FC876189

Overview
NameFC876189
Unique NameFC876189
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_SALDC (Triosephosphate isomerase OS=Salmonella dublin (strain CT_02021853) GN=tpiA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.822e-16
Identity = 49/124 (39.52%), Postives = 68/124 (54.84%), Query Frame = 1
Query:  310 VGGNWKCNGTKESITKLVSDLN-DAKLEXXXXXXXXXXFVYIDQVKNSLT-DRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            V GNWK NG++  + +LV++L  +               +YID  K +     I + AQN  +   GAFTGE S E LKDIG +++++GHSERR    E D+ I KK A    +GL  + CIGE
Sbjct:    6 VMGNWKLNGSRHMVNELVANLRKELAGVAGCDVAIAPPEMYIDLAKRAAAGSHIMLGAQNVDLNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGE 129          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_SALCH (Triosephosphate isomerase OS=Salmonella choleraesuis GN=tpiA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.822e-16
Identity = 49/124 (39.52%), Postives = 68/124 (54.84%), Query Frame = 1
Query:  310 VGGNWKCNGTKESITKLVSDLN-DAKLEXXXXXXXXXXFVYIDQVKNSLT-DRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            V GNWK NG++  + +LV++L  +               +YID  K +     I + AQN  +   GAFTGE S E LKDIG +++++GHSERR    E D+ I KK A    +GL  + CIGE
Sbjct:    6 VMGNWKLNGSRHMVNELVANLRKELTGVAGCDVAIAPPEMYIDLAKRAAAGSHIMLGAQNVDLNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGE 129          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_SALA4 (Triosephosphate isomerase OS=Salmonella agona (strain SL483) GN=tpiA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.822e-16
Identity = 49/124 (39.52%), Postives = 68/124 (54.84%), Query Frame = 1
Query:  310 VGGNWKCNGTKESITKLVSDLN-DAKLEXXXXXXXXXXFVYIDQVKNSLT-DRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            V GNWK NG++  + +LV++L  +               +YID  K +     I + AQN  +   GAFTGE S E LKDIG +++++GHSERR    E D+ I KK A    +GL  + CIGE
Sbjct:    6 VMGNWKLNGSRHMVNELVANLRKELTGVAGCDVAIAPPEMYIDLAKRAAAGSHIMLGAQNVDLNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGE 129          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_HAES2 (Triosephosphate isomerase OS=Haemophilus somnus (strain 2336) GN=tpiA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.822e-16
Identity = 53/127 (41.73%), Postives = 67/127 (52.76%), Query Frame = 1
Query:  310 VGGNWKCNG----TKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDR-IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            V GNWK NG    TKE IT L  +LN                +Y+ + + +L    I +  QN  + K GAFTG+IS E LKD G K+V++GHSERR    E D+FI KK       GL  + CIGE
Sbjct:    7 VMGNWKLNGSKAFTKELITGLKDELNAVS---GCDVAIAPPVMYLAEAEAALVSSDIALGTQNVDLNKQGAFTGDISTEMLKDFGVKYVIIGHSERRQYHHESDEFIAKKFGVLKDAGLVPVLCIGE 130          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_PSEU2 (Triosephosphate isomerase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=tpiA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.686e-16
Identity = 47/124 (37.90%), Postives = 70/124 (56.45%), Query Frame = 1
Query:  310 VGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSL-TDRIEIAAQNSWV-GKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            V GNWK +GT+ S+ +L+  L    L            ++  QV + L    I + AQ++ +  + GA TGE++  QL D GCK V++GHSERR +IGE D  + KK A   ++GL  + C+GE
Sbjct:    6 VAGNWKMHGTRASVAELIEGLCKQSLPGSVDIAVMPASLFTCQVVDGLKATSIIVGAQDAAIQAEQGALTGEVASSQLADAGCKLVLVGHSERRQLIGEQDDVLNKKFAAIQAKGLTPVLCVGE 129          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_MYCMS (Triosephosphate isomerase OS=Mycoplasma mycoides subsp. mycoides SC GN=tpiA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.686e-16
Identity = 47/125 (37.60%), Postives = 67/125 (53.60%), Query Frame = 1
Query:  301 KFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            K  + GNWK NGT ES+T  ++ + D K++             + Q    L   ++IAAQN      GA+TGEIS   LK++G ++V++GHSERR +  E D  + KKA   L   +  I C GE
Sbjct:    3 KKVIFGNWKMNGTNESLTDFLNQV-DNKIDSSKIIAGLAVPYVMLQTGLKLAKNVKIAAQNVHYKDKGAYTGEISTTMLKEVGVEYVIIGHSERREMFNETDLDVNKKAKVLLENNITPIICCGE 126          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_ALKMQ (Triosephosphate isomerase OS=Alkaliphilus metalliredigens (strain QYMF) GN=tpiA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.686e-16
Identity = 44/126 (34.92%), Postives = 66/126 (52.38%), Query Frame = 1
Query:  301 KFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSL-TDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            K  + GNWK N T     + ++++ D              F  + + K +L   +I++ AQN      GAFTGEIS E LK++G  ++++GHSERR    E D+ + KK   AL + L  I C+GE
Sbjct:    3 KPIIAGNWKMNKTVAETLQFINEIRDQAETTDVEVVLCCPFTALSEAKKALGASKIKLGAQNMHWEDNGAFTGEISAEMLKELGVDYILIGHSERRQYFNETDETVNKKIKKALEQKLMPILCVGE 128          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_WOLTR (Triosephosphate isomerase OS=Wolbachia sp. subsp. Brugia malayi (strain TRS) GN=tpiA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.814e-16
Identity = 48/124 (38.71%), Postives = 62/124 (50.00%), Query Frame = 1
Query:  304 FFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            F +  NWK NGT+      +  LND   E          F  +      L   I I AQN    K G++TGEIS E LK++GC +V+LGHSER H   E +  I  K+  A+  GL  I C+GE
Sbjct:    3 FLIVANWKMNGTRSLFVNFIGKLNDKSNEITSKLVICPPFTSLPG-NIELNSNISIGAQNCHYKKSGSYTGEISAEMLKELGCTYVILGHSERTH---ETNGEIKLKSETAIESGLHPIICVGE 122          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_FRATN (Triosephosphate isomerase OS=Francisella tularensis subsp. novicida (strain U112) GN=tpiA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.814e-16
Identity = 43/121 (35.54%), Postives = 67/121 (55.37%), Query Frame = 1
Query:  316 GNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXF-VYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            GNWK NG   SI +L S ++ A+ +            VY+ +V + L +++ +  QN      GA+TGEIS   L+DIGC ++++GHSERR +  E D+ + KK    +   +  + CIGE
Sbjct:    7 GNWKMNGNSTSIKELCSGISQAQYDTSRVAIAVFPSSVYVKEVISQLPEKVGVGLQNITFYDDGAYTGEISARMLEDIGCDYLLIGHSERRSLFAESDEDVFKKLNKIIDTTITPVVCIGE 127          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_CLOB8 (Triosephosphate isomerase OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=tpiA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.814e-16
Identity = 46/126 (36.51%), Postives = 65/126 (51.59%), Query Frame = 1
Query:  301 KFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLT-DRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            K  + GNWK N T +   K+V +L     +          FV +D VK ++    I++AAQN    + GAFTGE++   L+ +G  +VVLGHSERR    E D+ + KK   A    +  I C GE
Sbjct:    3 KAIIAGNWKMNKTIDEAVKMVEELKPLVKDATCDVVVCPTFVCLDAVKKAVAGSNIKVAAQNMHFEESGAFTGEVAPGMLEAMGIDYVVLGHSERREYFNETDEALNKKVKKAFEHNITPILCCGE 128          
The following BLAST results are available for this feature:
BLAST of FC876189 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 483
Match NameE-valueIdentityDescription
TPIS_SALDC2.822e-1639.52Triosephosphate isomerase OS=Salmonella dublin (st... [more]
TPIS_SALCH2.822e-1639.52Triosephosphate isomerase OS=Salmonella choleraesu... [more]
TPIS_SALA42.822e-1639.52Triosephosphate isomerase OS=Salmonella agona (str... [more]
TPIS_HAES22.822e-1641.73Triosephosphate isomerase OS=Haemophilus somnus (s... [more]
TPIS_PSEU23.686e-1637.90Triosephosphate isomerase OS=Pseudomonas syringae ... [more]
TPIS_MYCMS3.686e-1637.60Triosephosphate isomerase OS=Mycoplasma mycoides s... [more]
TPIS_ALKMQ3.686e-1634.92Triosephosphate isomerase OS=Alkaliphilus metallir... [more]
TPIS_WOLTR4.814e-1638.71Triosephosphate isomerase OS=Wolbachia sp. subsp. ... [more]
TPIS_FRATN4.814e-1635.54Triosephosphate isomerase OS=Francisella tularensi... [more]
TPIS_CLOB84.814e-1636.51Triosephosphate isomerase OS=Clostridium beijerinc... [more]

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Properties
Property NameValue
Genbank descriptionC32001D11EF DevOvary1 Citrus clementina cDNA clone C32001D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876189 ID=FC876189; Name=FC876189; organism=Citrus clementina; type=EST; length=678bp
TCGCCGGGGGGAAACCACAACGTGACCCTTCGTCCCACCCTCTCCACCAA
CCAAACACACATACACAAAGGCTGAGCAAGAGCAAGAGCAAGAGCCAAAG
CAGCTGAGATTATAATTTGACTTTCACTTTGACTTTTCACAATGGCGTCA
ATGGTCTCCACAAACTGCGCTCAATTCTCCGGCCTGCGCCGCTCATCGCC
CACACAGTCTTTTTCACAGCACGTCAACTCTCACCTCCGCCTCTTCTCTT
CTCGTAGACCTCGCCGCGGCAGCAGCGTTGTCGCCATGGCCAGCTCCAAC
AAGTTCTTTGTTGGGGGAAACTGGAAGTGTAATGGAACAAAGGAATCTAT
CACCAAGCTTGTTTCGGACCTGAACGATGCAAAGTTGGAGGCAGATGTTG
ATGTTGTGGTAGCGCCTCCCTTTGTTTACATTGATCAAGTGAAGAATTCA
TTAACAGATAGAATTGAGATAGCAGCTCAGAACTCTTGGGTCGGAAAAGG
TGGAGCATTTACAGGAGAAATCAGTGTGGAACAACTGAAAGATATTGGCT
GCAAGTGGGTTGTTCTGGGGCATTCTGAGCGCAGACATGTTATTGGTGAA
GATGATCAGTTTATAGGGAAGAAAGCTGCCTATGCCTTGAGCGAGGGACT
TGGTGTAATAGCTTGTATCGGGGAACAG
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