FC876189

Overview
NameFC876189
Unique NameFC876189
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_PARD8 (Triosephosphate isomerase OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=tpiA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.395e-12
Identity = 45/128 (35.16%), Postives = 64/128 (50.00%), Query Frame = 1
Query:  301 KFFVGGNWKCNGTKESITKLVSDLNDAKL--EXXXXXXXXXXFVYIDQVKNSL-TDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            K  V GNWK N T      L   L++A               F ++  V  ++ T++I +AA+N    + GA+TGE+S   +   G K+V+LGHSERR    E  + +  K   AL+ GL  I CIGE
Sbjct:    3 KNIVAGNWKMNTTLAEGLALAKGLDEALKGKTPNCDVIIGTPFTHLASVAAAIDTNKIGVAAENCADKEKGAYTGEVSAAMVASTGAKYVILGHSERRAYYHETPEILKTKVELALANGLTPIFCIGE 130          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_HALHL (Triosephosphate isomerase OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.395e-12
Identity = 37/122 (30.33%), Postives = 63/122 (51.64%), Query Frame = 1
Query:  310 VGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            + GNWK NG ++ + ++     D+  +          +  +    + L   + + AQ+      GA+TGE+S   L + GC++V++GHSERR + GED+  +  K   A + GL  I C+GE
Sbjct:    6 IAGNWKMNGDQDLVRRVAERAADSAGDAELAVCPP--YPLLAAAASQLPFGVALGAQDVSEYDSGAYTGEVSASMLLEAGCRYVIVGHSERRTLYGEDNGRVAGKFVAARNAGLTPILCVGE 125          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_CUPTR (Triosephosphate isomerase OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=tpiA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.395e-12
Identity = 40/121 (33.06%), Postives = 60/121 (49.59%), Query Frame = 1
Query:  316 GNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLT-DRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            GNWK +G+  +   L+  +                F Y+ Q +  L   ++   AQ+      GAFTGE++   L + GC +V++GHSERR   GE DQ +  KA  AL  G+  + C+GE
Sbjct:    8 GNWKMHGSLAANAALLEGIQAGAGVARATLAVCAPFPYLAQCQALLNGSKVAWGAQDVSAEARGAFTGEVAASMLGEFGCTYVLVGHSERRTYHGETDQAVAAKALRALEFGIVPVVCVGE 128          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_XANP2 (Triosephosphate isomerase OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=tpiA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.227e-11
Identity = 46/137 (33.58%), Postives = 65/137 (47.45%), Query Frame = 1
Query:  286 MASSNKFFVGGNWKCNGTKESITKLVS-------DLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            M +S +  + GNWK NG K S+ ++ +       DL  AKL+              +++  S    +++  QN      GA TG IS E LKD G   V++GHSERR  + E D  +  K   A   GL  I C+GE
Sbjct:    1 MPASRRVLIAGNWKMNGLKSSLAEIEALAAGYDGDLK-AKLDLLVCPPATLLISAAERLAGS---GVQLGGQNCHPAPAGAHTGGISAEMLKDAGVTSVIVGHSERRTNLSESDAVVMAKVKAAWCFGLLPIVCVGE 133          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_TRIEI (Triosephosphate isomerase OS=Trichodesmium erythraeum (strain IMS101) GN=tpiA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.227e-11
Identity = 47/130 (36.15%), Postives = 62/130 (47.69%), Query Frame = 1
Query:  301 KFFVGGNWKCNGT----KESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDR-IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            K  + GNWK   T    KE +  L+S L   K            F  +D +   L    I + AQN      GA+TGEIS   LKD+G  +V++GHSERR   GE D+ +  +   A   GL  I C+GE
Sbjct:    3 KTIIAGNWKMYKTQLEAKEFLEGLMSQLT--KTPEEREVVLCTPFTALDFMSKILHGSLIRLGAQNVHWEDEGAYTGEISGLMLKDVGVSYVIVGHSERRQYFGETDETVNMRLKAAQKHGLTPILCVGE 130          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_STRPF (Triosephosphate isomerase OS=Streptococcus pyogenes serotype M4 (strain MGAS10750) GN=tpiA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.227e-11
Identity = 47/130 (36.15%), Postives = 64/130 (49.23%), Query Frame = 1
Query:  301 KFFVGGNWKCNGT----KESITKLVSDLNDAKLEXXXXXXXXXXFVY-IDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            K  + GNWK N      K  +  + S L    L            V  I+  K+S+   +++AAQN +    GAFTGE S + L ++G  +VV+GHSERR    E D+ I KKA    + GL  I C GE
Sbjct:    4 KPIIAGNWKMNKNPQEAKAFVEAVASKLPSTDLVDVAVAAPAVDLVTTIEAAKDSV---LKVAAQNCYFENTGAFTGETSPKVLAEMGADYVVIGHSERRDYFHETDEDINKKAKAIFANGLTPIVCCGE 130          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_MYCA9 (Triosephosphate isomerase OS=Mycobacterium abscessus (strain ATCC 19977 / DSM 44196) GN=tpiA PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.227e-11
Identity = 51/134 (38.06%), Postives = 64/134 (47.76%), Query Frame = 1
Query:  295 SNKFFVGGNWKCNGTKESITKLVSDLNDA---KLEXXXXXXXXXXFVYIDQVKNSLTD----RIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            S K  + GNWK N        LV  +  +   K            F  I  V+ +L D    R+   AQ+  V   GA+TGE+S   L  +G  +VV+GHSERR   GEDD  +  KAA AL  GL  I CIGE
Sbjct:    2 SRKPLIAGNWKMNLNHFEAIALVQKIAFSLPDKYFDKVDVTVIPPFTDIRSVQ-TLVDGDKLRLTYGAQDLSVYDSGAYTGEVSGAFLAKLGVTYVVVGHSERRQYHGEDDALVAAKAAAALKHGLTPIVCIGE 134          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS1_LISMO (Triosephosphate isomerase 1 OS=Listeria monocytogenes GN=tpiA1 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.227e-11
Identity = 42/127 (33.07%), Postives = 62/127 (48.82%), Query Frame = 1
Query:  301 KFFVGGNWKCNGTKESITKLVSDL-NDAKLEXXXXXXXXXXFVYIDQ-VKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            K  + GNWK N T     +   D+ N+               +++ + V+ +    + ++AQN +    GAFTGEIS   L D+G  +V++GHSERR    E D+ I KKA      G+  I C GE
Sbjct:    3 KPIIAGNWKMNKTAAKAGQFAEDVKNNVPSSDAVESVVAAPALFLQELVRLTEGTDLRVSAQNCYFEDEGAFTGEISPFALADLGVSYVIIGHSERREYFHETDEDINKKAHAIFKHGMTPIICCGE 129          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_THEEB (Triosephosphate isomerase OS=Thermosynechococcus elongatus (strain BP-1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.603e-11
Identity = 40/125 (32.00%), Postives = 63/125 (50.40%), Query Frame = 1
Query:  310 VGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVY--IDQVKNSLTD-RIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            + GNWK + T++     + +     ++            Y  +  +  SL   R+++ AQN      GAFTGEIS   L ++G ++V++GHSERR   GE D  + ++   A S GL  I C+GE
Sbjct:   28 LAGNWKMHKTQQEAVAFLQEFLGELVDTPSDREVVLCVPYTCLSVLSKSLHGTRVKLGAQNVHWADQGAFTGEISPPMLVELGVRYVIIGHSERRQYFGETDATVNQRLRAAQSHGLTPILCVGE 152          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_RALSO (Triosephosphate isomerase OS=Ralstonia solanacearum GN=tpiA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.603e-11
Identity = 42/129 (32.56%), Postives = 63/129 (48.84%), Query Frame = 1
Query:  292 SSNKFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLT-DRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            S+    V GNWK +G+     +L+  +  A  +          F Y+ Q ++ L    +   AQ+      GAFTGE++   L + GC + ++GHSERR   GE D  +  KA  AL  G+  I C+GE
Sbjct:    2 SARPKLVVGNWKLHGSLNGNAELLEKIKAAG-QTRAALAVCAPFPYLAQCQSVLAGSSVAWGAQDVSAETRGAFTGEVAASMLSEFGCGYAIVGHSERRTYHGETDAQVAIKALRALEHGITPIVCVGE 129          
The following BLAST results are available for this feature:
BLAST of FC876189 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 483
Match NameE-valueIdentityDescription
TPIS_PARD89.395e-1235.16Triosephosphate isomerase OS=Parabacteroides dista... [more]
TPIS_HALHL9.395e-1230.33Triosephosphate isomerase OS=Halorhodospira haloph... [more]
TPIS_CUPTR9.395e-1233.06Triosephosphate isomerase OS=Cupriavidus taiwanens... [more]
TPIS_XANP21.227e-1133.58Triosephosphate isomerase OS=Xanthobacter autotrop... [more]
TPIS_TRIEI1.227e-1136.15Triosephosphate isomerase OS=Trichodesmium erythra... [more]
TPIS_STRPF1.227e-1136.15Triosephosphate isomerase OS=Streptococcus pyogene... [more]
TPIS_MYCA91.227e-1138.06Triosephosphate isomerase OS=Mycobacterium abscess... [more]
TPIS1_LISMO1.227e-1133.07Triosephosphate isomerase 1 OS=Listeria monocytoge... [more]
TPIS_THEEB1.603e-1132.00Triosephosphate isomerase OS=Thermosynechococcus e... [more]
TPIS_RALSO1.603e-1132.56Triosephosphate isomerase OS=Ralstonia solanacearu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32001D11EF DevOvary1 Citrus clementina cDNA clone C32001D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876189 ID=FC876189; Name=FC876189; organism=Citrus clementina; type=EST; length=678bp
TCGCCGGGGGGAAACCACAACGTGACCCTTCGTCCCACCCTCTCCACCAA
CCAAACACACATACACAAAGGCTGAGCAAGAGCAAGAGCAAGAGCCAAAG
CAGCTGAGATTATAATTTGACTTTCACTTTGACTTTTCACAATGGCGTCA
ATGGTCTCCACAAACTGCGCTCAATTCTCCGGCCTGCGCCGCTCATCGCC
CACACAGTCTTTTTCACAGCACGTCAACTCTCACCTCCGCCTCTTCTCTT
CTCGTAGACCTCGCCGCGGCAGCAGCGTTGTCGCCATGGCCAGCTCCAAC
AAGTTCTTTGTTGGGGGAAACTGGAAGTGTAATGGAACAAAGGAATCTAT
CACCAAGCTTGTTTCGGACCTGAACGATGCAAAGTTGGAGGCAGATGTTG
ATGTTGTGGTAGCGCCTCCCTTTGTTTACATTGATCAAGTGAAGAATTCA
TTAACAGATAGAATTGAGATAGCAGCTCAGAACTCTTGGGTCGGAAAAGG
TGGAGCATTTACAGGAGAAATCAGTGTGGAACAACTGAAAGATATTGGCT
GCAAGTGGGTTGTTCTGGGGCATTCTGAGCGCAGACATGTTATTGGTGAA
GATGATCAGTTTATAGGGAAGAAAGCTGCCTATGCCTTGAGCGAGGGACT
TGGTGTAATAGCTTGTATCGGGGAACAG
back to top