FC876189

Overview
NameFC876189
Unique NameFC876189
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_COREF (Triosephosphate isomerase OS=Corynebacterium efficiens GN=tpiA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.498e-13
Identity = 44/133 (33.08%), Postives = 65/133 (48.87%), Query Frame = 1
Query:  295 SNKFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLT----DRIEIA--AQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            + K  + GNWK N   +     V  L  A  +           V    +++  T    D+++I   AQ+    + GA+TGE+S   L  + C WVV+GHSERR    E D+ +  KA  ALS+G+  I C+GE
Sbjct:    5 ARKPLIAGNWKMNLDHQQAIGTVQKLAFALHKDYYEKVDVAVIVPFTDLRSVQTLVEGDKLQITYGAQDVSQHESGAYTGEVSASMLAKLNCSWVVVGHSERREYHNETDELVAAKAKAALSKGISPIVCVGE 137          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_BACME (Triosephosphate isomerase OS=Bacillus megaterium GN=tpiA PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.498e-13
Identity = 44/128 (34.38%), Postives = 64/128 (50.00%), Query Frame = 1
Query:  301 KFFVGGNWKCNGTKESITKLVSDLNDA-KLEXXXXXXXXXXFVYIDQVKNSL--TDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            K  + GNWK N      T  V ++  A               +++D++  +   TD ++I AQN    + GAFTGE+S   L D+G  +V+LGHSERR +  E D+ + +K   A   GL  I C GE
Sbjct:    3 KPIIAGNWKMNKVLSEATSFVEEVKGAVPSPESVDSVVCAPALFLDRLVEATKGTD-LKIGAQNMHFEENGAFTGEVSPVALADLGVNYVILGHSERREMFAETDETVNQKTIAAFKHGLTPIVCCGE 129          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_MYCGA (Triosephosphate isomerase OS=Mycoplasma gallisepticum GN=tpiA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.110e-12
Identity = 45/130 (34.62%), Postives = 66/130 (50.77%), Query Frame = 1
Query:  292 SSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIE--IAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            +S K ++ GNWK   T + + +  S LN  KL            V++     +  +R E  + AQ++      A TG +S EQLKDIG  +V++GHSERR +  E D+ I +K    L   +  I CIGE
Sbjct:    2 NSMKRYIFGNWKTYKTTQEVKEFFSVLNQTKLTKNPDVVFGVAPVFVHLGLANQLERNECLVLAQDANYVMNKANTGTVSYEQLKDIGVNYVIIGHSERRKLFHESDELINQKVKTLLENKMRPILCIGE 131          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_FLAJ1 (Triosephosphate isomerase OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) GN=tpiA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.110e-12
Identity = 48/129 (37.21%), Postives = 65/129 (50.39%), Query Frame = 1
Query:  301 KFFVGGNWKCNGTKESITKLVSDLNDAKL--EXXXXXXXXXXFVYIDQVKNSLTDR-IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQ 678
            K  V GNWK +       +L+++L  AK+  +          FV +      L +  I ++AQN    +GGAFTGEIS + L  IG   V+LGHSERR +  E D  I  K   AL   + VI C GE+
Sbjct:    3 KSIVAGNWKMHKNAAQTEELLNELI-AKIPAKTNAQVIVAPTFVNLQAAAAKLKNTTIGVSAQNVHQAEGGAFTGEISADMLTSIGVNTVILGHSERRAIFHETDALIANKVDTALKHDMTVIFCFGEE 130          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_BUCCC (Triosephosphate isomerase OS=Buchnera aphidicola subsp. Cinara cedri GN=tpiA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.110e-12
Identity = 48/130 (36.92%), Postives = 63/130 (48.46%), Query Frame = 1
Query:  301 KFFVGGNWKCNGTKESITKLVSDLND--AKLEXXXXXXXXXXFVYIDQVKNSLTD---RIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            K  + GNWK NG+K+ I   +  LN    K             +Y   ++N  +       + AQN  +   G FTGEIS   LKDIG K+V++GHSERR    E ++ I KK      E L  I CIGE
Sbjct:    3 KPIIVGNWKLNGSKKLIESFLKQLNQFLIKYYKICTVVIAPPVLYSHLIQNMFSSDKKNFFLGAQNIDIHFSGPFTGEISPIMLKDIGIKYVIIGHSERRLNHKETNEIIAKKFCMLKEENLVPILCIGE 132          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_BACST (Triosephosphate isomerase OS=Bacillus stearothermophilus GN=tpiA PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.110e-12
Identity = 44/128 (34.38%), Postives = 65/128 (50.78%), Query Frame = 1
Query:  301 KFFVGGNWKCNGTKESITKLVSDLND-AKLEXXXXXXXXXXFVYIDQVKNSL--TDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            K  + GNWK + T     + V D+                 F+++D++  +   TD ++I AQ       GA+TGE+S   LKD+G  +V+LGHSERR +  E D+ + KK   A + GL  I C GE
Sbjct:    3 KPIIAGNWKMHKTLAEAVQFVEDVKGHVPPADEVISVVCAPFLFLDRLVQAADGTD-LKIGAQTMHFADQGAYTGEVSPVMLKDLGVTYVILGHSERRQMFAETDETVNKKVLAAFTRGLIPIICCGE 129          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_ANOFW (Triosephosphate isomerase OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.110e-12
Identity = 43/127 (33.86%), Postives = 61/127 (48.03%), Query Frame = 1
Query:  301 KFFVGGNWKCNGTKESITKLVSDLNDA--KLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            K  + GNWK + T +   + V ++       E                V+ +    ++I AQN      GAFTGEIS   LKD+G ++V++GHSERR +  E D+ + KK   A   GL  I C GE
Sbjct:    3 KPIIAGNWKMHKTLKEALQFVEEVKHEVPSNEQVDAVVCAPALFLAHLVEATKGTNVKIGAQNMHFEDQGAFTGEISPVALKDLGVEYVIIGHSERREMFAETDETVNKKVLAAFKHGLVPIVCCGE 129          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_SULDN (Triosephosphate isomerase OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) GN=tpiA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.450e-12
Identity = 42/122 (34.43%), Postives = 67/122 (54.92%), Query Frame = 1
Query:  310 VGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            +  N K N T+E   K + ++ ++ L           F  I  + +S  + + + AQN++  + GAFTGEI  EQL++ G K +++GHSERRHVIGE    +  K  +  + G  +I C+GE
Sbjct:    3 IAANLKTNLTREKTAKYIKEV-ESFLNQHNISQEVFVFPAISNLISSSAN-VVVGAQNAYPTQNGAFTGEIGNEQLEEFGIKTILIGHSERRHVIGETQDSLIVKFNFYKNLGFKIIYCVGE 122          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_STREM (Triosephosphate isomerase OS=Streptococcus equi subsp. zooepidemicus (strain MGCS10565) GN=tpiA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.450e-12
Identity = 49/132 (37.12%), Postives = 66/132 (50.00%), Query Frame = 1
Query:  295 SNKFFVGGNWKCNGT----KESITKLVSDLNDAKLEXXXXXXXXXXFVY-IDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            S K  + GNWK N      K  +  +VS L    L            V  I+  K+S+   +++AAQN +    GA+TGE S + L D+G  +VV+GHSERR    E D+ I KKA    + GL  I C GE
Sbjct:    2 SRKPIIAGNWKMNKNPQEAKAFVEAVVSKLPSNDLVDVAVAAPAVDLVTTIEAAKDSV---LKVAAQNCYFENSGAYTGETSPKVLADMGADYVVIGHSERRDYFHETDEDINKKAKAIFANGLTPIICCGE 130          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_OCEIH (Triosephosphate isomerase OS=Oceanobacillus iheyensis GN=tpiA PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.450e-12
Identity = 45/132 (34.09%), Postives = 64/132 (48.48%), Query Frame = 1
Query:  301 KFFVGGNWKCNGTKESITKLVSDL-------NDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            K  + GNWK N       + ++ +       ND  +E             ++Q K S    +++AAQN      GAFTGE+S   LKD+G   VVLGHSERR +  E ++ + KK   A +  L  I C+GE
Sbjct:    3 KKVIAGNWKMNKVLSEAGEFMNSVVPKAPKGND--VEAIVCAPFPFLSKLVEQAKGS---EVKVAAQNMHFEDSGAFTGEVSPVMLKDLGVTHVVLGHSERRELFAETNELVNKKTKAAFAHDLTPIVCVGE 129          
The following BLAST results are available for this feature:
BLAST of FC876189 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 483
Match NameE-valueIdentityDescription
TPIS_COREF8.498e-1333.08Triosephosphate isomerase OS=Corynebacterium effic... [more]
TPIS_BACME8.498e-1334.38Triosephosphate isomerase OS=Bacillus megaterium G... [more]
TPIS_MYCGA1.110e-1234.62Triosephosphate isomerase OS=Mycoplasma gallisepti... [more]
TPIS_FLAJ11.110e-1237.21Triosephosphate isomerase OS=Flavobacterium johnso... [more]
TPIS_BUCCC1.110e-1236.92Triosephosphate isomerase OS=Buchnera aphidicola s... [more]
TPIS_BACST1.110e-1234.38Triosephosphate isomerase OS=Bacillus stearothermo... [more]
TPIS_ANOFW1.110e-1233.86Triosephosphate isomerase OS=Anoxybacillus flavith... [more]
TPIS_SULDN1.450e-1234.43Triosephosphate isomerase OS=Sulfurimonas denitrif... [more]
TPIS_STREM1.450e-1237.12Triosephosphate isomerase OS=Streptococcus equi su... [more]
TPIS_OCEIH1.450e-1234.09Triosephosphate isomerase OS=Oceanobacillus iheyen... [more]

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Properties
Property NameValue
Genbank descriptionC32001D11EF DevOvary1 Citrus clementina cDNA clone C32001D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876189 ID=FC876189; Name=FC876189; organism=Citrus clementina; type=EST; length=678bp
TCGCCGGGGGGAAACCACAACGTGACCCTTCGTCCCACCCTCTCCACCAA
CCAAACACACATACACAAAGGCTGAGCAAGAGCAAGAGCAAGAGCCAAAG
CAGCTGAGATTATAATTTGACTTTCACTTTGACTTTTCACAATGGCGTCA
ATGGTCTCCACAAACTGCGCTCAATTCTCCGGCCTGCGCCGCTCATCGCC
CACACAGTCTTTTTCACAGCACGTCAACTCTCACCTCCGCCTCTTCTCTT
CTCGTAGACCTCGCCGCGGCAGCAGCGTTGTCGCCATGGCCAGCTCCAAC
AAGTTCTTTGTTGGGGGAAACTGGAAGTGTAATGGAACAAAGGAATCTAT
CACCAAGCTTGTTTCGGACCTGAACGATGCAAAGTTGGAGGCAGATGTTG
ATGTTGTGGTAGCGCCTCCCTTTGTTTACATTGATCAAGTGAAGAATTCA
TTAACAGATAGAATTGAGATAGCAGCTCAGAACTCTTGGGTCGGAAAAGG
TGGAGCATTTACAGGAGAAATCAGTGTGGAACAACTGAAAGATATTGGCT
GCAAGTGGGTTGTTCTGGGGCATTCTGAGCGCAGACATGTTATTGGTGAA
GATGATCAGTTTATAGGGAAGAAAGCTGCCTATGCCTTGAGCGAGGGACT
TGGTGTAATAGCTTGTATCGGGGAACAG
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