FC876189

Overview
NameFC876189
Unique NameFC876189
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_XANOM (Triosephosphate isomerase OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=tpiA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.663e-11
Identity = 38/123 (30.89%), Postives = 62/123 (50.41%), Query Frame = 1
Query:  310 VGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYI-DQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            V GNWK +G++   T+LV+ L                  Y+ D +++     +   AQ+    + GA+TGE+S   L D+G  + ++GHSERR    E  + + +K A A+  GL  + C+GE
Sbjct:    6 VAGNWKLHGSRAFATELVAKLAAHMPLEGIDVVILPPLPYLGDLIEDFEAHHLSFGAQDVSSNEKGAYTGEVSASMLVDVGAGYGLVGHSERRQYHQESSELVARKFAAAIHAGLTPVLCVGE 128          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_SYNP2 (Triosephosphate isomerase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=tpiA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.663e-11
Identity = 43/134 (32.09%), Postives = 64/134 (47.76%), Query Frame = 1
Query:  301 KFFVGGNWKCNGT--------KESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTD-RIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            K  + GNWK   T        K  + K+  D  + ++           F  +  +  SL   R+ + AQN      GAFTGEIS   L ++G ++V++GHSERR   GE D+ + ++   A   GL  I C+GE
Sbjct:    3 KIIIAGNWKMYKTQAESLDFLKALLPKIADDHEEREV------VLCTPFTDLGLMSKSLHGTRVRLGAQNIHWADEGAFTGEISGSMLTEMGVRYVIVGHSERRQYFGETDETVNQRLKAAQRHGLTPILCVGE 130          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_STRSY (Triosephosphate isomerase OS=Streptococcus suis (strain 05ZYH33) GN=tpiA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.663e-11
Identity = 45/132 (34.09%), Postives = 61/132 (46.21%), Query Frame = 1
Query:  295 SNKFFVGGNWKCNGTKESITKLVSDLNDA-----KLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            S K  + GNWK N   +     V  +        K+E             +   K+S    +++AAQN +    GAFTGE S + L ++G  +VV+GHSERR    E D+ I KKA      GL  I C GE
Sbjct:    2 SRKPIIAGNWKMNKNPQEAQAFVEAIAGKLPAGDKIEAAIAAPAVDLNALLWFAKDS---ELKVAAQNCYFEDAGAFTGETSPKVLAEMGVNYVVIGHSERRDYFHETDEDINKKAHAIFRNGLTPIICCGE 130          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_STRS2 (Triosephosphate isomerase OS=Streptococcus suis (strain 98HAH33) GN=tpiA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.663e-11
Identity = 45/132 (34.09%), Postives = 61/132 (46.21%), Query Frame = 1
Query:  295 SNKFFVGGNWKCNGTKESITKLVSDLNDA-----KLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            S K  + GNWK N   +     V  +        K+E             +   K+S    +++AAQN +    GAFTGE S + L ++G  +VV+GHSERR    E D+ I KKA      GL  I C GE
Sbjct:    2 SRKPIIAGNWKMNKNPQEAQAFVEAIAGKLPAGDKIEAAIAAPAVDLNALLWFAKDS---ELKVAAQNCYFEDAGAFTGETSPKVLAEMGVNYVVIGHSERRDYFHETDEDINKKAHAIFRNGLTPIICCGE 130          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_RALEH (Triosephosphate isomerase OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=tpiA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.663e-11
Identity = 40/121 (33.06%), Postives = 61/121 (50.41%), Query Frame = 1
Query:  316 GNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLT-DRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            GNWK +G+  +   L+  +     +          F Y+ Q +  L   ++   AQ+      GAFTGE+S   + + GC +V++GHSERR   GE DQ +  KA  AL  G+  + C+GE
Sbjct:    8 GNWKMHGSLAANAALLEGIKAGAAKATLAVCAP--FPYLAQCQALLNGSQVAWGAQDVSAEARGAFTGEVSASMVGEFGCTYVLVGHSERRTYHGETDQTVAAKALRALEFGIVPVVCVGE 126          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_PSYA2 (Triosephosphate isomerase OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=tpiA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.663e-11
Identity = 44/140 (31.43%), Postives = 69/140 (49.29%), Query Frame = 1
Query:  307 FVGGNWKCNG--------------TKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQ---NSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            +V GNWK N               T  S TK +S  N  + +          F+++  V + L D   + A    +++    GA+TG+ S +Q+ D+G  W +LGHSERR    E +  + +K  +AL++ LGV+ CIGE
Sbjct:    4 WVIGNWKQNPATSHDVDALLNELCTAISTTKQLSHNNSTRCQIMVAPS----FLHLAAVSSRLKDTSVLCAAQDVSAYSASVGAYTGDCSAQQIADVGATWTILGHSERRQYHQESNDTLLQKMTHALTQELGVVFCIGE 139          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_PROAC (Triosephosphate isomerase OS=Propionibacterium acnes GN=tpiA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.663e-11
Identity = 45/131 (34.35%), Postives = 63/131 (48.09%), Query Frame = 1
Query:  310 VGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLT-------DRIEIA--AQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            + GNWK N    + T LV DL +A L+           V I    +          D++ IA  AQ+      GA+TGE+S   L  +GC++VV+GHSERR    E D+ +  KA   +  G+  I C GE
Sbjct:    7 MAGNWKMNLDHVAATSLVQDLGEA-LKAAGYDSSKSEAVVIPPFTDIRPVAIIIDGDKLPIAYGAQDISAHDDGAYTGEVSGAMLSKLGCRYVVVGHSERREYHNESDELVNAKAKKVIENGMTPIICCGE 136          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_ONYPE (Triosephosphate isomerase OS=Onion yellows phytoplasma GN=tpiA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.663e-11
Identity = 38/123 (30.89%), Postives = 57/123 (46.34%), Query Frame = 1
Query:  310 VGGNWKCNGTKESITKLVSDLN-DAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            + GNWK    K+   + +  ++     +             +D +       +++ AQN +    GAFTGE+S + L  +G K V+LGHSERR   GE DQ +  K   AL   L    C+GE
Sbjct:   10 IAGNWKMYKCKDEALEFIQKVSLQVPDQTQVQTLIFPQLTLLDSLAQLQGTNLQVGAQNMFYESEGAFTGEVSPQNLLSLGVKHVLLGHSERRTFFGETDQTVNLKLLSALKHKLVPTVCVGE 132          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_MYCTU (Triosephosphate isomerase OS=Mycobacterium tuberculosis GN=tpiA PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.663e-11
Identity = 48/134 (35.82%), Postives = 63/134 (47.01%), Query Frame = 1
Query:  295 SNKFFVGGNWKCNGTKESITKLVSDLNDA---KLEXXXXXXXXXXFVYIDQVKNSLTD----RIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            S K  + GNWK N        LV  +  +   K            F  +  V+ +L D    R+   AQ+      GA+TG++S   L  +GC +VV+GHSERR    EDD  +  KAA AL  GL  I CIGE
Sbjct:    2 SRKPLIAGNWKMNLNHYEAIALVQKIAFSLPDKYYDRVDVAVIPPFTDLRSVQ-TLVDGDKLRLTYGAQDLSPHDSGAYTGDVSGAFLAKLGCSYVVVGHSERRTYHNEDDALVAAKAATALKHGLTPIVCIGE 134          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_MYCTA (Triosephosphate isomerase OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=tpiA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.663e-11
Identity = 48/134 (35.82%), Postives = 63/134 (47.01%), Query Frame = 1
Query:  295 SNKFFVGGNWKCNGTKESITKLVSDLNDA---KLEXXXXXXXXXXFVYIDQVKNSLTD----RIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            S K  + GNWK N        LV  +  +   K            F  +  V+ +L D    R+   AQ+      GA+TG++S   L  +GC +VV+GHSERR    EDD  +  KAA AL  GL  I CIGE
Sbjct:    2 SRKPLIAGNWKMNLNHYEAIALVQKIAFSLPDKYYDRVDVAVIPPFTDLRSVQ-TLVDGDKLRLTYGAQDLSPHDSGAYTGDVSGAFLAKLGCSYVVVGHSERRTYHNEDDALVAAKAATALKHGLTPIVCIGE 134          
The following BLAST results are available for this feature:
BLAST of FC876189 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 483
Match NameE-valueIdentityDescription
TPIS_XANOM4.663e-1130.89Triosephosphate isomerase OS=Xanthomonas oryzae pv... [more]
TPIS_SYNP24.663e-1132.09Triosephosphate isomerase OS=Synechococcus sp. (st... [more]
TPIS_STRSY4.663e-1134.09Triosephosphate isomerase OS=Streptococcus suis (s... [more]
TPIS_STRS24.663e-1134.09Triosephosphate isomerase OS=Streptococcus suis (s... [more]
TPIS_RALEH4.663e-1133.06Triosephosphate isomerase OS=Ralstonia eutropha (s... [more]
TPIS_PSYA24.663e-1131.43Triosephosphate isomerase OS=Psychrobacter arcticu... [more]
TPIS_PROAC4.663e-1134.35Triosephosphate isomerase OS=Propionibacterium acn... [more]
TPIS_ONYPE4.663e-1130.89Triosephosphate isomerase OS=Onion yellows phytopl... [more]
TPIS_MYCTU4.663e-1135.82Triosephosphate isomerase OS=Mycobacterium tubercu... [more]
TPIS_MYCTA4.663e-1135.82Triosephosphate isomerase OS=Mycobacterium tubercu... [more]

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Properties
Property NameValue
Genbank descriptionC32001D11EF DevOvary1 Citrus clementina cDNA clone C32001D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876189 ID=FC876189; Name=FC876189; organism=Citrus clementina; type=EST; length=678bp
TCGCCGGGGGGAAACCACAACGTGACCCTTCGTCCCACCCTCTCCACCAA
CCAAACACACATACACAAAGGCTGAGCAAGAGCAAGAGCAAGAGCCAAAG
CAGCTGAGATTATAATTTGACTTTCACTTTGACTTTTCACAATGGCGTCA
ATGGTCTCCACAAACTGCGCTCAATTCTCCGGCCTGCGCCGCTCATCGCC
CACACAGTCTTTTTCACAGCACGTCAACTCTCACCTCCGCCTCTTCTCTT
CTCGTAGACCTCGCCGCGGCAGCAGCGTTGTCGCCATGGCCAGCTCCAAC
AAGTTCTTTGTTGGGGGAAACTGGAAGTGTAATGGAACAAAGGAATCTAT
CACCAAGCTTGTTTCGGACCTGAACGATGCAAAGTTGGAGGCAGATGTTG
ATGTTGTGGTAGCGCCTCCCTTTGTTTACATTGATCAAGTGAAGAATTCA
TTAACAGATAGAATTGAGATAGCAGCTCAGAACTCTTGGGTCGGAAAAGG
TGGAGCATTTACAGGAGAAATCAGTGTGGAACAACTGAAAGATATTGGCT
GCAAGTGGGTTGTTCTGGGGCATTCTGAGCGCAGACATGTTATTGGTGAA
GATGATCAGTTTATAGGGAAGAAAGCTGCCTATGCCTTGAGCGAGGGACT
TGGTGTAATAGCTTGTATCGGGGAACAG
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