FC876189

Overview
NameFC876189
Unique NameFC876189
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_MYCBP (Triosephosphate isomerase OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=tpiA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.663e-11
Identity = 48/134 (35.82%), Postives = 63/134 (47.01%), Query Frame = 1
Query:  295 SNKFFVGGNWKCNGTKESITKLVSDLNDA---KLEXXXXXXXXXXFVYIDQVKNSLTD----RIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            S K  + GNWK N        LV  +  +   K            F  +  V+ +L D    R+   AQ+      GA+TG++S   L  +GC +VV+GHSERR    EDD  +  KAA AL  GL  I CIGE
Sbjct:    2 SRKPLIAGNWKMNLNHYEAIALVQKIAFSLPDKYYDRVDVAVIPPFTDLRSVQ-TLVDGDKLRLTYGAQDLSPHDSGAYTGDVSGAFLAKLGCSYVVVGHSERRTYHNEDDALVAAKAATALKHGLTPIVCIGE 134          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_MYCBO (Triosephosphate isomerase OS=Mycobacterium bovis GN=tpiA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.663e-11
Identity = 48/134 (35.82%), Postives = 63/134 (47.01%), Query Frame = 1
Query:  295 SNKFFVGGNWKCNGTKESITKLVSDLNDA---KLEXXXXXXXXXXFVYIDQVKNSLTD----RIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            S K  + GNWK N        LV  +  +   K            F  +  V+ +L D    R+   AQ+      GA+TG++S   L  +GC +VV+GHSERR    EDD  +  KAA AL  GL  I CIGE
Sbjct:    2 SRKPLIAGNWKMNLNHYEAIALVQKIAFSLPDKYYDRVDVAVIPPFTDLRSVQ-TLVDGDKLRLTYGAQDLSPHDSGAYTGDVSGAFLAKLGCSYVVVGHSERRTYHNEDDALVAAKAATALKHGLTPIVCIGE 134          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_MORSP (Triosephosphate isomerase OS=Moraxella sp. GN=tpiA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.663e-11
Identity = 46/140 (32.86%), Postives = 65/140 (46.43%), Query Frame = 1
Query:  307 FVGGNWKCN-GTKESITKLVSDL-------------NDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKG---GAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            +V GNWK N  T   +  L+ DL             N A+ +           +++  V   L D   + A     G     GA+TGE S +Q+ D G  W +LGHSERR    E +  + +K  +ALS+ LGV+ CIGE
Sbjct:    4 WVIGNWKQNPATSHDVNALLDDLCAAISTTKQMSHDNSARCQIMVAPS----LIHLAAVNGRLKDTSILCAAQDVSGHSASVGAYTGECSAQQIVDAGATWTILGHSERRQYHQESNDALLQKMIHALSQDLGVVFCIGE 139          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS1_RHILO (Triosephosphate isomerase 1 OS=Rhizobium loti GN=tpiA1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.663e-11
Identity = 45/125 (36.00%), Postives = 59/125 (47.20%), Query Frame = 1
Query:  310 VGGNWKCNGTKESITKLVSDLND--AKLEXXXXXXXXXXFVYIDQVKNSLTDR-IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            V GNWK NGT  S+ +L    N   + L+             +      L+   +    ++    + GA+TG IS E LKD G   V++GHSE R   GEDD  +  KAA A   GL  I CIGE
Sbjct:    9 VAGNWKMNGTSASLNELRMIGNGFMSGLDAETEALVCVPATLLSHAAEILSRTPVHAGGEDCHTKESGAYTGCISAEMLKDAGASHVIVGHSECREQRGEDDATVQAKAAAAWRAGLVAIICIGE 133          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_LEPIN (Triosephosphate isomerase OS=Leptospira interrogans GN=tpiA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.090e-11
Identity = 40/128 (31.25%), Postives = 62/128 (48.44%), Query Frame = 1
Query:  301 KFFVGGNWKCNGTKESITKLVSDLNDA--KLEXXXXXXXXXXFVYIDQVKNSLT-DRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            K  + GNWK N + +    L   + +    +            ++++ V   L    + + AQN +     AFTGE S +QLK+IG K V++GHSERR  +GE + F   K  + L     V+ C+GE
Sbjct:    3 KTIIAGNWKMNLSLKEAVFLAHSIREKIPSISKDKVSMVFPSTLHLENVSKILEGSSVIVGAQNCYHSGLAAFTGETSPDQLKEIGVKVVMVGHSERRQFLGESNFFCNDKIRFLLKNEFTVLYCVGE 130          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_LEPIC (Triosephosphate isomerase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=tpiA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.090e-11
Identity = 40/128 (31.25%), Postives = 62/128 (48.44%), Query Frame = 1
Query:  301 KFFVGGNWKCNGTKESITKLVSDLNDA--KLEXXXXXXXXXXFVYIDQVKNSLT-DRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            K  + GNWK N + +    L   + +    +            ++++ V   L    + + AQN +     AFTGE S +QLK+IG K V++GHSERR  +GE + F   K  + L     V+ C+GE
Sbjct:    3 KTIIAGNWKMNLSLKEAVFLAHSIREKIPSISKDKVSMVFPSTLHLENVSKILEGSSVIVGAQNCYHSGLAAFTGETSPDQLKEIGVKVVMVGHSERRQFLGESNFFCNDKIRFLLKNEFTVLYCVGE 130          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_DEIGD (Triosephosphate isomerase OS=Deinococcus geothermalis (strain DSM 11300) GN=tpiA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.090e-11
Identity = 38/119 (31.93%), Postives = 56/119 (47.06%), Query Frame = 1
Query:  319 NWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            NWK N T        +DL+ A              + +  +  +L   + +  Q+      GA+TGEIS   L+D+G  +V++GHSERR    E D  +  KA  A + GL  I C+GE
Sbjct:    9 NWKMNKTPSEARAWAADLSSALTPGNAELAVLAPAIDLPVLAGALPAGVALGGQDVSRFAAGAYTGEISAAMLRDVGATYVIVGHSERRTYHAETDAVVAAKARQAQAAGLIPIVCVGE 127          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_CYAP7 (Triosephosphate isomerase OS=Cyanothece sp. (strain PCC 7424) GN=tpiA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.090e-11
Identity = 41/128 (32.03%), Postives = 59/128 (46.09%), Query Frame = 1
Query:  301 KFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYID---QVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            K  + GNWK   T+    + V        +            + D     KN    RI++ AQN    + GA+TGEIS   L +IG  +V++GHSERR   G+ D+ +  +   A   GL  I C+GE
Sbjct:    3 KIIIAGNWKMYKTQAEALEFVQVFKSKIEDTDESREIVLCAPFTDLGAMSKNLHGSRIKLGAQNVHWEEAGAYTGEISGAMLTEIGVSYVIVGHSERRQYFGDTDETVNLRVLAAQKYGLIPILCVGE 130          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_BRASO (Triosephosphate isomerase OS=Bradyrhizobium sp. (strain ORS278) GN=tpiA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.090e-11
Identity = 42/127 (33.07%), Postives = 59/127 (46.46%), Query Frame = 1
Query:  310 VGGNWKCNGTKESITKLVSDLNDA-----KLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            + GNWK NG K S  +  + L  A     K +            + ++ +      + + AQ+      GA TG+IS E L D G   V++GHSERR   GE D  + +KA  A   GL  I C+GE
Sbjct:    9 IAGNWKMNGLKASAAEFEAMLAGAAEVTGKADLLVCPPATLLAAFAEKTRGGKA--VAVGAQDCHAKASGAHTGDISAEMLADAGASAVIVGHSERRADHGESDVVVHQKAEAAWRAGLVAIVCVGE 133          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_BARBK (Triosephosphate isomerase OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=tpiA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.090e-11
Identity = 44/133 (33.08%), Postives = 63/133 (47.37%), Query Frame = 1
Query:  286 MASSNKFFVGGNWKCNGTKESITKL--VSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDR-IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            M SS +  + GNWK NGT ES+ +L  ++   D+  +             + +  + L+D  I +  Q+      G  TG+IS   LK+ G   V+LGHSERR    E D  +  K   A   GL  + CIGE
Sbjct:    1 MTSSIRPLLAGNWKMNGTSESLRELRAIASGIDSDRDRCFEALVCVPATLLSRASDILSDENIFLGGQDCHFNDSGPHTGDISACMLKEAGASHVILGHSERRTDYRESDAIVCAKVKAAWRAGLVALICIGE 133          
The following BLAST results are available for this feature:
BLAST of FC876189 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 483
Match NameE-valueIdentityDescription
TPIS_MYCBP4.663e-1135.82Triosephosphate isomerase OS=Mycobacterium bovis (... [more]
TPIS_MYCBO4.663e-1135.82Triosephosphate isomerase OS=Mycobacterium bovis G... [more]
TPIS_MORSP4.663e-1132.86Triosephosphate isomerase OS=Moraxella sp. GN=tpiA... [more]
TPIS1_RHILO4.663e-1136.00Triosephosphate isomerase 1 OS=Rhizobium loti GN=t... [more]
TPIS_LEPIN6.090e-1131.25Triosephosphate isomerase OS=Leptospira interrogan... [more]
TPIS_LEPIC6.090e-1131.25Triosephosphate isomerase OS=Leptospira interrogan... [more]
TPIS_DEIGD6.090e-1131.93Triosephosphate isomerase OS=Deinococcus geotherma... [more]
TPIS_CYAP76.090e-1132.03Triosephosphate isomerase OS=Cyanothece sp. (strai... [more]
TPIS_BRASO6.090e-1133.07Triosephosphate isomerase OS=Bradyrhizobium sp. (s... [more]
TPIS_BARBK6.090e-1133.08Triosephosphate isomerase OS=Bartonella bacillifor... [more]

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Properties
Property NameValue
Genbank descriptionC32001D11EF DevOvary1 Citrus clementina cDNA clone C32001D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876189 ID=FC876189; Name=FC876189; organism=Citrus clementina; type=EST; length=678bp
TCGCCGGGGGGAAACCACAACGTGACCCTTCGTCCCACCCTCTCCACCAA
CCAAACACACATACACAAAGGCTGAGCAAGAGCAAGAGCAAGAGCCAAAG
CAGCTGAGATTATAATTTGACTTTCACTTTGACTTTTCACAATGGCGTCA
ATGGTCTCCACAAACTGCGCTCAATTCTCCGGCCTGCGCCGCTCATCGCC
CACACAGTCTTTTTCACAGCACGTCAACTCTCACCTCCGCCTCTTCTCTT
CTCGTAGACCTCGCCGCGGCAGCAGCGTTGTCGCCATGGCCAGCTCCAAC
AAGTTCTTTGTTGGGGGAAACTGGAAGTGTAATGGAACAAAGGAATCTAT
CACCAAGCTTGTTTCGGACCTGAACGATGCAAAGTTGGAGGCAGATGTTG
ATGTTGTGGTAGCGCCTCCCTTTGTTTACATTGATCAAGTGAAGAATTCA
TTAACAGATAGAATTGAGATAGCAGCTCAGAACTCTTGGGTCGGAAAAGG
TGGAGCATTTACAGGAGAAATCAGTGTGGAACAACTGAAAGATATTGGCT
GCAAGTGGGTTGTTCTGGGGCATTCTGAGCGCAGACATGTTATTGGTGAA
GATGATCAGTTTATAGGGAAGAAAGCTGCCTATGCCTTGAGCGAGGGACT
TGGTGTAATAGCTTGTATCGGGGAACAG
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