FC876189

Overview
NameFC876189
Unique NameFC876189
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10307 contig Ccv1_Contig10307:1..678. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_LATCH (Triosephosphate isomerase OS=Latimeria chalumnae PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.106e-31
Identity = 65/126 (51.59%), Postives = 84/126 (66.67%), Query Frame = 1
Query:  301 KFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQ 678
            KFFVGGNWK NG K+S+ +L+  LN AK+             Y+D  +  +  +  +AAQN +    GAFTGEIS   +KD G  WV+LGHSERRHV GE D+ IG+K ++ALSEGLGV+ACIGE+
Sbjct:    4 KFFVGGNWKMNGDKKSLGELIQTLNAAKVPFTGEIVCAPPEAYLDFARLKVDPKFGVAAQNCYKVSKGAFTGEISPAMIKDCGVTWVILGHSERRHVFGESDELIGQKVSHALSEGLGVVACIGEK 129          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_SCHMA (Triosephosphate isomerase OS=Schistosoma mansoni GN=TPI PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.057e-31
Identity = 63/130 (48.46%), Postives = 87/130 (66.92%), Query Frame = 1
Query:  286 MASSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            M+ S KFFVGGNWK NG+++   KL+  L++A  +           V++ +++ SL   I +AAQN +    GAFTGEIS   ++DIGC WV+LGHSERR++ GE D+ I +K  +AL+EGL VIACIGE
Sbjct:    1 MSGSRKFFVGGNWKMNGSRDDNDKLLKLLSEAHFDDNTEVLIAPPSVFLHEIRKSLKKEIHVAAQNCYKVSKGAFTGEISPAMIRDIGCDWVILGHSERRNIFGESDELIAEKVQHALAEGLSVIACIGE 130          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_SCHJA (Triosephosphate isomerase OS=Schistosoma japonicum GN=TPI PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 9.037e-31
Identity = 62/130 (47.69%), Postives = 84/130 (64.62%), Query Frame = 1
Query:  286 MASSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            M+ S KFFVGGNWK NG++     L+  L++A             FVY+++V+ SL   I +AAQN +    GAFTGEIS   +KD+GC WV+LGHSERR +  E D+ + +K  +AL+EGL V+ACIGE
Sbjct:    1 MSGSRKFFVGGNWKMNGSRADNKVLIHSLSEAHFCGDTEILIAAPFVYLNEVRQSLAKEIHVAAQNCYKVPKGAFTGEISPSMIKDVGCDWVILGHSERRSIFNESDELVAEKVQHALAEGLSVVACIGE 130          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_BOMMO (Triosephosphate isomerase OS=Bombyx mori GN=Tpi PE=1 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 2.629e-30
Identity = 61/125 (48.80%), Postives = 79/125 (63.20%), Query Frame = 1
Query:  301 KFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            KF VGGNWK NG K  I ++V++L    L+           +Y+  VK  + D +E+AAQN W    GAFTGEIS   +KD+G  WV+LGHSERR + GE D+ + +K A+AL  GL VIACIGE
Sbjct:    4 KFVVGGNWKMNGDKNQINEIVNNLKKGPLDPNVEVIVGVPAIYLSYVKTIIPDNVEVAAQNCWKSPKGAFTGEISPAMIKDVGVNWVILGHSERRTIFGEKDELVAEKVAHALESGLKVIACIGE 128          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_ZYGBA (Triosephosphate isomerase OS=Zygosaccharomyces bailii GN=TPI1 PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 7.650e-30
Identity = 64/125 (51.20%), Postives = 86/125 (68.80%), Query Frame = 1
Query:  304 FFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLT-DRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            FFVGGN+K NGTK SI ++V  LN+AKL+            Y+D   + +   ++ + AQN+++   GAFTGE SV+Q+KD+G KWV+LGHSERR    EDDQ I +K A+ALS+G+GVI CIGE
Sbjct:    5 FFVGGNFKLNGTKSSIKEIVERLNNAKLDPKVEVVLCPPAPYLDYTVSLVKKSQVSVGAQNAYLKASGAFTGENSVDQIKDVGAKWVILGHSERRQYFREDDQLIAEKTAFALSQGVGVILCIGE 129          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_NEUCR (Triosephosphate isomerase OS=Neurospora crassa GN=tpi-1 PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.458e-29
Identity = 63/128 (49.22%), Postives = 85/128 (66.41%), Query Frame = 1
Query:  295 SNKFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTD-RIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            + KFFVGGN+K NGT++ +  +V +LN+A+L+           +Y+D VK +L    +E+AAQN +    GAFTGEIS  QL D+G KWV+LGHSERR+ +GE D+FI  K  YAL  G+ VI C GE
Sbjct:    2 ARKFFVGGNFKMNGTRKDLKAIVDNLNNAQLDPNAEVVIAPPALYLDFVKQNLQKPNVEVAAQNVFNKPNGAFTGEISATQLLDLGVKWVILGHSERRNELGESDEFIASKTKYALDNGISVIWCCGE 129          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_DROYA (Triosephosphate isomerase OS=Drosophila yakuba GN=Tpi PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.595e-27
Identity = 62/127 (48.82%), Postives = 80/127 (62.99%), Query Frame = 1
Query:  295 SNKFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            S KF VGGNWK NG ++SI ++   L+ A L+           +Y+   +N L   + +A QN++    GAFTGEIS   LKDIG  WV+LGHSERR + GE D  I +KA +AL+EGL VIACIGE
Sbjct:    2 SRKFCVGGNWKMNGDQKSIAEIAKTLSSAALDPNTEVVIGCPAIYLMYARNLLPCELGLAGQNAYKVAKGAFTGEISPAMLKDIGADWVILGHSERRAIFGESDALIAEKAEHALAEGLKVIACIGE 128          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_DROSI (Triosephosphate isomerase OS=Drosophila simulans GN=Tpi PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.595e-27
Identity = 62/127 (48.82%), Postives = 80/127 (62.99%), Query Frame = 1
Query:  295 SNKFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            S KF VGGNWK NG ++SI ++   L+ A L+           +Y+   +N L   + +A QN++    GAFTGEIS   LKDIG  WV+LGHSERR + GE D  I +KA +AL+EGL VIACIGE
Sbjct:    2 SRKFCVGGNWKMNGDQKSIAEIAKTLSSAALDPNTEVVIGCPAIYLMYARNLLPCELGLAGQNAYKVAKGAFTGEISPAMLKDIGADWVILGHSERRAIFGESDALIAEKAEHALAEGLKVIACIGE 128          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_DROME (Triosephosphate isomerase OS=Drosophila melanogaster GN=Tpi PE=1 SV=3)

HSP 1 Score: 122.865 bits (307), Expect = 1.595e-27
Identity = 62/127 (48.82%), Postives = 80/127 (62.99%), Query Frame = 1
Query:  295 SNKFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            S KF VGGNWK NG ++SI ++   L+ A L+           +Y+   +N L   + +A QN++    GAFTGEIS   LKDIG  WV+LGHSERR + GE D  I +KA +AL+EGL VIACIGE
Sbjct:    2 SRKFCVGGNWKMNGDQKSIAEIAKTLSSAALDPNTEVVIGCPAIYLMYARNLLPCELGLAGQNAYKVAKGAFTGEISPAMLKDIGADWVILGHSERRAIFGESDALIAEKAEHALAEGLKVIACIGE 128          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_YEAST (Triosephosphate isomerase OS=Saccharomyces cerevisiae GN=TPI1 PE=1 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 4.641e-27
Identity = 60/125 (48.00%), Postives = 81/125 (64.80%), Query Frame = 1
Query:  304 FFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYID-QVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            FFVGGN+K NG+K+SI ++V  LN A +             Y+D  V      ++ + AQN+++   GAFTGE SV+Q+KD+G KWV+LGHSERR    EDD+FI  K  +AL +G+GVI CIGE
Sbjct:    5 FFVGGNFKLNGSKQSIKEIVERLNTASIPENVEVVICPPATYLDYSVSLVKKPQVTVGAQNAYLKASGAFTGENSVDQIKDVGAKWVILGHSERRSYFHEDDKFIADKTKFALGQGVGVILCIGE 129          
The following BLAST results are available for this feature:
BLAST of FC876189 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 483
Match NameE-valueIdentityDescription
TPIS_LATCH3.106e-3151.59Triosephosphate isomerase OS=Latimeria chalumnae P... [more]
TPIS_SCHMA4.057e-3148.46Triosephosphate isomerase OS=Schistosoma mansoni G... [more]
TPIS_SCHJA9.037e-3147.69Triosephosphate isomerase OS=Schistosoma japonicum... [more]
TPIS_BOMMO2.629e-3048.80Triosephosphate isomerase OS=Bombyx mori GN=Tpi PE... [more]
TPIS_ZYGBA7.650e-3051.20Triosephosphate isomerase OS=Zygosaccharomyces bai... [more]
TPIS_NEUCR8.458e-2949.22Triosephosphate isomerase OS=Neurospora crassa GN=... [more]
TPIS_DROYA1.595e-2748.82Triosephosphate isomerase OS=Drosophila yakuba GN=... [more]
TPIS_DROSI1.595e-2748.82Triosephosphate isomerase OS=Drosophila simulans G... [more]
TPIS_DROME1.595e-2748.82Triosephosphate isomerase OS=Drosophila melanogast... [more]
TPIS_YEAST4.641e-2748.00Triosephosphate isomerase OS=Saccharomyces cerevis... [more]

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Properties
Property NameValue
Genbank descriptionC32001D11EF DevOvary1 Citrus clementina cDNA clone C32001D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876189 ID=FC876189; Name=FC876189; organism=Citrus clementina; type=EST; length=678bp
TCGCCGGGGGGAAACCACAACGTGACCCTTCGTCCCACCCTCTCCACCAA
CCAAACACACATACACAAAGGCTGAGCAAGAGCAAGAGCAAGAGCCAAAG
CAGCTGAGATTATAATTTGACTTTCACTTTGACTTTTCACAATGGCGTCA
ATGGTCTCCACAAACTGCGCTCAATTCTCCGGCCTGCGCCGCTCATCGCC
CACACAGTCTTTTTCACAGCACGTCAACTCTCACCTCCGCCTCTTCTCTT
CTCGTAGACCTCGCCGCGGCAGCAGCGTTGTCGCCATGGCCAGCTCCAAC
AAGTTCTTTGTTGGGGGAAACTGGAAGTGTAATGGAACAAAGGAATCTAT
CACCAAGCTTGTTTCGGACCTGAACGATGCAAAGTTGGAGGCAGATGTTG
ATGTTGTGGTAGCGCCTCCCTTTGTTTACATTGATCAAGTGAAGAATTCA
TTAACAGATAGAATTGAGATAGCAGCTCAGAACTCTTGGGTCGGAAAAGG
TGGAGCATTTACAGGAGAAATCAGTGTGGAACAACTGAAAGATATTGGCT
GCAAGTGGGTTGTTCTGGGGCATTCTGAGCGCAGACATGTTATTGGTGAA
GATGATCAGTTTATAGGGAAGAAAGCTGCCTATGCCTTGAGCGAGGGACT
TGGTGTAATAGCTTGTATCGGGGAACAG
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