FC876189

Overview
NameFC876189
Unique NameFC876189
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10307 contig Ccv1_Contig10307:1..678. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_CANGA (Triosephosphate isomerase OS=Candida glabrata GN=TPI1 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.062e-27
Identity = 59/125 (47.20%), Postives = 81/125 (64.80%), Query Frame = 1
Query:  304 FFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDR-IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            FFVGGN+K NGTK+SI ++V  LN A L             Y+D   + ++ + + +  QN++    GA+TGE SV+QLKD+G KWV+LGHSERR    EDD+ + +K  +AL +GLGVI CIGE
Sbjct:    5 FFVGGNFKLNGTKKSIKEIVDRLNTASLPENVEVVICPPATYLDYTVSLVSKKQVTVGGQNTYTKASGAYTGENSVDQLKDVGAKWVILGHSERRTYFHEDDKIVAEKTKFALDQGLGVILCIGE 129          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_TAESO (Triosephosphate isomerase OS=Taenia solium PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.008e-26
Identity = 57/127 (44.88%), Postives = 74/127 (58.27%), Query Frame = 1
Query:  295 SNKFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            + K FVGGNWK NG+   I      L  A  +            Y+   ++     I+IAA+N +    GAFTGEIS E +KD GC+WV+LGHSERRH+ GE ++ IG+K  +AL  GL VI CIGE
Sbjct:    2 TRKLFVGGNWKMNGSYSHINTFFDTLQKADTDPNADIVIGVPACYLKYAQDKAPKGIKIAAENCYKVGSGAFTGEISTEMIKDCGCEWVILGHSERRHIFGESNELIGEKVKHALDSGLNVIPCIGE 128          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_DEBHA (Triosephosphate isomerase OS=Debaryomyces hansenii GN=TPI1 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.008e-26
Identity = 61/128 (47.66%), Postives = 80/128 (62.50%), Query Frame = 1
Query:  295 SNKFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDR-IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            + +FFVGGN+K NGT+ES++K+V  LN A+L             YI    N    + IE++AQN +    GA+TGEIS EQ+KD+G  W + GHSERR +I E D FI  K  +AL +GL VI CIGE
Sbjct:    2 ARQFFVGGNFKMNGTRESVSKIVDGLNKAELPSNVEVVIAPPAPYIALAVNENKQKTIEVSAQNCFDKASGAYTGEISPEQIKDLGATWTLTGHSERRTIIKESDDFIASKTKFALDQGLSVILCIGE 129          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_YARLI (Triosephosphate isomerase OS=Yarrowia lipolytica GN=TPI1 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.132e-26
Identity = 63/128 (49.22%), Postives = 79/128 (61.72%), Query Frame = 1
Query:  295 SNKFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTD-RIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            S  FFVGGN+K NG+ ESI  +V  LN ++L+          F Y+   K SL    + +A QNS+    GAFTGE+SV QLKD+G KWV+LGHSERR +  E  ++I  K  YAL  GL VI CIGE
Sbjct:    2 SRTFFVGGNFKMNGSLESIKAIVERLNASELDPKTEVVISPPFPYLLLAKESLKKPTVSVAGQNSFDKGDGAFTGEVSVAQLKDVGAKWVILGHSERRTINKESSEWIADKTKYALDNGLDVILCIGE 129          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_ASHGO (Triosephosphate isomerase OS=Ashbya gossypii GN=TPI1 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.132e-26
Identity = 57/125 (45.60%), Postives = 81/125 (64.80%), Query Frame = 1
Query:  304 FFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTD-RIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            FFVGGN+K NG+K+SI ++V  LN A L             Y+D   + ++  ++ + AQN++    GA+TGE SV+Q+KD+G KWV+LGHSERR    EDD+ + +K A+AL  G+ VI CIGE
Sbjct:    5 FFVGGNFKLNGSKQSIKEIVERLNTADLADNVEVVICPPATYLDHAVSLVSHPQVTVGAQNAYTKASGAYTGENSVDQIKDVGAKWVILGHSERRTYFNEDDEQVAEKTAFALERGVSVILCIGE 129          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_KLUMA (Triosephosphate isomerase OS=Kluyveromyces marxianus GN=TPI1 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.702e-26
Identity = 59/125 (47.20%), Postives = 79/125 (63.20%), Query Frame = 1
Query:  304 FFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQ-VKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            FF+GGN+K NGTK SI ++V  LN A +             Y+D  V  +   ++ +AAQN+++   GAFTGE SVEQ+KD+G +WV+LGHSERR    E D+FI  K  +AL  G+ VI CIGE
Sbjct:    5 FFIGGNFKMNGTKASIKEIVERLNSASIPSNVEVVIAPPAAYLDHAVSLNKKAQVSVAAQNAYLKASGAFTGENSVEQIKDVGAEWVILGHSERRTYFHETDEFIADKTKFALDSGVKVILCIGE 129          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_PARBA (Triosephosphate isomerase OS=Paracoccidioides brasiliensis (strain ATCC MYA-826 / Pb01) GN=TPI1 PE=1 SV=3)

HSP 1 Score: 116.316 bits (290), Expect = 1.493e-25
Identity = 56/125 (44.80%), Postives = 81/125 (64.80%), Query Frame = 1
Query:  301 KFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            KFFVGGN+K NGT +SIT ++++LN AKL+           +Y+   +     ++ ++AQN +    GAFTGE+SVEQL+D    W + GHSERR ++ EDD+F+ +K   A++ GL VI CIGE
Sbjct:    4 KFFVGGNFKMNGTAKSITHIITNLNSAKLDPSTEIVIAPPAIYLVLARQLANGQVAVSAQNVFDKPNGAFTGELSVEQLRDEKITWTLAGHSERRVLLREDDEFVARKTKAAINGGLNVILCIGE 128          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_CULTA (Triosephosphate isomerase OS=Culex tarsalis GN=Tpi PE=1 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 1.950e-25
Identity = 61/125 (48.80%), Postives = 73/125 (58.40%), Query Frame = 1
Query:  301 KFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            KF VGGNWK NG K SI  L   L    L             Y+   ++ L D + +AAQN +    GAFTGEIS   LKD+   WV+LGHSERR + GE D+ I  K A+AL+EGL VIACIGE
Sbjct:    4 KFCVGGNWKMNGDKASIADLCKVLTTGPLNADTEVVVGCPAPYLTLARSQLPDSVCVAAQNCYKVPKGAFTGEISPAMLKDLNIGWVILGHSERRAIFGESDELIADKVAHALAEGLKVIACIGE 128          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_EMENI (Triosephosphate isomerase OS=Emericella nidulans GN=tpiA PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 9.678e-25
Identity = 57/125 (45.60%), Postives = 76/125 (60.80%), Query Frame = 1
Query:  301 KFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            KFFVGGN+K NG  ES T ++ +LN A L+           +Y+ Q +      I +AAQN +    GAFTGEISV+QL++    W +LGHSERR ++ E D+FI +K   A+  GL VI CIGE
Sbjct:    4 KFFVGGNFKMNGNAESTTSIIKNLNSANLDKSVEVVVSPPALYLLQAREVANKEIGVAAQNVFDKPNGAFTGEISVQQLREANIDWTILGHSERRVILKETDEFIARKTKAAIEGGLQVIFCIGE 128          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_CAEEL (Triosephosphate isomerase OS=Caenorhabditis elegans GN=tpi-1 PE=1 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 9.678e-25
Identity = 57/128 (44.53%), Postives = 76/128 (59.38%), Query Frame = 1
Query:  295 SNKFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQ 678
            + KFFVGGNWK NG   S+  +V+ LN +               Y+   K+ L   + +AAQN +    GAFTGEIS   +KD+G +WV+LGHSERRHV GE D  I +K  +AL  G+ V+ CIGE+
Sbjct:    2 TRKFFVGGNWKMNGDYASVDGIVTFLNASADNSSVDVVVAPPAPYLAYAKSKLKAGVLVAAQNCYKVPKGAFTGEISPAMIKDLGLEWVILGHSERRHVFGESDALIAEKTVHALEAGIKVVFCIGEK 129          
The following BLAST results are available for this feature:
BLAST of FC876189 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 483
Match NameE-valueIdentityDescription
TPIS_CANGA6.062e-2747.20Triosephosphate isomerase OS=Candida glabrata GN=T... [more]
TPIS_TAESO3.008e-2644.88Triosephosphate isomerase OS=Taenia solium PE=2 SV... [more]
TPIS_DEBHA3.008e-2647.66Triosephosphate isomerase OS=Debaryomyces hansenii... [more]
TPIS_YARLI5.132e-2649.22Triosephosphate isomerase OS=Yarrowia lipolytica G... [more]
TPIS_ASHGO5.132e-2645.60Triosephosphate isomerase OS=Ashbya gossypii GN=TP... [more]
TPIS_KLUMA6.702e-2647.20Triosephosphate isomerase OS=Kluyveromyces marxian... [more]
TPIS_PARBA1.493e-2544.80Triosephosphate isomerase OS=Paracoccidioides bras... [more]
TPIS_CULTA1.950e-2548.80Triosephosphate isomerase OS=Culex tarsalis GN=Tpi... [more]
TPIS_EMENI9.678e-2545.60Triosephosphate isomerase OS=Emericella nidulans G... [more]
TPIS_CAEEL9.678e-2544.53Triosephosphate isomerase OS=Caenorhabditis elegan... [more]

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Properties
Property NameValue
Genbank descriptionC32001D11EF DevOvary1 Citrus clementina cDNA clone C32001D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876189 ID=FC876189; Name=FC876189; organism=Citrus clementina; type=EST; length=678bp
TCGCCGGGGGGAAACCACAACGTGACCCTTCGTCCCACCCTCTCCACCAA
CCAAACACACATACACAAAGGCTGAGCAAGAGCAAGAGCAAGAGCCAAAG
CAGCTGAGATTATAATTTGACTTTCACTTTGACTTTTCACAATGGCGTCA
ATGGTCTCCACAAACTGCGCTCAATTCTCCGGCCTGCGCCGCTCATCGCC
CACACAGTCTTTTTCACAGCACGTCAACTCTCACCTCCGCCTCTTCTCTT
CTCGTAGACCTCGCCGCGGCAGCAGCGTTGTCGCCATGGCCAGCTCCAAC
AAGTTCTTTGTTGGGGGAAACTGGAAGTGTAATGGAACAAAGGAATCTAT
CACCAAGCTTGTTTCGGACCTGAACGATGCAAAGTTGGAGGCAGATGTTG
ATGTTGTGGTAGCGCCTCCCTTTGTTTACATTGATCAAGTGAAGAATTCA
TTAACAGATAGAATTGAGATAGCAGCTCAGAACTCTTGGGTCGGAAAAGG
TGGAGCATTTACAGGAGAAATCAGTGTGGAACAACTGAAAGATATTGGCT
GCAAGTGGGTTGTTCTGGGGCATTCTGAGCGCAGACATGTTATTGGTGAA
GATGATCAGTTTATAGGGAAGAAAGCTGCCTATGCCTTGAGCGAGGGACT
TGGTGTAATAGCTTGTATCGGGGAACAG
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