FC876189

Overview
NameFC876189
Unique NameFC876189
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10307 contig Ccv1_Contig10307:1..678. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_PETHY (Triosephosphate isomerase, cytosolic OS=Petunia hybrida GN=TPIP1 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.141e-33
Identity = 67/127 (52.76%), Postives = 87/127 (68.50%), Query Frame = 1
Query:  301 KFFVGGNWKCNGTKESITKLVSDLN--DAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            KFFVGGNWKCNGT E + K+++ LN  D   +          +V++  VKN L     +AAQN WV KGGAFTGE+S E L ++   WV+LGHSERR ++GE ++F+G K AYALS+GL VIAC+GE
Sbjct:    4 KFFVGGNWKCNGTAEEVKKILATLNAADVPSQDVVEVVVSPPYVFLPLVKNELRPDFHVAAQNCWVKKGGAFTGEVSAEMLVNLSIPWVILGHSERRALLGESNEFVGDKVAYALSQGLKVIACVGE 130          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_ORYSJ (Triosephosphate isomerase, cytosolic OS=Oryza sativa subsp. japonica GN=TPI PE=1 SV=3)

HSP 1 Score: 143.28 bits (360), Expect = 1.141e-33
Identity = 66/127 (51.97%), Postives = 89/127 (70.08%), Query Frame = 1
Query:  301 KFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXX--FVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            KFFVGGNWKCNGT + + K+V  LN+ ++             +V++  VK+ L   I++AAQN WV KGGAFTGE+S E L ++   WV+LGHSERR ++GE ++F+G K AYALS+GL VIAC+GE
Sbjct:    4 KFFVGGNWKCNGTTDQVDKIVKILNEGQIASTDVVEVVVSPPYVFLPVVKSQLRPEIQVAAQNCWVKKGGAFTGEVSAEMLVNLSIPWVILGHSERRSLLGESNEFVGDKVAYALSQGLKVIACVGE 130          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_HORVU (Triosephosphate isomerase, cytosolic OS=Hordeum vulgare PE=1 SV=3)

HSP 1 Score: 141.354 bits (355), Expect = 4.334e-33
Identity = 66/127 (51.97%), Postives = 87/127 (68.50%), Query Frame = 1
Query:  301 KFFVGGNWKCNGTKESITKLVSDLNDAKL--EXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            KFFVGGNWKCNGT E +  +V  LN  ++             +V++  VK  L   I++AAQN WV KGGAFTGE+S E L ++G  WV+LGHSERR ++GE  +F+G+K AYAL++GL VIAC+GE
Sbjct:    4 KFFVGGNWKCNGTVEQVEAIVQTLNAGQIVSPDVVEVVVSPPYVFLPIVKAKLRPEIQVAAQNCWVKKGGAFTGEVSAEMLANLGVPWVILGHSERRSLLGESSEFVGEKVAYALAQGLKVIACVGE 130          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_MOUSE (Triosephosphate isomerase OS=Mus musculus GN=Tpi1 PE=1 SV=3)

HSP 1 Score: 140.969 bits (354), Expect = 5.660e-33
Identity = 69/131 (52.67%), Postives = 87/131 (66.41%), Query Frame = 1
Query:  286 MASSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQ 678
            MA + KFFVGGNWK NG K+ + +L+  LN A +             YID  +  L  +I +AAQN +    GAFTGEIS   +KD+G  WVVLGHSERRHV GE D+ IG+K ++AL+EGLGVIACIGE+
Sbjct:    1 MAPTRKFFVGGNWKMNGRKKCLGELICTLNAANVPAGTEVVCAPPTAYIDFARQKLDPKIAVAAQNCYKVTNGAFTGEISPGMIKDLGATWVVLGHSERRHVFGESDELIGQKVSHALAEGLGVIACIGEK 131          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_ARATH (Triosephosphate isomerase, cytosolic OS=Arabidopsis thaliana GN=CTIMC PE=1 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 5.660e-33
Identity = 65/129 (50.39%), Postives = 90/129 (69.77%), Query Frame = 1
Query:  295 SNKFFVGGNWKCNGTKESITKLVSDLNDAKL--EXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            + KFFVGGNWKCNGT E + K+V+ LN+A++  +          +V++  VK++L     +AAQN WV KGGAFTGE+S E L ++   WV+LGHSERR ++ E  +F+G K AYAL++GL VIAC+GE
Sbjct:    2 ARKFFVGGNWKCNGTAEEVKKIVNTLNEAQVPSQDVVEVVVSPPYVFLPLVKSTLRSDFFVAAQNCWVKKGGAFTGEVSAEMLVNLDIPWVILGHSERRAILNESSEFVGDKVAYALAQGLKVIACVGE 130          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPISA_DANRE (Triosephosphate isomerase A OS=Danio rerio GN=tpi1a PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.660e-33
Identity = 69/129 (53.49%), Postives = 84/129 (65.12%), Query Frame = 1
Query:  292 SSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQ 678
            SS KFFVGGNWK NG KES+ +L+  LN A L            +Y+D  ++ L  RI +AAQN +    GAFTGEIS   +KD G  WV+LGHSERRHV GE D+ IG+K A+ L   LGVIACIGE+
Sbjct:    2 SSRKFFVGGNWKMNGDKESLGELIMTLNTASLNDETDVVCGAPSIYLDYARSKLDQRIGVAAQNCYKVPKGAFTGEISPAMIKDCGIDWVILGHSERRHVFGESDELIGQKVAHCLESDLGVIACIGEK 130          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_XENTR (Triosephosphate isomerase OS=Xenopus tropicalis GN=tpi1 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 7.393e-33
Identity = 66/129 (51.16%), Postives = 86/129 (66.67%), Query Frame = 1
Query:  292 SSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQ 678
            SS KFFVGGNWK NG K+S+T+L++ LN  K+            +Y+D  +  L  +  ++AQN +    GAFTGEIS   +KD G  WV+LGHSERRHV GE D+ IG+K A+ALSE +GVI CIGE+
Sbjct:    2 SSRKFFVGGNWKMNGDKKSLTELINTLNSGKISADTEVVCGAPTIYLDFARQKLDAKFAVSAQNCYKVAKGAFTGEISPAMIKDCGATWVILGHSERRHVFGESDELIGQKVAHALSENVGVIGCIGEK 130          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_XENLA (Triosephosphate isomerase OS=Xenopus laevis GN=tpi1 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 9.655e-33
Identity = 67/129 (51.94%), Postives = 87/129 (67.44%), Query Frame = 1
Query:  292 SSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQ 678
            S  KFFVGGNWK NG K+S+ +L++ LN  K+            +Y+D  +  L  +I ++AQN +    GAFTGEIS   +KD G  WV+LGHSERRHV GE D+ IG+K A+ALSEG+GVIACIGE+
Sbjct:    2 SPRKFFVGGNWKMNGDKKSLGELINTLNSGKMNADTEVVCGAPAIYLDFARQKLDAKIALSAQNCYKVAKGAFTGEISPAMIKDCGATWVILGHSERRHVFGECDELIGQKVAHALSEGIGVIACIGEK 130          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_SECCE (Triosephosphate isomerase, cytosolic OS=Secale cereale PE=2 SV=3)

HSP 1 Score: 139.043 bits (349), Expect = 2.151e-32
Identity = 64/127 (50.39%), Postives = 87/127 (68.50%), Query Frame = 1
Query:  301 KFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXX--FVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            KFFVGGNWKCNGT   +  +V+ LN  ++             +V++  VK+ L   I++AAQN WV KGGAFTGE+S E L ++G  WV+LGHSERR ++ E  +F+G+K AYAL++GL VIAC+GE
Sbjct:    4 KFFVGGNWKCNGTVSQVETIVNTLNAGQIASPDVVEVVVSPPYVFLPTVKDKLRPEIQVAAQNCWVKKGGAFTGEVSAEMLVNLGIPWVILGHSERRSLLAESSEFVGEKVAYALAQGLKVIACVGE 130          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_ORYLA (Triosephosphate isomerase OS=Oryzias latipes GN=tpi1 PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.151e-32
Identity = 67/129 (51.94%), Postives = 85/129 (65.89%), Query Frame = 1
Query:  292 SSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQ 678
            +  +FFVGGNWK NG KES+ +L+S LN A L            +Y+D  ++ L  RI +AAQN +    GAFTGEIS   +KD G  WV+LGHSERRHV GE+D+ IG+K A+AL   L VIACIGE+
Sbjct:    2 AQRRFFVGGNWKMNGNKESLEELMSTLNTASLHEDTEVVCAAPSIYLDFARSGLDSRISVAAQNCYKVAKGAFTGEISPAMIKDCGADWVILGHSERRHVFGENDELIGQKVAHALESDLSVIACIGEK 130          
The following BLAST results are available for this feature:
BLAST of FC876189 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 483
Match NameE-valueIdentityDescription
TPIS_PETHY1.141e-3352.76Triosephosphate isomerase, cytosolic OS=Petunia hy... [more]
TPIS_ORYSJ1.141e-3351.97Triosephosphate isomerase, cytosolic OS=Oryza sati... [more]
TPIS_HORVU4.334e-3351.97Triosephosphate isomerase, cytosolic OS=Hordeum vu... [more]
TPIS_MOUSE5.660e-3352.67Triosephosphate isomerase OS=Mus musculus GN=Tpi1 ... [more]
TPIS_ARATH5.660e-3350.39Triosephosphate isomerase, cytosolic OS=Arabidopsi... [more]
TPISA_DANRE5.660e-3353.49Triosephosphate isomerase A OS=Danio rerio GN=tpi1... [more]
TPIS_XENTR7.393e-3351.16Triosephosphate isomerase OS=Xenopus tropicalis GN... [more]
TPIS_XENLA9.655e-3351.94Triosephosphate isomerase OS=Xenopus laevis GN=tpi... [more]
TPIS_SECCE2.151e-3250.39Triosephosphate isomerase, cytosolic OS=Secale cer... [more]
TPIS_ORYLA2.151e-3251.94Triosephosphate isomerase OS=Oryzias latipes GN=tp... [more]

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Properties
Property NameValue
Genbank descriptionC32001D11EF DevOvary1 Citrus clementina cDNA clone C32001D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876189 ID=FC876189; Name=FC876189; organism=Citrus clementina; type=EST; length=678bp
TCGCCGGGGGGAAACCACAACGTGACCCTTCGTCCCACCCTCTCCACCAA
CCAAACACACATACACAAAGGCTGAGCAAGAGCAAGAGCAAGAGCCAAAG
CAGCTGAGATTATAATTTGACTTTCACTTTGACTTTTCACAATGGCGTCA
ATGGTCTCCACAAACTGCGCTCAATTCTCCGGCCTGCGCCGCTCATCGCC
CACACAGTCTTTTTCACAGCACGTCAACTCTCACCTCCGCCTCTTCTCTT
CTCGTAGACCTCGCCGCGGCAGCAGCGTTGTCGCCATGGCCAGCTCCAAC
AAGTTCTTTGTTGGGGGAAACTGGAAGTGTAATGGAACAAAGGAATCTAT
CACCAAGCTTGTTTCGGACCTGAACGATGCAAAGTTGGAGGCAGATGTTG
ATGTTGTGGTAGCGCCTCCCTTTGTTTACATTGATCAAGTGAAGAATTCA
TTAACAGATAGAATTGAGATAGCAGCTCAGAACTCTTGGGTCGGAAAAGG
TGGAGCATTTACAGGAGAAATCAGTGTGGAACAACTGAAAGATATTGGCT
GCAAGTGGGTTGTTCTGGGGCATTCTGAGCGCAGACATGTTATTGGTGAA
GATGATCAGTTTATAGGGAAGAAAGCTGCCTATGCCTTGAGCGAGGGACT
TGGTGTAATAGCTTGTATCGGGGAACAG
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