FC876189

Overview
NameFC876189
Unique NameFC876189
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10307 contig Ccv1_Contig10307:1..678. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_AZOPC (Triosephosphate isomerase OS=Azobacteroides pseudotrichonymphae genomovar. CFP2 GN=tpiA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.954e-11
Identity = 44/128 (34.38%), Postives = 64/128 (50.00%), Query Frame = 1
Query:  301 KFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXX--FVYIDQVKNSLTDRI-EIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            K  V GNWK N T +    L  +L  A  E            F ++  +  ++  +I ++ AQN+     GA+TGE+S   +  IG ++V+LGHSERR   GE +  + +K   AL   L  I CIGE
Sbjct:    3 KNIVVGNWKMNKTLQEGVFLAKELELALKERKVNCDVIICVPFTHLVAIFETINTKIVKLGAQNNADRVSGAYTGEVSAAMIASIGVQYVILGHSERRAYYGETNIILKEKVKMALENNLIPIFCIGE 130          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_ANAVT (Triosephosphate isomerase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=tpiA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.954e-11
Identity = 40/128 (31.25%), Postives = 61/128 (47.66%), Query Frame = 1
Query:  301 KFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLT---DRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            K  + GNWK   T+    + + +   A  E            + D    S +     +++ AQN    + GA+TGEIS   L +IG ++V++GHSERR   GE D+ +  +   A   GL  I C+GE
Sbjct:    3 KIVIAGNWKMFKTQAESQEFLKEFLPALEETPQEREVLLCVPFTDLAILSQSLHGSLVQLGAQNVHWAENGAYTGEISGPMLTEIGVRYVIVGHSERRQFFGETDETVNLRLQAAQKYGLTPILCVGE 130          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_ANASP (Triosephosphate isomerase OS=Anabaena sp. (strain PCC 7120) GN=tpiA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.954e-11
Identity = 40/128 (31.25%), Postives = 61/128 (47.66%), Query Frame = 1
Query:  301 KFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLT---DRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            K  + GNWK   T+    + + +   A  E            + D    S +     +++ AQN    + GA+TGEIS   L +IG ++V++GHSERR   GE D+ +  +   A   GL  I C+GE
Sbjct:    3 KIVIAGNWKMFKTQAESQEFLKEFLPALEETPQEREVLLCVPFTDLAILSQSLHGSLVQLGAQNVHWAENGAYTGEISGPMLTEIGVRYVIVGHSERRQFFGETDETVNLRLQAAQKYGLTPILCVGE 130          
The following BLAST results are available for this feature:
BLAST of FC876189 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 483
Match NameE-valueIdentityDescription
TPIS_AZOPC7.954e-1134.38Triosephosphate isomerase OS=Azobacteroides pseudo... [more]
TPIS_ANAVT7.954e-1131.25Triosephosphate isomerase OS=Anabaena variabilis (... [more]
TPIS_ANASP7.954e-1131.25Triosephosphate isomerase OS=Anabaena sp. (strain ... [more]

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Properties
Property NameValue
Genbank descriptionC32001D11EF DevOvary1 Citrus clementina cDNA clone C32001D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876189 ID=FC876189; Name=FC876189; organism=Citrus clementina; type=EST; length=678bp
TCGCCGGGGGGAAACCACAACGTGACCCTTCGTCCCACCCTCTCCACCAA
CCAAACACACATACACAAAGGCTGAGCAAGAGCAAGAGCAAGAGCCAAAG
CAGCTGAGATTATAATTTGACTTTCACTTTGACTTTTCACAATGGCGTCA
ATGGTCTCCACAAACTGCGCTCAATTCTCCGGCCTGCGCCGCTCATCGCC
CACACAGTCTTTTTCACAGCACGTCAACTCTCACCTCCGCCTCTTCTCTT
CTCGTAGACCTCGCCGCGGCAGCAGCGTTGTCGCCATGGCCAGCTCCAAC
AAGTTCTTTGTTGGGGGAAACTGGAAGTGTAATGGAACAAAGGAATCTAT
CACCAAGCTTGTTTCGGACCTGAACGATGCAAAGTTGGAGGCAGATGTTG
ATGTTGTGGTAGCGCCTCCCTTTGTTTACATTGATCAAGTGAAGAATTCA
TTAACAGATAGAATTGAGATAGCAGCTCAGAACTCTTGGGTCGGAAAAGG
TGGAGCATTTACAGGAGAAATCAGTGTGGAACAACTGAAAGATATTGGCT
GCAAGTGGGTTGTTCTGGGGCATTCTGAGCGCAGACATGTTATTGGTGAA
GATGATCAGTTTATAGGGAAGAAAGCTGCCTATGCCTTGAGCGAGGGACT
TGGTGTAATAGCTTGTATCGGGGAACAG
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