310 VGGNWKCNGTKESITKLVSDLN-DAKLEXXXXXXXXXXFVYIDQVKNSLT-DRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            V GNWK NG++  + +L+++L  +               +Y+D  K++     I + AQN  V   GAFTGE S E LKDIG K++++GHSERR    E D+ I KK A    +GL  + CIGE
Sbjct:    6 VMGNWKLNGSRHMVNELIANLRKELAGVTGCAVAIAPPDIYLDLAKHAADGSHIVLGAQNVDVNLSGAFTGETSAEMLKDIGAKYIIIGHSERRTYHKESDELIAKKFAVLKEQGLIPVLCIGE 129          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_PSE14 (Triosephosphate isomerase OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=tpiA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.267e-16
Identity = 49/124 (39.52%), Postives = 69/124 (55.65%), Query Frame = 1
Query:  310 VGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSL-TDRIEIAAQNSWV-GKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            V GNWK +GT+ S+ +L+  L    L            ++ +QV   L    I + AQ++ +  + GA TGEI+  QL D GCK V++GHSERR +IGE D  + KK A   + GL  + CIGE
Sbjct:    6 VAGNWKMHGTRASVAELIEGLGKQVLPGSVDIAVMPASLFTNQVIEGLRATSIIVGAQDAAIQAEQGALTGEIASSQLADAGCKLVLVGHSERRQLIGEQDDVLNKKFAAIQASGLTPVLCIGE 129          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_ERWT9 (Triosephosphate isomerase OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=tpiA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.267e-16
Identity = 47/124 (37.90%), Postives = 70/124 (56.45%), Query Frame = 1
Query:  310 VGGNWKCNGTKESITKLVSDLN-DAKLEXXXXXXXXXXFVYIDQVKNSLTDR-IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            V GNWK NG K+ + +L++ L  +               +Y++Q K++++   + + AQN  V   GAFTGE+S + LKDIG +++++GHSERR    E D  I KK A     GL  + CIGE
Sbjct:    6 VMGNWKLNGNKQMVNELIAGLRTELSGVDGCGVAIAPPVMYLEQAKHAISGSPVALGAQNVDVNLSGAFTGEVSADMLKDIGAQYIIIGHSERRTWHAESDDAIAKKFAVLKQTGLIPVLCIGE 129          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPISL_HUMAN (Putative triosephosphate isomerase-like protein LOC286016 OS=Homo sapiens PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.267e-16
Identity = 51/131 (38.93%), Postives = 66/131 (50.38%), Query Frame = 1
Query:  286 MASSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQ 678
            MA S KFFVG NWK NG K+ + +L+   N A +             Y +  +  L  +I +A QN +    GAFTGEIS   +KD+G  WVV                   K A+AL+E LGVIACIGE+
Sbjct:    1 MAPSRKFFVGRNWKMNGRKKCLGELIGTQNAATVPADTKVICALATAYNELARQKLAPKIAVAPQNCYKVTNGAFTGEISPGMVKDLGVTWVV-------------------KVAHALAERLGVIACIGEK 112          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_KLEPN (Triosephosphate isomerase OS=Klebsiella pneumoniae GN=tpiA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.655e-16
Identity = 49/124 (39.52%), Postives = 68/124 (54.84%), Query Frame = 1
Query:  310 VGGNWKCNGTKESITKLVSDLN-DAKLEXXXXXXXXXXFVYIDQVKNSLT-DRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            V GNWK NG++  + +LV++L  +               +Y+D  K +     I + AQN  V   GAFTGE S E LKDIG +++++GHSERR    E D+ I KK A    +GL  + CIGE
Sbjct:    6 VMGNWKLNGSRHMVNELVANLRTELAGVSGCAVAIAPPEMYLDLAKRAAEGSHIHLGAQNVDVNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGE 129          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_HAES1 (Triosephosphate isomerase OS=Haemophilus somnus (strain 129Pt) GN=tpiA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.655e-16
Identity = 53/127 (41.73%), Postives = 67/127 (52.76%), Query Frame = 1
Query:  310 VGGNWKCNG----TKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDR-IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            V GNWK NG    TKE IT L  +LN                +Y+ + + +L    I +  QN  + K GAFTG+IS E LKD G K+V++GHSERR    E D+FI KK       GL  + CIGE
Sbjct:    7 VMGNWKLNGSKAFTKELITGLKDELNAVS---GCDVAIAPPVMYLAEAETALVSSDIALGTQNVDLNKQGAFTGDISTEMLKDFGVKYVIIGHSERRQYHHESDEFIAKKFGVLKDAGLVPVLCIGE 130          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_CLOBB (Triosephosphate isomerase OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=tpiA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.655e-16
Identity = 47/126 (37.30%), Postives = 66/126 (52.38%), Query Frame = 1
Query:  301 KFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLT-DRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            K  + GNWK N T +   K+V +L     +          FV +D VK +     I++AAQN    + GAFTGE++   L+ +G ++VVLGHSERR    E D+ I KK   A +  +  I C GE
Sbjct:    3 KAIIAGNWKMNKTVDEAVKVVEELKPLVKDATCDVVVCPTFVCLDAVKKATAGSNIKVAAQNMHFEESGAFTGEVAPGMLEAMGIEYVVLGHSERREYFNETDEAINKKVKAAFAHNITPIVCCGE 128          
The following BLAST results are available for this feature:
BLAST of FC876189 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 483
Match NameE-valueIdentityDescription
TPIS_YERP39.700e-1739.52Triosephosphate isomerase OS=Yersinia pseudotuberc... [more]
TPIS_PHOLL9.700e-1739.52Triosephosphate isomerase OS=Photorhabdus luminesc... [more]
TPIS_PELCD9.700e-1739.20Triosephosphate isomerase OS=Pelobacter carbinolic... [more]
TPIS_ENT389.700e-1739.52Triosephosphate isomerase OS=Enterobacter sp. (str... [more]
TPIS_PSE141.267e-1639.52Triosephosphate isomerase OS=Pseudomonas syringae ... [more]
TPIS_ERWT91.267e-1637.90Triosephosphate isomerase OS=Erwinia tasmaniensis ... [more]
TPISL_HUMAN1.267e-1638.93Putative triosephosphate isomerase-like protein LO... [more]
TPIS_KLEPN1.655e-1639.52Triosephosphate isomerase OS=Klebsiella pneumoniae... [more]
TPIS_HAES11.655e-1641.73Triosephosphate isomerase OS=Haemophilus somnus (s... [more]
TPIS_CLOBB1.655e-1637.30Triosephosphate isomerase OS=Clostridium botulinum... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32001D11EF DevOvary1 Citrus clementina cDNA clone C32001D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876189 ID=FC876189; Name=FC876189; organism=Citrus clementina; type=EST; length=678bp
TCGCCGGGGGGAAACCACAACGTGACCCTTCGTCCCACCCTCTCCACCAA
CCAAACACACATACACAAAGGCTGAGCAAGAGCAAGAGCAAGAGCCAAAG
CAGCTGAGATTATAATTTGACTTTCACTTTGACTTTTCACAATGGCGTCA
ATGGTCTCCACAAACTGCGCTCAATTCTCCGGCCTGCGCCGCTCATCGCC
CACACAGTCTTTTTCACAGCACGTCAACTCTCACCTCCGCCTCTTCTCTT
CTCGTAGACCTCGCCGCGGCAGCAGCGTTGTCGCCATGGCCAGCTCCAAC
AAGTTCTTTGTTGGGGGAAACTGGAAGTGTAATGGAACAAAGGAATCTAT
CACCAAGCTTGTTTCGGACCTGAACGATGCAAAGTTGGAGGCAGATGTTG
ATGTTGTGGTAGCGCCTCCCTTTGTTTACATTGATCAAGTGAAGAATTCA
TTAACAGATAGAATTGAGATAGCAGCTCAGAACTCTTGGGTCGGAAAAGG
TGGAGCATTTACAGGAGAAATCAGTGTGGAACAACTGAAAGATATTGGCT
GCAAGTGGGTTGTTCTGGGGCATTCTGAGCGCAGACATGTTATTGGTGAA
GATGATCAGTTTATAGGGAAGAAAGCTGCCTATGCCTTGAGCGAGGGACT
TGGTGTAATAGCTTGTATCGGGGAACAG
back to top