FC876189

Overview
NameFC876189
Unique NameFC876189
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS2_RHIME (Triosephosphate isomerase 2 OS=Rhizobium meliloti GN=tpiA2 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.090e-11
Identity = 48/132 (36.36%), Postives = 62/132 (46.97%), Query Frame = 1
Query:  292 SSNKFFVGGNWKCNGTKESITKLVSDL---NDAKLEXXXXXXXXXXFVYIDQVKNSL-TDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            S +  +VG +WK N T          L   +DA+ +          F    QVK  L    +++ AQN      GA+TGEIS   L D     V LGHSERR   GE D+ +G K A A+  GL  + CIGE
Sbjct:    2 SKSGLWVGTSWKMNKTLAEAMVFADGLAAADDAR-DQRIQRFVIPPFTAARQVKERLKATSVKVGAQNMHWDDAGAWTGEISPVMLSDCDLDIVELGHSERREHFGETDRTVGLKTAAAVKHGLVPLICIGE 132          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS2_BRUME (Triosephosphate isomerase 2 OS=Brucella melitensis GN=tpiA2 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.090e-11
Identity = 45/128 (35.16%), Postives = 60/128 (46.88%), Query Frame = 1
Query:  301 KFFVGGNWKCNGTKESITKLVSDLN--DAKLEXXXXXXXXXXFVYIDQVKNSLTDR-IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            KF++G +WK N T          L   DA             F  + +VK  L+   +++ AQN      G +TGEIS   LKD     V LGHSERR   GE ++ +G K   A+  GL  + CIGE
Sbjct:    3 KFWIGTSWKMNKTLAEARLFAEALKAADAGRSPDIQRFVIPPFTAVREVKEILSGTSVKVGAQNMHWADQGTWTGEISPLMLKDCNLDIVELGHSERREHFGETNETVGLKVEAAVRHGLIPLICIGE 130          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_XYLFM (Triosephosphate isomerase OS=Xylella fastidiosa (strain M12) GN=tpiA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.954e-11
Identity = 40/123 (32.52%), Postives = 60/123 (48.78%), Query Frame = 1
Query:  310 VGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYI-DQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            V GNWK +G+      LV+ +                 +Y+ D  +    + +   AQN      GA+TGE+S   + D+G  + ++GHSERR    ED + + +K A ALS GL  I C+GE
Sbjct:    6 VVGNWKLHGSHAFAQALVAQVAAGLPLPGVSVIILPPLLYLSDLTQRFKGEGLAFGAQNVSHHDKGAYTGEVSAAMVADVGAHYTLVGHSERREYHHEDSELVARKFAAALSAGLRPILCVGE 128          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_LACLS (Triosephosphate isomerase OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=tpiA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.954e-11
Identity = 41/134 (30.60%), Postives = 63/134 (47.01%), Query Frame = 1
Query:  295 SNKFFVGGNWKCNGTK-------ESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            S K  + GNWK N T        E++   +   ++ +              Y+ Q        +++AA+NS+    GAFTGE S   + D+G +++++GHSERR    E D+ I KKA    + G   I C GE
Sbjct:    2 SRKPIIAGNWKMNKTLSEAQAFVEAVKNNLPSSDNVESVIGAPALFLAPMAYLRQ-----GSELKLAAENSYFENAGAFTGENSPAAIVDLGVEYIIIGHSERREYFHETDEDINKKAKAIFAAGATPILCCGE 130          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_LACLM (Triosephosphate isomerase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=tpiA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.954e-11
Identity = 41/134 (30.60%), Postives = 63/134 (47.01%), Query Frame = 1
Query:  295 SNKFFVGGNWKCNGTK-------ESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            S K  + GNWK N T        E++   +   ++ +              Y+ Q        +++AA+NS+    GAFTGE S   + D+G +++++GHSERR    E D+ I KKA    + G   I C GE
Sbjct:    2 SRKPIIAGNWKMNKTLSEAQAFVEAVKNNLPSSDNVESVIGAPALFLAPMAYLRQ-----GSELKLAAENSYFENAGAFTGENSPAAIVDLGIEYIIIGHSERREYFHETDEDINKKAKAIFAAGATPILCCGE 130          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_LACLA (Triosephosphate isomerase OS=Lactococcus lactis subsp. lactis GN=tpiA PE=1 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 7.954e-11
Identity = 41/134 (30.60%), Postives = 63/134 (47.01%), Query Frame = 1
Query:  295 SNKFFVGGNWKCNGTK-------ESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            S K  + GNWK N T        E++   +   ++ +              Y+ Q        +++AA+NS+    GAFTGE S   + D+G +++++GHSERR    E D+ I KKA    + G   I C GE
Sbjct:    2 SRKPIIAGNWKMNKTLSEAQAFVEAVKNNLPSSDNVESVIGAPALFLAPMAYLRQ-----GSELKLAAENSYFENAGAFTGENSPAAIVDLGVEYIIIGHSERREYFHETDEDINKKAKAIFAAGATPILCCGE 130          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_ENTFA (Triosephosphate isomerase OS=Enterococcus faecalis GN=tpiA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.954e-11
Identity = 41/127 (32.28%), Postives = 61/127 (48.03%), Query Frame = 1
Query:  301 KFFVGGNWKCNGTKESITKLVSDLNDA-KLEXXXXXXXXXXFVYIDQVKNSLTD-RIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            K  + GNWK N T          + +A               +++  +  +L D  +++AAQN +    GAFTGE S   + D+G  +V++GHSERR    E D+ I KKA    + G+  I C GE
Sbjct:    3 KPIIAGNWKMNKTLSEAQSFAEAVKNAVPSNDVVDAVIGSPALFLAPLAWNLKDSEVKLAAQNCYWENAGAFTGENSPAAIADLGVDYVIIGHSERREYFHETDEDINKKAKAIFANGMTPIFCCGE 129          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_CHLPB (Triosephosphate isomerase OS=Chlorobium phaeobacteroides (strain BS1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.954e-11
Identity = 42/130 (32.31%), Postives = 66/130 (50.77%), Query Frame = 1
Query:  301 KFFVGGNWKCN-GTKESI---TKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDR-IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            K  V GNWK N    E +   + ++ +L+  K+           +  + +V   +    I + AQN      GA+TGE+SV  L  +GC ++++GHSERR   GE ++ +  +   AL  G+ VI CIGE
Sbjct:    3 KKIVVGNWKMNKNVAEGVALASSILENLDGGKMACEVGIAPA--YPVLSEVGRVIEGSDICLVAQNCHYEDEGAYTGEVSVRMLDSLGCSYIIVGHSERRQYFGETNRTVNLRLKKALEGGMRVILCIGE 130          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_BARQU (Triosephosphate isomerase OS=Bartonella quintana GN=tpiA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.954e-11
Identity = 41/133 (30.83%), Postives = 66/133 (49.62%), Query Frame = 1
Query:  286 MASSNKFFVGGNWKCNGTKESITKL--VSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLT-DRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            M+ + + F+ GNWK NGT ES+ +L  ++    + L              + +  ++L+ + + +  QN      G +TG+IS   LK+ G   V++GHSERR V  E D  +  K   A   GL  + C+GE
Sbjct:    1 MSPNIRPFIAGNWKMNGTVESLGELRAIAAGVSSDLGHLFEALICVPATLLSRASDALSGENLLLGGQNCHFDDCGPYTGDISAFMLKEAGASHVIIGHSERRTVYQESDAIVCAKVQAAWRAGLVALICVGE 133          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_BACSK (Triosephosphate isomerase OS=Bacillus clausii (strain KSM-K16) GN=tpiA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.954e-11
Identity = 40/127 (31.50%), Postives = 62/127 (48.82%), Query Frame = 1
Query:  301 KFFVGGNWKCNGTKESITKLVSDLN-DAKLEXXXXXXXXXXFVYIDQVKNSLTD-RIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            K  + GNWK N T       V  +  +   +           +++D++  ++    ++I AQ       GAFTGEIS + L D+G  +V++GHSERR +  E D+ + KK   A +  L  I C GE
Sbjct:    3 KPIIAGNWKMNKTIGEAVDFVEAVKANVPAQATVDSVVCAPALFLDRLLQAVKGTELKIGAQTMHFEDNGAFTGEISPKALSDMGVHYVIIGHSERREMFAETDETVNKKVHAAFAHHLVPIMCCGE 129          
The following BLAST results are available for this feature:
BLAST of FC876189 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 483
Match NameE-valueIdentityDescription
TPIS2_RHIME6.090e-1136.36Triosephosphate isomerase 2 OS=Rhizobium meliloti ... [more]
TPIS2_BRUME6.090e-1135.16Triosephosphate isomerase 2 OS=Brucella melitensis... [more]
TPIS_XYLFM7.954e-1132.52Triosephosphate isomerase OS=Xylella fastidiosa (s... [more]
TPIS_LACLS7.954e-1130.60Triosephosphate isomerase OS=Lactococcus lactis su... [more]
TPIS_LACLM7.954e-1130.60Triosephosphate isomerase OS=Lactococcus lactis su... [more]
TPIS_LACLA7.954e-1130.60Triosephosphate isomerase OS=Lactococcus lactis su... [more]
TPIS_ENTFA7.954e-1132.28Triosephosphate isomerase OS=Enterococcus faecalis... [more]
TPIS_CHLPB7.954e-1132.31Triosephosphate isomerase OS=Chlorobium phaeobacte... [more]
TPIS_BARQU7.954e-1130.83Triosephosphate isomerase OS=Bartonella quintana G... [more]
TPIS_BACSK7.954e-1131.50Triosephosphate isomerase OS=Bacillus clausii (str... [more]

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Properties
Property NameValue
Genbank descriptionC32001D11EF DevOvary1 Citrus clementina cDNA clone C32001D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876189 ID=FC876189; Name=FC876189; organism=Citrus clementina; type=EST; length=678bp
TCGCCGGGGGGAAACCACAACGTGACCCTTCGTCCCACCCTCTCCACCAA
CCAAACACACATACACAAAGGCTGAGCAAGAGCAAGAGCAAGAGCCAAAG
CAGCTGAGATTATAATTTGACTTTCACTTTGACTTTTCACAATGGCGTCA
ATGGTCTCCACAAACTGCGCTCAATTCTCCGGCCTGCGCCGCTCATCGCC
CACACAGTCTTTTTCACAGCACGTCAACTCTCACCTCCGCCTCTTCTCTT
CTCGTAGACCTCGCCGCGGCAGCAGCGTTGTCGCCATGGCCAGCTCCAAC
AAGTTCTTTGTTGGGGGAAACTGGAAGTGTAATGGAACAAAGGAATCTAT
CACCAAGCTTGTTTCGGACCTGAACGATGCAAAGTTGGAGGCAGATGTTG
ATGTTGTGGTAGCGCCTCCCTTTGTTTACATTGATCAAGTGAAGAATTCA
TTAACAGATAGAATTGAGATAGCAGCTCAGAACTCTTGGGTCGGAAAAGG
TGGAGCATTTACAGGAGAAATCAGTGTGGAACAACTGAAAGATATTGGCT
GCAAGTGGGTTGTTCTGGGGCATTCTGAGCGCAGACATGTTATTGGTGAA
GATGATCAGTTTATAGGGAAGAAAGCTGCCTATGCCTTGAGCGAGGGACT
TGGTGTAATAGCTTGTATCGGGGAACAG
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