FC876189

Overview
NameFC876189
Unique NameFC876189
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_SALTY (Triosephosphate isomerase OS=Salmonella typhimurium GN=tpiA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.822e-16
Identity = 49/124 (39.52%), Postives = 68/124 (54.84%), Query Frame = 1 
Query:  310 VGGNWKCNGTKESITKLVSDLN-DAKLEXXXXXXXXXXFVYIDQVKNSLT-DRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            V GNWK NG++  + +LV++L  +               +YID  K +     I + AQN  +   GAFTGE S E LKDIG +++++GHSERR    E D+ I KK A    +GL  + CIGE
Sbjct:    6 VMGNWKLNGSRHMVNELVANLRKELTGVAGCDVAIAPPEMYIDLAKRAAAGSHIMLGAQNVDLNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGE 129
[Close]
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_SALTI (Triosephosphate isomerase OS=Salmonella typhi GN=tpiA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.822e-16
Identity = 49/124 (39.52%), Postives = 68/124 (54.84%), Query Frame = 1 
Query:  310 VGGNWKCNGTKESITKLVSDLN-DAKLEXXXXXXXXXXFVYIDQVKNSLT-DRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            V GNWK NG++  + +LV++L  +               +YID  K +     I + AQN  +   GAFTGE S E LKDIG +++++GHSERR    E D+ I KK A    +GL  + CIGE
Sbjct:    6 VMGNWKLNGSRHMVNELVANLRKELTGVAGCDVAIAPPEMYIDLAKRAAAGSHIMLGAQNVDLNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGE 129
[Close]
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_SALSV (Triosephosphate isomerase OS=Salmonella schwarzengrund (strain CVM19633) GN=tpiA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.822e-16
Identity = 49/124 (39.52%), Postives = 68/124 (54.84%), Query Frame = 1 
Query:  310 VGGNWKCNGTKESITKLVSDLN-DAKLEXXXXXXXXXXFVYIDQVKNSLT-DRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            V GNWK NG++  + +LV++L  +               +YID  K +     I + AQN  +   GAFTGE S E LKDIG +++++GHSERR    E D+ I KK A    +GL  + CIGE
Sbjct:    6 VMGNWKLNGSRHMVNELVANLRKELTGVAGCDVAIAPPEMYIDLAKRAAAGSHIMLGAQNVDLNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGE 129
[Close]
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_SALPK (Triosephosphate isomerase OS=Salmonella paratyphi A (strain AKU_12601) GN=tpiA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.822e-16
Identity = 49/124 (39.52%), Postives = 68/124 (54.84%), Query Frame = 1 
Query:  310 VGGNWKCNGTKESITKLVSDLN-DAKLEXXXXXXXXXXFVYIDQVKNSLT-DRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            V GNWK NG++  + +LV++L  +               +YID  K +     I + AQN  +   GAFTGE S E LKDIG +++++GHSERR    E D+ I KK A    +GL  + CIGE
Sbjct:    6 VMGNWKLNGSRHMVNELVANLRKELAGVAGCDVAIAPPEMYIDLAKRAAAGSHIMLGAQNVDLNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGE 129
[Close]
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_SALPB (Triosephosphate isomerase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=tpiA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.822e-16
Identity = 49/124 (39.52%), Postives = 68/124 (54.84%), Query Frame = 1 
Query:  310 VGGNWKCNGTKESITKLVSDLN-DAKLEXXXXXXXXXXFVYIDQVKNSLT-DRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            V GNWK NG++  + +LV++L  +               +YID  K +     I + AQN  +   GAFTGE S E LKDIG +++++GHSERR    E D+ I KK A    +GL  + CIGE
Sbjct:    6 VMGNWKLNGSRHMVNELVANLRKELAGVAGCDVAIAPPEMYIDLAKRAAAGSHIMLGAQNVDLNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGE 129
[Close]
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_SALPA (Triosephosphate isomerase OS=Salmonella paratyphi A GN=tpiA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.822e-16
Identity = 49/124 (39.52%), Postives = 68/124 (54.84%), Query Frame = 1 
Query:  310 VGGNWKCNGTKESITKLVSDLN-DAKLEXXXXXXXXXXFVYIDQVKNSLT-DRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            V GNWK NG++  + +LV++L  +               +YID  K +     I + AQN  +   GAFTGE S E LKDIG +++++GHSERR    E D+ I KK A    +GL  + CIGE
Sbjct:    6 VMGNWKLNGSRHMVNELVANLRKELAGVAGCDVAIAPPEMYIDLAKRAAAGSHIMLGAQNVDLNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGE 129
[Close]
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_SALNS (Triosephosphate isomerase OS=Salmonella newport (strain SL254) GN=tpiA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.822e-16
Identity = 49/124 (39.52%), Postives = 68/124 (54.84%), Query Frame = 1 
Query:  310 VGGNWKCNGTKESITKLVSDLN-DAKLEXXXXXXXXXXFVYIDQVKNSLT-DRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            V GNWK NG++  + +LV++L  +               +YID  K +     I + AQN  +   GAFTGE S E LKDIG +++++GHSERR    E D+ I KK A    +GL  + CIGE
Sbjct:    6 VMGNWKLNGSRHMVNELVANLRKELTGVAGCDVAIAPPEMYIDLAKRAAAGSHIMLGAQNVDLNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGE 129
[Close]
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_SALHS (Triosephosphate isomerase OS=Salmonella heidelberg (strain SL476) GN=tpiA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.822e-16
Identity = 49/124 (39.52%), Postives = 68/124 (54.84%), Query Frame = 1 
Query:  310 VGGNWKCNGTKESITKLVSDLN-DAKLEXXXXXXXXXXFVYIDQVKNSLT-DRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            V GNWK NG++  + +LV++L  +               +YID  K +     I + AQN  +   GAFTGE S E LKDIG +++++GHSERR    E D+ I KK A    +GL  + CIGE
Sbjct:    6 VMGNWKLNGSRHMVNELVANLRKELTGVAGCDVAIAPPEMYIDLAKRAAAGSHIMLGAQNVDLNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGE 129
[Close]
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_SALG2 (Triosephosphate isomerase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=tpiA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.822e-16
Identity = 49/124 (39.52%), Postives = 68/124 (54.84%), Query Frame = 1 
Query:  310 VGGNWKCNGTKESITKLVSDLN-DAKLEXXXXXXXXXXFVYIDQVKNSLT-DRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            V GNWK NG++  + +LV++L  +               +YID  K +     I + AQN  +   GAFTGE S E LKDIG +++++GHSERR    E D+ I KK A    +GL  + CIGE
Sbjct:    6 VMGNWKLNGSRHMVNELVANLRKELAGVAGCDVAIAPPEMYIDLAKRAAAGSHIMLGAQNVDLNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGE 129
[Close]
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_SALEP (Triosephosphate isomerase OS=Salmonella enteritidis PT4 (strain P125109) GN=tpiA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.822e-16
Identity = 49/124 (39.52%), Postives = 68/124 (54.84%), Query Frame = 1 
Query:  310 VGGNWKCNGTKESITKLVSDLN-DAKLEXXXXXXXXXXFVYIDQVKNSLT-DRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            V GNWK NG++  + +LV++L  +               +YID  K +     I + AQN  +   GAFTGE S E LKDIG +++++GHSERR    E D+ I KK A    +GL  + CIGE
Sbjct:    6 VMGNWKLNGSRHMVNELVANLRKELAGVAGCDVAIAPPEMYIDLAKRAAAGSHIMLGAQNVDLNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGE 129
The following BLAST results are available for this feature:
BLAST of FC876189 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 483
Match NameE-valueIdentityDescription
TPIS_SALTY2.822e-1639.52Triosephosphate isomerase OS=Salmonella typhimuriu... [more]
TPIS_SALTI2.822e-1639.52Triosephosphate isomerase OS=Salmonella typhi GN=t... [more]
TPIS_SALSV2.822e-1639.52Triosephosphate isomerase OS=Salmonella schwarzeng... [more]
TPIS_SALPK2.822e-1639.52Triosephosphate isomerase OS=Salmonella paratyphi ... [more]
TPIS_SALPB2.822e-1639.52Triosephosphate isomerase OS=Salmonella paratyphi ... [more]
TPIS_SALPA2.822e-1639.52Triosephosphate isomerase OS=Salmonella paratyphi ... [more]
TPIS_SALNS2.822e-1639.52Triosephosphate isomerase OS=Salmonella newport (s... [more]
TPIS_SALHS2.822e-1639.52Triosephosphate isomerase OS=Salmonella heidelberg... [more]
TPIS_SALG22.822e-1639.52Triosephosphate isomerase OS=Salmonella gallinarum... [more]
TPIS_SALEP2.822e-1639.52Triosephosphate isomerase OS=Salmonella enteritidi... [more]

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Properties
Property NameValue
Genbank descriptionC32001D11EF DevOvary1 Citrus clementina cDNA clone C32001D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876189 ID=FC876189; Name=FC876189; organism=Citrus clementina; type=EST; length=678bp
TCGCCGGGGGGAAACCACAACGTGACCCTTCGTCCCACCCTCTCCACCAA
CCAAACACACATACACAAAGGCTGAGCAAGAGCAAGAGCAAGAGCCAAAG
CAGCTGAGATTATAATTTGACTTTCACTTTGACTTTTCACAATGGCGTCA
ATGGTCTCCACAAACTGCGCTCAATTCTCCGGCCTGCGCCGCTCATCGCC
CACACAGTCTTTTTCACAGCACGTCAACTCTCACCTCCGCCTCTTCTCTT
CTCGTAGACCTCGCCGCGGCAGCAGCGTTGTCGCCATGGCCAGCTCCAAC
AAGTTCTTTGTTGGGGGAAACTGGAAGTGTAATGGAACAAAGGAATCTAT
CACCAAGCTTGTTTCGGACCTGAACGATGCAAAGTTGGAGGCAGATGTTG
ATGTTGTGGTAGCGCCTCCCTTTGTTTACATTGATCAAGTGAAGAATTCA
TTAACAGATAGAATTGAGATAGCAGCTCAGAACTCTTGGGTCGGAAAAGG
TGGAGCATTTACAGGAGAAATCAGTGTGGAACAACTGAAAGATATTGGCT
GCAAGTGGGTTGTTCTGGGGCATTCTGAGCGCAGACATGTTATTGGTGAA
GATGATCAGTTTATAGGGAAGAAAGCTGCCTATGCCTTGAGCGAGGGACT
TGGTGTAATAGCTTGTATCGGGGAACAG
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