FC876189

Overview
NameFC876189
Unique NameFC876189
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_XYLFA (Triosephosphate isomerase OS=Xylella fastidiosa GN=tpiA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.570e-11
Identity = 40/123 (32.52%), Postives = 60/123 (48.78%), Query Frame = 1
Query:  310 VGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYI-DQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            V GNWK +G+      LV+ +                 +Y+ D  +    + +   AQN      GA+TGE+S   + D+G  + ++GHSERR    ED + + +K A ALS GL  I C+GE
Sbjct:    6 VAGNWKLHGSHAFAQALVAQVAAGLPLLGVSVIILPPLLYLSDLAQRFKGEGLAFGAQNVSHHDKGAYTGEVSAAMVADVGAHYTLVGHSERREYHHEDSELVARKFAAALSAGLRPILCVGE 128          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_XYLF2 (Triosephosphate isomerase OS=Xylella fastidiosa (strain M23) GN=tpiA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.570e-11
Identity = 40/123 (32.52%), Postives = 60/123 (48.78%), Query Frame = 1
Query:  310 VGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYI-DQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            V GNWK +G+      LV+ +                 +Y+ D  +    + +   AQN      GA+TGE+S   + D+G  + ++GHSERR    ED + + +K A ALS GL  I C+GE
Sbjct:    6 VAGNWKLHGSHAFAQALVAQVAAGLPLPGVSVIILPPLLYLSDLAQRFKGEGLAFGAQNVSHHDKGAYTGEVSAAMVADVGAHYTLVGHSERREYHHEDSELVARKFAAALSAGLRPILCVGE 128          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_MYCHR (Triosephosphate isomerase OS=Mycoplasma hyorhinis GN=tpiA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.570e-11
Identity = 40/131 (30.53%), Postives = 59/131 (45.04%), Query Frame = 1
Query:  298 NKFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSL-----TDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            +K  + GNWK N T     +  S  N   +E          F       N       T ++E+A QN    + GA+TGEIS + L D+  K+ ++GHSERR    E D  +  K   A+   +  + C+GE
Sbjct:    2 SKTIIIGNWKMNKTFTQTKEFFSAFNQLYIENKNKINQNLDFAVALPAINVAAFSKNTTKLELAVQNMSQFEKGAYTGEISAQMLLDLNVKYAIIGHSERRQYFKETDLDVNAKTQQAIKNNIIPVVCVGE 132          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_MYCFL (Triosephosphate isomerase OS=Mycoplasma flocculare GN=tpiA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.570e-11
Identity = 40/131 (30.53%), Postives = 61/131 (46.56%), Query Frame = 1
Query:  301 KFFVGGNWKCNGTKESITKLVSDL------NDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            K  + GNWK N T       +         N  K++          F  +  +  S  D++++AAQN      GAFTGEIS + L+D+   +V++GHSERR +  E  + +  K   A    L  + C+GE
Sbjct:    2 KKIIIGNWKMNKTVHETRDFIQKFDIFYSKNLGKIKDNLDFAIAPSFTSLALISTSKIDKLKVAAQNLSQFDSGAFTGEISAKMLQDLAVHYVIIGHSERREIFKEIGEDLTNKILQAQKYNLIPVFCVGE 132          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_LEPBL (Triosephosphate isomerase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=tpiA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.570e-11
Identity = 43/129 (33.33%), Postives = 65/129 (50.39%), Query Frame = 1
Query:  301 KFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXF---VYIDQVKNSLTD-RIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            K  + GNWK N +++    L   + + K+           F   +++  V   L    I + AQN +     AFTGE S EQLK++G K V++GHSERR  +GE + F  +K  + L     V+ C+GE
Sbjct:    3 KTVIAGNWKMNLSEKEALSLAHSIKE-KIPAISKGRISMIFPSTLHLAGVAKILQGTEILVGAQNVYPSGLAAFTGETSPEQLKELGVKVVMIGHSERRQFLGETNSFCNEKIHFLLKNDFIVLYCVGE 130          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_LEPBJ (Triosephosphate isomerase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=tpiA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.570e-11
Identity = 43/129 (33.33%), Postives = 65/129 (50.39%), Query Frame = 1
Query:  301 KFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXF---VYIDQVKNSLTD-RIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            K  + GNWK N +++    L   + + K+           F   +++  V   L    I + AQN +     AFTGE S EQLK++G K V++GHSERR  +GE + F  +K  + L     V+ C+GE
Sbjct:    3 KTVIAGNWKMNLSEKEALSLAHSIKE-KIPAISKGRISMIFPSTLHLAGVAKILQGTEILVGAQNVYPSGLAAFTGETSPEQLKELGVKVVMIGHSERRQFLGETNSFCNEKIHFLLKNDFIVLYCVGE 130          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_DICTD (Triosephosphate isomerase OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=tpiA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.570e-11
Identity = 46/128 (35.94%), Postives = 62/128 (48.44%), Query Frame = 1
Query:  310 VGGNWKCNGT---KESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDR--IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGEQ 678
            +  NWK   T    ES  K   +L+    E           +Y   V N L +   I++ AQN +  K GA+TGEIS   LKD+ C +V++GHSERR    E +  I KK   A    L  I C+GE+
Sbjct:    6 IAANWKMYKTCAETESFIKEFKELSKGYEEKEIVICPPFTSLY---VANKLLEDTPIKLGAQNMFWEKEGAYTGEISPIMLKDLNCSYVIIGHSERRQYFSETNDMINKKLKSAFEYELIPIFCVGEK 130          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_BUCBP (Triosephosphate isomerase OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=tpiA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.570e-11
Identity = 43/130 (33.08%), Postives = 66/130 (50.77%), Query Frame = 1
Query:  301 KFFVGGNWKCNGTKESITKLVSDLNDA----KLEXXXXXXXXXXFVYIDQVKNSLT-DRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            K  +  NWK NG  + +  L+  L +     K +          +VY+  +K+ ++   I + +QN  +   GAFTGE+S+  LKD+G  +V++GHSERR    E+D  I KK        L  + CIGE
Sbjct:    3 KKIIIANWKLNGNIQLLQTLLKPLVNFYIRHKNKSSIKLVIMPPYVYLYPMKSIISHSSILLGSQNVDINLIGAFTGEVSINMLKDVGVSYVLVGHSERRQYHRENDVIIAKKFKIVKDSHLIPVLCIGE 132          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_AYWBP (Triosephosphate isomerase OS=Aster yellows witches'-broom phytoplasma (strain AYWB) GN=tpiA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.570e-11
Identity = 38/123 (30.89%), Postives = 59/123 (47.97%), Query Frame = 1
Query:  310 VGGNWKCNGTKESITKLVSDLN-DAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            + GNWK +  K+   + +  ++     +             +D +       +++ AQN +    GAFTGE+S + L  +G K V+LGHSERR + GE DQ +  K   AL   L    C+GE
Sbjct:   10 IAGNWKMHKCKDEALEFIQKVSLQVPDQTQVQTLIFPQLTLLDPLVQLQGANLQVGAQNMFYETEGAFTGEVSPQNLLSLGVKHVLLGHSERRTLFGETDQTVNLKLLSALKHKLVPTVCVGE 132          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_XANOP (Triosephosphate isomerase OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=tpiA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.663e-11
Identity = 38/123 (30.89%), Postives = 62/123 (50.41%), Query Frame = 1
Query:  310 VGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYI-DQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            V GNWK +G++   T+LV+ L                  Y+ D +++     +   AQ+    + GA+TGE+S   L D+G  + ++GHSERR    E  + + +K A A+  GL  + C+GE
Sbjct:    6 VAGNWKLHGSRAFATELVAKLAAHMPLEGIDVVILPPLPYLGDLIEDFEAHHLSFGAQDVSSNEKGAYTGEVSASMLVDVGAGYGLVGHSERRQYHQESSELVARKFAAAIHAGLTPVLCVGE 128          
The following BLAST results are available for this feature:
BLAST of FC876189 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 483
Match NameE-valueIdentityDescription
TPIS_XYLFA3.570e-1132.52Triosephosphate isomerase OS=Xylella fastidiosa GN... [more]
TPIS_XYLF23.570e-1132.52Triosephosphate isomerase OS=Xylella fastidiosa (s... [more]
TPIS_MYCHR3.570e-1130.53Triosephosphate isomerase OS=Mycoplasma hyorhinis ... [more]
TPIS_MYCFL3.570e-1130.53Triosephosphate isomerase OS=Mycoplasma flocculare... [more]
TPIS_LEPBL3.570e-1133.33Triosephosphate isomerase OS=Leptospira borgpeters... [more]
TPIS_LEPBJ3.570e-1133.33Triosephosphate isomerase OS=Leptospira borgpeters... [more]
TPIS_DICTD3.570e-1135.94Triosephosphate isomerase OS=Dictyoglomus turgidum... [more]
TPIS_BUCBP3.570e-1133.08Triosephosphate isomerase OS=Buchnera aphidicola s... [more]
TPIS_AYWBP3.570e-1130.89Triosephosphate isomerase OS=Aster yellows witches... [more]
TPIS_XANOP4.663e-1130.89Triosephosphate isomerase OS=Xanthomonas oryzae pv... [more]

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Properties
Property NameValue
Genbank descriptionC32001D11EF DevOvary1 Citrus clementina cDNA clone C32001D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876189 ID=FC876189; Name=FC876189; organism=Citrus clementina; type=EST; length=678bp
TCGCCGGGGGGAAACCACAACGTGACCCTTCGTCCCACCCTCTCCACCAA
CCAAACACACATACACAAAGGCTGAGCAAGAGCAAGAGCAAGAGCCAAAG
CAGCTGAGATTATAATTTGACTTTCACTTTGACTTTTCACAATGGCGTCA
ATGGTCTCCACAAACTGCGCTCAATTCTCCGGCCTGCGCCGCTCATCGCC
CACACAGTCTTTTTCACAGCACGTCAACTCTCACCTCCGCCTCTTCTCTT
CTCGTAGACCTCGCCGCGGCAGCAGCGTTGTCGCCATGGCCAGCTCCAAC
AAGTTCTTTGTTGGGGGAAACTGGAAGTGTAATGGAACAAAGGAATCTAT
CACCAAGCTTGTTTCGGACCTGAACGATGCAAAGTTGGAGGCAGATGTTG
ATGTTGTGGTAGCGCCTCCCTTTGTTTACATTGATCAAGTGAAGAATTCA
TTAACAGATAGAATTGAGATAGCAGCTCAGAACTCTTGGGTCGGAAAAGG
TGGAGCATTTACAGGAGAAATCAGTGTGGAACAACTGAAAGATATTGGCT
GCAAGTGGGTTGTTCTGGGGCATTCTGAGCGCAGACATGTTATTGGTGAA
GATGATCAGTTTATAGGGAAGAAAGCTGCCTATGCCTTGAGCGAGGGACT
TGGTGTAATAGCTTGTATCGGGGAACAG
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