FC876189

Overview
NameFC876189
Unique NameFC876189
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS2_BRUA2 (Triosephosphate isomerase 2 OS=Brucella abortus (strain 2308) GN=tpiA2 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.093e-11
Identity = 46/128 (35.94%), Postives = 61/128 (47.66%), Query Frame = 1
Query:  301 KFFVGGNWKCNGTKESITKLVSDLN--DAKLEXXXXXXXXXXFVYIDQVKNSLTDR-IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            KF++G +WK N T          L   DA             F  + +VK  L+   +++ AQN      GA+TGEIS   LKD     V LGHSERR   GE ++ +G K   A+  GL  + CIGE
Sbjct:    3 KFWIGTSWKMNKTLAEARLFAEALKAADAGRSPDIQRFVIPPFTAVREVKEILSGTSVKVGAQNMHWADQGAWTGEISPLMLKDCNLDIVELGHSERREHFGETNETVGLKVEAAVRHGLIPLICIGE 130          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_XANCP (Triosephosphate isomerase OS=Xanthomonas campestris pv. campestris GN=tpiA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.734e-11
Identity = 38/123 (30.89%), Postives = 63/123 (51.22%), Query Frame = 1
Query:  310 VGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYI-DQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            V GNWK +GT+   T+LV+ +                  Y+ D +++     +   AQ+    + GA+TGE+S   L D+G ++ ++GHSERR    E  + + +K A A+  GL  + C+GE
Sbjct:    6 VAGNWKLHGTRAFATELVAQVAAHMPLAGVDVVILPPLPYLGDLIEDFEAHHLAFGAQDVSSNEKGAYTGEVSASMLVDVGAEYGLVGHSERRQYHQESSELVARKFAAAMHAGLIPVLCVGE 128          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_XANC8 (Triosephosphate isomerase OS=Xanthomonas campestris pv. campestris (strain 8004) GN=tpiA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.734e-11
Identity = 38/123 (30.89%), Postives = 63/123 (51.22%), Query Frame = 1
Query:  310 VGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYI-DQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            V GNWK +GT+   T+LV+ +                  Y+ D +++     +   AQ+    + GA+TGE+S   L D+G ++ ++GHSERR    E  + + +K A A+  GL  + C+GE
Sbjct:    6 VAGNWKLHGTRAFATELVAQVAAHMPLAGVDVVILPPLPYLGDLIEDFEAHHLAFGAQDVSSNEKGAYTGEVSASMLVDVGAEYGLVGHSERRQYHQESSELVARKFAAAMHAGLIPVLCVGE 128          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_SILST (Triosephosphate isomerase OS=Silicibacter sp. (strain TM1040) GN=tpiA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.734e-11
Identity = 42/120 (35.00%), Postives = 58/120 (48.33%), Query Frame = 1
Query:  316 GNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            GNWK NGT E + +L  +L    L              I +  +   D I I  Q+      GA TG++S + L+D G  +V++GHSERR   GE D  +  K   A + GL  + CIGE
Sbjct:    8 GNWKMNGTGEHLAEL-ENLAQGDLPEGVDVLICPPATLISRAADRAGD-IAIGGQDCHAKTSGAHTGDLSADMLRDAGATYVIIGHSERRADHGEGDADVRAKTEAAQAAGLVAVVCIGE 125          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_RHOPB (Triosephosphate isomerase OS=Rhodopseudomonas palustris (strain BisB18) GN=tpiA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.734e-11
Identity = 46/138 (33.33%), Postives = 65/138 (47.10%), Query Frame = 1
Query:  286 MASSNKFFVGGNWKCNGTKESITKLVSDLNDA-KLEXXXXXXXXXXFVYIDQVKNSL-------TDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            M+++ +  + GNWK NG + S+++L   L  A KL              +      L       ++   I AQ+      GA TG+IS E L D G   V++GHSERR   GE D  + +KA  A   GL  I C+GE
Sbjct:    1 MSAAIRPLIAGNWKMNGLRASLSELKLMLEGAGKLSATADLLICPPATLVAAFAQKLAADTGSRSNSFAIGAQDCHPRASGAHTGDISAEMLADAGASAVIVGHSERRADHGESDALVREKAEAAWRAGLVAIICVGE 138          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_RHOFD (Triosephosphate isomerase OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=tpiA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.734e-11
Identity = 44/126 (34.92%), Postives = 62/126 (49.21%), Query Frame = 1
Query:  301 KFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDR-IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            K  + GNWK NG+  +   LV  L                 VY+ Q +  L    I + AQ+    + GAFTGEIS   L++ G ++ ++GHSERR    E D  +  KA  AL+ G+  I C+GE
Sbjct:    3 KKLIAGNWKMNGSLAANEALVKGLRVGVGASVCQVALCVPSVYLAQCQALLVGTAIALGAQDLSQHEVGAFTGEISGAMLQEFGVRYCIVGHSERRQYHFETDALVAAKAQRALACGITPIVCVGE 128          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_NOCFA (Triosephosphate isomerase OS=Nocardia farcinica GN=tpiA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.734e-11
Identity = 50/133 (37.59%), Postives = 65/133 (48.87%), Query Frame = 1
Query:  295 SNKFFVGGNWKCNGTKESITKLVSDLNDA---KLEXXXXXXXXXXFVYIDQVKNSLT-DRIEIA--AQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            + K  + GNWK N        LV  +  A   K            FV I  V+  +  D++ +   AQ+  V + GA+TGEIS   L  +GC +VV+GHSERR    EDD  +  KA  AL  GL  I CIGE
Sbjct:    2 ARKPLIAGNWKMNLNHLEAIALVQKIAFALPEKYFEKVDVAVIPPFVDIRSVQTLVEGDKLLLTYGAQDVSVHESGAYTGEISASMLAKLGCTFVVVGHSERRQYHHEDDATVLGKAKKALEHGLTPIVCIGE 134          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_GLUDA (Triosephosphate isomerase OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=tpiA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.734e-11
Identity = 45/123 (36.59%), Postives = 61/123 (49.59%), Query Frame = 1
Query:  316 GNWKCNGTKESITKLVSDLND--AKLEXXXXXXXXXXFVYIDQVKNSLTDR-IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            GNWK NG       LV ++ +  A +           F  +  +   L    I + AQ+      GA TG+IS   L D+G ++VVLGHSERR   GE D+ + +K   AL+ GL  I CIGE
Sbjct:    7 GNWKMNGLGAPSRDLVGEIAEGLATIPSPPQVVVCPPFTQLAGIGPLLKGSGIALGAQDCHQAASGAHTGDISAAMLADLGVEYVVLGHSERRRDHGELDETVREKTQTALAAGLTPIVCIGE 129          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_BRAJA (Triosephosphate isomerase OS=Bradyrhizobium japonicum GN=tpiA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.734e-11
Identity = 42/135 (31.11%), Postives = 64/135 (47.41%), Query Frame = 1
Query:  286 MASSNKFFVGGNWKCNGTKESITKLVSDLNDA-----KLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            M  + +  + GNWK NG K S  +  + LN A     K +            + D+ +     ++ + AQ+      GA TG+I+ E L + G   +++GHSERR   GE D  + +KA  A   G+  I CIGE
Sbjct:    1 MTDAIRPLIAGNWKMNGLKASAAEFDAMLNGAADVATKADLLVCPPATLIAAFADKARGK---KVAVGAQDCHPKASGAHTGDIAAEMLANAGATAIIVGHSERRADHGEGDALVRQKAEAAWRAGVTAIVCIGE 132          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_XYLFT (Triosephosphate isomerase OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=tpiA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.570e-11
Identity = 40/123 (32.52%), Postives = 60/123 (48.78%), Query Frame = 1
Query:  310 VGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYI-DQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            V GNWK +G+      LV+ +                 +Y+ D  +    + +   AQN      GA+TGE+S   + D+G  + ++GHSERR    ED + + +K A ALS GL  I C+GE
Sbjct:    6 VAGNWKLHGSHAFAQALVAQVAAGLPLPGVSVIILPPLLYLSDLAQRFKGEGLAFGAQNVSHHDKGAYTGEVSAAMVADVGAHYTLVGHSERREYHHEDSELVARKFAAALSAGLRPILCVGE 128          
The following BLAST results are available for this feature:
BLAST of FC876189 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 483
Match NameE-valueIdentityDescription
TPIS2_BRUA22.093e-1135.94Triosephosphate isomerase 2 OS=Brucella abortus (s... [more]
TPIS_XANCP2.734e-1130.89Triosephosphate isomerase OS=Xanthomonas campestri... [more]
TPIS_XANC82.734e-1130.89Triosephosphate isomerase OS=Xanthomonas campestri... [more]
TPIS_SILST2.734e-1135.00Triosephosphate isomerase OS=Silicibacter sp. (str... [more]
TPIS_RHOPB2.734e-1133.33Triosephosphate isomerase OS=Rhodopseudomonas palu... [more]
TPIS_RHOFD2.734e-1134.92Triosephosphate isomerase OS=Rhodoferax ferrireduc... [more]
TPIS_NOCFA2.734e-1137.59Triosephosphate isomerase OS=Nocardia farcinica GN... [more]
TPIS_GLUDA2.734e-1136.59Triosephosphate isomerase OS=Gluconacetobacter dia... [more]
TPIS_BRAJA2.734e-1131.11Triosephosphate isomerase OS=Bradyrhizobium japoni... [more]
TPIS_XYLFT3.570e-1132.52Triosephosphate isomerase OS=Xylella fastidiosa (s... [more]

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Properties
Property NameValue
Genbank descriptionC32001D11EF DevOvary1 Citrus clementina cDNA clone C32001D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876189 ID=FC876189; Name=FC876189; organism=Citrus clementina; type=EST; length=678bp
TCGCCGGGGGGAAACCACAACGTGACCCTTCGTCCCACCCTCTCCACCAA
CCAAACACACATACACAAAGGCTGAGCAAGAGCAAGAGCAAGAGCCAAAG
CAGCTGAGATTATAATTTGACTTTCACTTTGACTTTTCACAATGGCGTCA
ATGGTCTCCACAAACTGCGCTCAATTCTCCGGCCTGCGCCGCTCATCGCC
CACACAGTCTTTTTCACAGCACGTCAACTCTCACCTCCGCCTCTTCTCTT
CTCGTAGACCTCGCCGCGGCAGCAGCGTTGTCGCCATGGCCAGCTCCAAC
AAGTTCTTTGTTGGGGGAAACTGGAAGTGTAATGGAACAAAGGAATCTAT
CACCAAGCTTGTTTCGGACCTGAACGATGCAAAGTTGGAGGCAGATGTTG
ATGTTGTGGTAGCGCCTCCCTTTGTTTACATTGATCAAGTGAAGAATTCA
TTAACAGATAGAATTGAGATAGCAGCTCAGAACTCTTGGGTCGGAAAAGG
TGGAGCATTTACAGGAGAAATCAGTGTGGAACAACTGAAAGATATTGGCT
GCAAGTGGGTTGTTCTGGGGCATTCTGAGCGCAGACATGTTATTGGTGAA
GATGATCAGTTTATAGGGAAGAAAGCTGCCTATGCCTTGAGCGAGGGACT
TGGTGTAATAGCTTGTATCGGGGAACAG
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