FC876189

Overview
NameFC876189
Unique NameFC876189
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_LACDL (Triosephosphate isomerase OS=Lactobacillus delbrueckii subsp. lactis GN=tpiA PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.603e-11
Identity = 41/127 (32.28%), Postives = 62/127 (48.82%), Query Frame = 1
Query:  310 VGGNWKCNGTKESITKLVSDLND-----AKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            + GNWK N   +   + V+ + D     +K+E             +   + S    + + A+N +    GAFTGE S   LK++G ++V++GHSERR    E D+ I KKA    + GL  I C GE
Sbjct:    7 IAGNWKLNMNPKETVEFVNAVKDQLPDPSKVESVICAPAVDLDALLKAAEGS---NLHVGAENCYWENSGAFTGETSPAVLKEMGVQYVIIGHSERRDYFHETDEDINKKAKAIFANGLTPILCCGE 130          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_LACDE (Triosephosphate isomerase OS=Lactobacillus delbrueckii subsp. bulgaricus GN=tpiA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.603e-11
Identity = 41/127 (32.28%), Postives = 62/127 (48.82%), Query Frame = 1
Query:  310 VGGNWKCNGTKESITKLVSDLND-----AKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            + GNWK N   +   + V+ + D     +K+E             +   + S    + + A+N +    GAFTGE S   LK++G ++V++GHSERR    E D+ I KKA    + GL  I C GE
Sbjct:    7 IAGNWKLNMNPKETVEFVNAVKDQLPDPSKVESVICAPAVDLDALLKAAEGS---NLHVGAENCYWENSGAFTGETSPAVLKEMGVQYVIIGHSERRDYFHETDEDINKKAKAIFANGLTPILCCGE 130          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_LACDB (Triosephosphate isomerase OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC BAA-365) GN=tpiA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.603e-11
Identity = 41/127 (32.28%), Postives = 62/127 (48.82%), Query Frame = 1
Query:  310 VGGNWKCNGTKESITKLVSDLND-----AKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            + GNWK N   +   + V+ + D     +K+E             +   + S    + + A+N +    GAFTGE S   LK++G ++V++GHSERR    E D+ I KKA    + GL  I C GE
Sbjct:    7 IAGNWKLNMNPKETVEFVNAVKDQLPDPSKVESVICAPAVDLDALLKAAEGS---NLHVGAENCYWENSGAFTGETSPAVLKEMGVQYVIIGHSERRDYFHETDEDINKKAKAIFANGLTPILCCGE 130          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_LACDA (Triosephosphate isomerase OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC 11842 / DSM 20081) GN=tpiA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.603e-11
Identity = 41/127 (32.28%), Postives = 62/127 (48.82%), Query Frame = 1
Query:  310 VGGNWKCNGTKESITKLVSDLND-----AKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            + GNWK N   +   + V+ + D     +K+E             +   + S    + + A+N +    GAFTGE S   LK++G ++V++GHSERR    E D+ I KKA    + GL  I C GE
Sbjct:    7 IAGNWKLNMNPKETVEFVNAVKDQLPDPSKVESVICAPAVDLDALLKAAEGS---NLHVGAENCYWENSGAFTGETSPAVLKEMGVQYVIIGHSERRDYFHETDEDINKKAKAIFANGLTPILCCGE 130          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_PSYCK (Triosephosphate isomerase OS=Psychrobacter cryohalolentis (strain K5) GN=tpiA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.093e-11
Identity = 46/140 (32.86%), Postives = 66/140 (47.14%), Query Frame = 1
Query:  307 FVGGNWKCN-GTKESITKLVSDL-------------NDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKG---GAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            +V GNWK N  T   +  L+ DL             N A+ +          F+++  V   L D   + A     G     GA+TG+ S +Q+ D G  W +LGHSERR    E +  + +K  +ALS+ LGV+ CIGE
Sbjct:    4 WVIGNWKQNPATSHDVNALLDDLCAAISTTKQMSHDNSARCQIMVAPS----FIHLAAVNGRLKDTSILCAAQDVSGHSASVGAYTGDCSAQQIVDAGATWTILGHSERRQYHQESNDTLLQKMIHALSQDLGVVFCIGE 139          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_PROM5 (Triosephosphate isomerase OS=Prochlorococcus marinus (strain MIT 9515) GN=tpiA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.093e-11
Identity = 49/133 (36.84%), Postives = 64/133 (48.12%), Query Frame = 1
Query:  301 KFFVGGNWK----CNGTK---ESITKLVSDL-NDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            K  + GNWK    C  TK   E    L+ DL ND K+           F        S  D ++IA+QN      GAFT EIS + L +   K+ ++GHSE R    E D+ I K+A +A S GL  I C+GE
Sbjct:    3 KSVIAGNWKMHMTCAETKNYLEEFIPLIKDLPNDRKIVIAPPFTAISTFS-----SYSNFDYLDIASQNIHWEDQGAFTAEISPKMLIEHNVKYAIVGHSEPRKYFSESDEQINKRAVFAQSSGLTPIVCVGE 130          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_NITEC (Triosephosphate isomerase OS=Nitrosomonas eutropha (strain C91) GN=tpiA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.093e-11
Identity = 42/128 (32.81%), Postives = 64/128 (50.00%), Query Frame = 1
Query:  307 FVGGNWKCNGT----KESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTD-RIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            FV GNWK  G     +E +  +V  +   +            + Y+ Q ++ L    +    QN      GA+TGE+S   L D GC++V++GHSERR + GED+Q + +K   A  + L  I C+GE
Sbjct:    6 FVAGNWKMYGNLVQNQELLAAIVLGIPSLQ---NASCAVCVPYPYLAQAQSVLKGTHVAWGGQNISQHHQGAYTGEVSAGMLTDFGCRYVIVGHSERRTLYGEDNQMVAEKFHSAQEQSLVPILCVGE 130          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_GEOBB (Triosephosphate isomerase OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=tpiA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.093e-11
Identity = 45/130 (34.62%), Postives = 64/130 (49.23%), Query Frame = 1
Query:  310 VGGNWKCNGTK-------ESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDR-IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            + GNWK   TK       E +  LVS ++  ++           F  +  +  +L    I +AAQ+ +  + GAFTGE+S   L D G   V++GHSERR   GE ++ + KK   AL   L  I CIGE
Sbjct:    6 IAGNWKLFKTKNEALALIEELAPLVSGVDSVEI------VVAPVFTVLPTLPAALAGTGISLAAQDVFWEEEGAFTGEVSPRMLLDAGASHVIIGHSERRQYFGETEETVNKKVKAALKGALVPIVCIGE 129          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS2_BRUSU (Triosephosphate isomerase 2 OS=Brucella suis GN=tpiA2 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.093e-11
Identity = 46/128 (35.94%), Postives = 61/128 (47.66%), Query Frame = 1
Query:  301 KFFVGGNWKCNGTKESITKLVSDLN--DAKLEXXXXXXXXXXFVYIDQVKNSLTDR-IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            KF++G +WK N T          L   DA             F  + +VK  L+   +++ AQN      GA+TGEIS   LKD     V LGHSERR   GE ++ +G K   A+  GL  + CIGE
Sbjct:    3 KFWIGTSWKMNKTLAEARLFAEALKAADAGRSPDIQRFVIPPFTAVREVKEILSGTSVKVGAQNMHWADQGAWTGEISPLMLKDCNLDIVELGHSERREHFGETNETVGLKVEAAVRHGLIPLICIGE 130          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS2_BRUAB (Triosephosphate isomerase 2 OS=Brucella abortus GN=tpiA2 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.093e-11
Identity = 46/128 (35.94%), Postives = 61/128 (47.66%), Query Frame = 1
Query:  301 KFFVGGNWKCNGTKESITKLVSDLN--DAKLEXXXXXXXXXXFVYIDQVKNSLTDR-IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            KF++G +WK N T          L   DA             F  + +VK  L+   +++ AQN      GA+TGEIS   LKD     V LGHSERR   GE ++ +G K   A+  GL  + CIGE
Sbjct:    3 KFWIGTSWKMNKTLAEARLFAEALKAADAGRSPDIQRFVIPPFTAVREVKEILSGTSVKVGAQNMHWADQGAWTGEISPLMLKDCNLDIVELGHSERREHFGETNETVGLKVEAAVRHGLIPLICIGE 130          
The following BLAST results are available for this feature:
BLAST of FC876189 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 483
Match NameE-valueIdentityDescription
TPIS_LACDL1.603e-1132.28Triosephosphate isomerase OS=Lactobacillus delbrue... [more]
TPIS_LACDE1.603e-1132.28Triosephosphate isomerase OS=Lactobacillus delbrue... [more]
TPIS_LACDB1.603e-1132.28Triosephosphate isomerase OS=Lactobacillus delbrue... [more]
TPIS_LACDA1.603e-1132.28Triosephosphate isomerase OS=Lactobacillus delbrue... [more]
TPIS_PSYCK2.093e-1132.86Triosephosphate isomerase OS=Psychrobacter cryohal... [more]
TPIS_PROM52.093e-1136.84Triosephosphate isomerase OS=Prochlorococcus marin... [more]
TPIS_NITEC2.093e-1132.81Triosephosphate isomerase OS=Nitrosomonas eutropha... [more]
TPIS_GEOBB2.093e-1134.62Triosephosphate isomerase OS=Geobacter bemidjiensi... [more]
TPIS2_BRUSU2.093e-1135.94Triosephosphate isomerase 2 OS=Brucella suis GN=tp... [more]
TPIS2_BRUAB2.093e-1135.94Triosephosphate isomerase 2 OS=Brucella abortus GN... [more]

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Properties
Property NameValue
Genbank descriptionC32001D11EF DevOvary1 Citrus clementina cDNA clone C32001D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876189 ID=FC876189; Name=FC876189; organism=Citrus clementina; type=EST; length=678bp
TCGCCGGGGGGAAACCACAACGTGACCCTTCGTCCCACCCTCTCCACCAA
CCAAACACACATACACAAAGGCTGAGCAAGAGCAAGAGCAAGAGCCAAAG
CAGCTGAGATTATAATTTGACTTTCACTTTGACTTTTCACAATGGCGTCA
ATGGTCTCCACAAACTGCGCTCAATTCTCCGGCCTGCGCCGCTCATCGCC
CACACAGTCTTTTTCACAGCACGTCAACTCTCACCTCCGCCTCTTCTCTT
CTCGTAGACCTCGCCGCGGCAGCAGCGTTGTCGCCATGGCCAGCTCCAAC
AAGTTCTTTGTTGGGGGAAACTGGAAGTGTAATGGAACAAAGGAATCTAT
CACCAAGCTTGTTTCGGACCTGAACGATGCAAAGTTGGAGGCAGATGTTG
ATGTTGTGGTAGCGCCTCCCTTTGTTTACATTGATCAAGTGAAGAATTCA
TTAACAGATAGAATTGAGATAGCAGCTCAGAACTCTTGGGTCGGAAAAGG
TGGAGCATTTACAGGAGAAATCAGTGTGGAACAACTGAAAGATATTGGCT
GCAAGTGGGTTGTTCTGGGGCATTCTGAGCGCAGACATGTTATTGGTGAA
GATGATCAGTTTATAGGGAAGAAAGCTGCCTATGCCTTGAGCGAGGGACT
TGGTGTAATAGCTTGTATCGGGGAACAG
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