FC876189

Overview
NameFC876189
Unique NameFC876189
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_PEDPA (Triosephosphate isomerase OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=tpiA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.217e-12
Identity = 44/126 (34.92%), Postives = 64/126 (50.79%), Query Frame = 1
Query:  310 VGGNWKCNG----TKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            + GNWK N     T+E +  +   L DA +              +  V  S  ++++ AA+NS+    GAFTGE S + L ++G  +VV+GHSERR   GE D+ I KKA    +  +  I C GE
Sbjct:    6 IAGNWKMNKNPQETQEFLDAIKGKLPDASVVESVIAAPAIDLSTL--VAFSKDEQLKTAAENSYFEDEGAFTGETSPKALNEMGVNYVVIGHSERRQYFGETDEDINKKAKAIFNNNMTPIICCGE 129          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_DICT6 (Triosephosphate isomerase OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=tpiA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.217e-12
Identity = 45/126 (35.71%), Postives = 64/126 (50.79%), Query Frame = 1
Query:  310 VGGNWKCNGT---KESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQ 678
            +  NWK   T    ES  K   +L+    E           +Y+   K      I++ AQN +  K GA+TGEIS   LKD+ C +V++GHSERR+   E ++ I KK   A + GL  I C+GE+
Sbjct:    6 IAANWKMYKTCAETESFIKEFIELSKGYEEKEIVICPPFTSLYVAS-KLLKDTAIKLGAQNMFWEKEGAYTGEISPIMLKDLNCTYVIIGHSERRNYFSETNEMINKKIKSAFNYGLIPIFCVGEK 130          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_BACCN (Triosephosphate isomerase OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=tpiA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.217e-12
Identity = 46/128 (35.94%), Postives = 58/128 (45.31%), Query Frame = 1
Query:  301 KFFVGGNWKCNGTKESITKLVSDLND---AKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            K  + GNWK N T       V ++     A             F+         TD +++ AQN    K GAFTGEIS   L D+   +VVLGHSERR +  E D+ + KK   A   GL  I C GE
Sbjct:    3 KPIIAGNWKMNKTLSEAVSFVEEVKGQIPAASAVDAVVCSPALFLERLVAATQGTD-LKVGAQNMHFEKNGAFTGEISPVALSDLKVSYVVLGHSERREMFAETDETVNKKTLAAFEHGLTPIVCCGE 129          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_STRP8 (Triosephosphate isomerase OS=Streptococcus pyogenes serotype M18 GN=tpiA PE=3 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 5.508e-12
Identity = 48/132 (36.36%), Postives = 65/132 (49.24%), Query Frame = 1
Query:  295 SNKFFVGGNWKCNGT----KESITKLVSDLNDAKLEXXXXXXXXXXFVY-IDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            S K  + GNWK N      K  +  + S L    L            V  I+  K+S+   +++AAQN +    GAFTGE S + L ++G  +VV+GHSERR    E D+ I KKA    + GL  I C GE
Sbjct:    2 SRKPIIAGNWKMNKNPQEAKAFVEAVASKLPSTDLVDVAVAAPAVDLVTTIEAAKDSV---LKVAAQNCYFENTGAFTGETSPKVLAEMGADYVVIGHSERRDYFHETDEDINKKAKAIFANGLTPIICCGE 130          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_STRP6 (Triosephosphate isomerase OS=Streptococcus pyogenes serotype M6 GN=tpiA PE=1 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 5.508e-12
Identity = 47/132 (35.61%), Postives = 65/132 (49.24%), Query Frame = 1
Query:  295 SNKFFVGGNWKCNGTKES----ITKLVSDLNDAKLEXXXXXXXXXXFVY-IDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            S K  + GNWK N   +     +  + S L    L            V  I+  K+S+   +++AAQN +    GAFTGE S + L ++G  +VV+GHSERR    E D+ I KKA    + GL  I C GE
Sbjct:    2 SRKPIIAGNWKMNKNPQEARAFVEAVASKLPSTDLVDVAVAAPAVDLVTTIEAAKDSV---LKVAAQNCYFENTGAFTGETSPKVLAEMGADYVVIGHSERRDYFHETDEDINKKAKAIFANGLTPIVCCGE 130          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_BACHK (Triosephosphate isomerase OS=Bacillus thuringiensis subsp. konkukian GN=tpiA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.508e-12
Identity = 46/128 (35.94%), Postives = 58/128 (45.31%), Query Frame = 1
Query:  301 KFFVGGNWKCNGTKESITKLVSDLND---AKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            K  + GNWK N T       V ++     A             F+         TD +++ AQN    K GAFTGEIS   L D+   +VVLGHSERR +  E D+ + KK   A   GL  I C GE
Sbjct:    3 KPIIAGNWKMNKTLSEAVSFVEEVKGQIPAASAVDAVVCSPALFLERLVAATEGTD-LQVGAQNMHFEKNGAFTGEISPVALSDLKVGYVVLGHSERREMFAETDESVNKKTIAAFEHGLTPIVCCGE 129          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_BACCZ (Triosephosphate isomerase OS=Bacillus cereus (strain ZK / E33L) GN=tpiA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.508e-12
Identity = 46/128 (35.94%), Postives = 58/128 (45.31%), Query Frame = 1
Query:  301 KFFVGGNWKCNGTKESITKLVSDLND---AKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            K  + GNWK N T       V ++     A             F+         TD +++ AQN    K GAFTGEIS   L D+   +VVLGHSERR +  E D+ + KK   A   GL  I C GE
Sbjct:    3 KPIIAGNWKMNKTLSEAVSFVEEVKGQIPAASAVDAVVCSPALFLERLVAATEGTD-LQVGAQNMHFEKNGAFTGEISPVALSDLKVGYVVLGHSERREMFAETDESVNKKTIAAFEHGLTPIVCCGE 129          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_BACCR (Putative triosephosphate isomerase OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=tpiA PE=5 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.508e-12
Identity = 46/128 (35.94%), Postives = 58/128 (45.31%), Query Frame = 1
Query:  301 KFFVGGNWKCNGTKESITKLVSDLND---AKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            K  + GNWK N T       V ++     A             F+         TD +++ AQN    K GAFTGEIS   L D+   +VVLGHSERR +  E D+ + KK   A   GL  I C GE
Sbjct:    3 KPIIAGNWKMNKTLSEAVSFVEEVKGQIPAASAVDAVVCSPALFLERLVAATEGTD-LQVGAQNMHFEKNGAFTGEISPVALSDLKVGYVVLGHSERREMFAETDESVNKKTIAAFEHGLTPIVCCGE 129          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_BACCE (Triosephosphate isomerase OS=Bacillus cereus GN=tpiA PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 5.508e-12
Identity = 46/128 (35.94%), Postives = 58/128 (45.31%), Query Frame = 1
Query:  301 KFFVGGNWKCNGTKESITKLVSDLND---AKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            K  + GNWK N T       V ++     A             F+         TD +++ AQN    K GAFTGEIS   L D+   +VVLGHSERR +  E D+ + KK   A   GL  I C GE
Sbjct:    3 KPIIAGNWKMNKTLSEAVSFVEEVKGQIPAASAVDAVVCSPALFLERLVAATEGTD-LQVGAQNMHFEKNGAFTGEISPVALSDLKVGYVVLGHSERREMFAETDESVNKKTIAAFEHGLTPIVCCGE 129          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_BACC7 (Triosephosphate isomerase OS=Bacillus cereus (strain AH187) GN=tpiA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.508e-12
Identity = 46/128 (35.94%), Postives = 58/128 (45.31%), Query Frame = 1
Query:  301 KFFVGGNWKCNGTKESITKLVSDLND---AKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            K  + GNWK N T       V ++     A             F+         TD +++ AQN    K GAFTGEIS   L D+   +VVLGHSERR +  E D+ + KK   A   GL  I C GE
Sbjct:    3 KPIIAGNWKMNKTLSEAVSFVEEVKGQIPAASAVDAVVCSPALFLERLVAATEGTD-LQVGAQNMHFEKNGAFTGEISPVALSDLKVGYVVLGHSERREMFAETDESVNKKTIAAFEHGLTPIVCCGE 129          
The following BLAST results are available for this feature:
BLAST of FC876189 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 483
Match NameE-valueIdentityDescription
TPIS_PEDPA4.217e-1234.92Triosephosphate isomerase OS=Pediococcus pentosace... [more]
TPIS_DICT64.217e-1235.71Triosephosphate isomerase OS=Dictyoglomus thermoph... [more]
TPIS_BACCN4.217e-1235.94Triosephosphate isomerase OS=Bacillus cereus subsp... [more]
TPIS_STRP85.508e-1236.36Triosephosphate isomerase OS=Streptococcus pyogene... [more]
TPIS_STRP65.508e-1235.61Triosephosphate isomerase OS=Streptococcus pyogene... [more]
TPIS_BACHK5.508e-1235.94Triosephosphate isomerase OS=Bacillus thuringiensi... [more]
TPIS_BACCZ5.508e-1235.94Triosephosphate isomerase OS=Bacillus cereus (stra... [more]
TPIS_BACCR5.508e-1235.94Putative triosephosphate isomerase OS=Bacillus cer... [more]
TPIS_BACCE5.508e-1235.94Triosephosphate isomerase OS=Bacillus cereus GN=tp... [more]
TPIS_BACC75.508e-1235.94Triosephosphate isomerase OS=Bacillus cereus (stra... [more]

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Properties
Property NameValue
Genbank descriptionC32001D11EF DevOvary1 Citrus clementina cDNA clone C32001D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876189 ID=FC876189; Name=FC876189; organism=Citrus clementina; type=EST; length=678bp
TCGCCGGGGGGAAACCACAACGTGACCCTTCGTCCCACCCTCTCCACCAA
CCAAACACACATACACAAAGGCTGAGCAAGAGCAAGAGCAAGAGCCAAAG
CAGCTGAGATTATAATTTGACTTTCACTTTGACTTTTCACAATGGCGTCA
ATGGTCTCCACAAACTGCGCTCAATTCTCCGGCCTGCGCCGCTCATCGCC
CACACAGTCTTTTTCACAGCACGTCAACTCTCACCTCCGCCTCTTCTCTT
CTCGTAGACCTCGCCGCGGCAGCAGCGTTGTCGCCATGGCCAGCTCCAAC
AAGTTCTTTGTTGGGGGAAACTGGAAGTGTAATGGAACAAAGGAATCTAT
CACCAAGCTTGTTTCGGACCTGAACGATGCAAAGTTGGAGGCAGATGTTG
ATGTTGTGGTAGCGCCTCCCTTTGTTTACATTGATCAAGTGAAGAATTCA
TTAACAGATAGAATTGAGATAGCAGCTCAGAACTCTTGGGTCGGAAAAGG
TGGAGCATTTACAGGAGAAATCAGTGTGGAACAACTGAAAGATATTGGCT
GCAAGTGGGTTGTTCTGGGGCATTCTGAGCGCAGACATGTTATTGGTGAA
GATGATCAGTTTATAGGGAAGAAAGCTGCCTATGCCTTGAGCGAGGGACT
TGGTGTAATAGCTTGTATCGGGGAACAG
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