FC876189

Overview
NameFC876189
Unique NameFC876189
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_LAWIP (Triosephosphate isomerase OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=tpiA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.889e-20
Identity = 57/130 (43.85%), Postives = 72/130 (55.38%), Query Frame = 1
Query:  301 KFFVGGNWKCNGT----KESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDR-IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            K  +  NWK N      K+ I KL+S      +           F+ ID +K  L +  I I AQN +    GAFTGEIS+E LKD+GC WV++GHSERRH+IGE    I +K   ALS G  +I CIGE
Sbjct:    2 KILIAANWKMNKNRLEAKDMIEKLMS--MPEGIPPQRDIVLFPPFLAIDTIKEKLKNSTIVIGAQNFYPAPSGAFTGEISLEMLKDVGCSWVLIGHSERRHIIGELPTLIEQKTKLALSYGFSIILCIGE 129          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_COPC7 (Triosephosphate isomerase OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) GN=TPI PE=3 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 1.889e-20
Identity = 54/128 (42.19%), Postives = 73/128 (57.03%), Query Frame = 1
Query:  295 SNKFFVGGNWKCNGTKESITK-LVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            +  FFVGGNWK N T  S  K LV  LN A L+           +Y+  ++      +++AAQN++  + GAFTGEIS +Q+ D G  +V+LGHSERR +  E  + +  K   AL  GL VI CIGE
Sbjct:    2 TRSFFVGGNWKLNPTSLSAAKALVEALNKADLDPSTEVVVAPPALYLLPIQEIAGKAVKVAAQNAYFKESGAFTGEISPKQISDAGIPYVILGHSERRTLFHETSEVVALKTRAALDNGLKVILCIGE 129          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_PSEU5 (Triosephosphate isomerase OS=Pseudomonas stutzeri (strain A1501) GN=tpiA PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.208e-20
Identity = 49/124 (39.52%), Postives = 75/124 (60.48%), Query Frame = 1
Query:  310 VGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTD-RIEIAAQNSWVGKG-GAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            V GNWK NGT+ S+ +L+       L           FV++ QV + +   ++ + AQ+  +  G GA TGE+S +QL D+GC+WV++GHSERR V+GE D+ + +K A A + GL  + C+GE
Sbjct:    6 VAGNWKMNGTRASVAELIESFRRQALPAAVEIAVFPSFVHVSQVLDVVDGVQVSVGAQDCALQSGFGALTGEVSADQLVDLGCEWVLVGHSERRLVLGETDEVVSQKFAAAQAGGLKPVLCLGE 129          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_ANOME (Triosephosphate isomerase (Fragment) OS=Anopheles merus GN=Tpi PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.208e-20
Identity = 52/110 (47.27%), Postives = 67/110 (60.91%), Query Frame = 1
Query:  346 SITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            SIT+L   L+   L+            Y+   ++ L + I +AAQN +    GAFTGEIS   LKD+G  WV+LGHSERR + GE D+ I +K A+AL EGL VIACIGE
Sbjct:    1 SITELCKTLSAGPLDPNTEVVVGCPAPYLSLARSLLPETIGVAAQNCYKVAKGAFTGEISPAMLKDLGLGWVILGHSERRAIFGETDELIAEKVAHALGEGLKVIACIGE 110          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_SCHPO (Triosephosphate isomerase OS=Schizosaccharomyces pombe GN=tpi1 PE=1 SV=4)

HSP 1 Score: 97.8265 bits (242), Expect = 5.495e-20
Identity = 51/128 (39.84%), Postives = 73/128 (57.03%), Query Frame = 1
Query:  295 SNKFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXF-VYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            + KFFVGGN+K NG+ ES+  ++  LN  KL             +Y+   +  +   I + AQN +  K GA+TGE S + L D G  + + GHSERR +  E D+F+  K  +AL +GL V+ACIGE
Sbjct:    2 ARKFFVGGNFKMNGSLESMKTIIEGLNTTKLNVGDVETVIFPQNMYLITTRQQVKKDIGVGAQNVFDKKNGAYTGENSAQSLIDAGITYTLTGHSERRTIFKESDEFVADKTKFALEQGLTVVACIGE 129          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_PSEPG (Triosephosphate isomerase OS=Pseudomonas putida (strain GB-1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.224e-19
Identity = 53/124 (42.74%), Postives = 77/124 (62.10%), Query Frame = 1
Query:  310 VGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDR-IEIAAQNSWVG-KGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            V GNWK +GT+ S+ +L   L++  L            ++I+QV + L  + I + AQNS V  + GA TGE++ EQL + GCK V++GHSERR VIGE D+ + +K A A ++GL  + CIGE
Sbjct:    6 VAGNWKMHGTRASVAELTEGLSNLALPSGVEVAVFPPALFINQVIDGLAGKEITVGAQNSAVQPEQGALTGEVAPEQLVEAGCKLVLIGHSERRQVIGETDEVLNRKFAAAQAKGLKPVLCIGE 129          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_DICDI (Triosephosphate isomerase OS=Dictyostelium discoideum GN=tpiA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.224e-19
Identity = 51/132 (38.64%), Postives = 77/132 (58.33%), Query Frame = 1
Query:  286 MASSNKFFVGGNWKCNGTKESITKLVSDLNDA-KLEXXXXXXXXXXFVYIDQVKNSLTDR-IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            M  +  FFVGGN K NG+K  +  L   +N++ + +          + Y++ + N L ++  ++ +QN +    GAFTGEIS   L D+G  +V++GHSERR+V  E  + I KK  YA+S GL VI C+GE
Sbjct:    1 MTGTRTFFVGGNHKMNGSKSMLESLSKGMNESVENKENVDIFIAPSYPYLEFLSNKLDNKKFKVCSQNCYSVAKGAFTGEISANMLVDLGIPYVIIGHSERRNVFSESSELITKKTKYAISLGLTVILCLGE 132          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_PSEPK (Triosephosphate isomerase OS=Pseudomonas putida (strain KT2440) GN=tpiA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.599e-19
Identity = 52/124 (41.94%), Postives = 77/124 (62.10%), Query Frame = 1
Query:  310 VGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDR-IEIAAQNSWVG-KGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            V GNWK +GT+ S+ +L   L++  L            ++I+QV + L  + I + AQNS V  + GA TGE++ EQL + GCK V++GHSERR +IGE D+ + +K A A ++GL  + CIGE
Sbjct:    6 VAGNWKMHGTRASVAELTKGLSNLALPSGVEVAVFPPALFINQVIDGLAGKEITVGAQNSAVQPEQGALTGEVAPEQLVEAGCKLVLIGHSERRQIIGETDEVLNRKFAAAQAKGLKPVLCIGE 129          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_PSEP1 (Triosephosphate isomerase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=tpiA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.599e-19
Identity = 52/124 (41.94%), Postives = 77/124 (62.10%), Query Frame = 1
Query:  310 VGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDR-IEIAAQNSWVG-KGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            V GNWK +GT+ S+ +L   L++  L            ++I+QV + L  + I + AQNS V  + GA TGE++ EQL + GCK V++GHSERR +IGE D+ + +K A A ++GL  + CIGE
Sbjct:    6 VAGNWKMHGTRASVAELTKGLSNLALPSGVEVAVFPPALFINQVIDGLAGKEITVGAQNSAVQPEQGALTGEVAPEQLVEAGCKLVLIGHSERRQIIGETDEVLNRKFAAAQAKGLKPVLCIGE 129          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_THICR (Triosephosphate isomerase OS=Thiomicrospira crunogena (strain XCL-2) GN=tpiA PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.088e-19
Identity = 56/128 (43.75%), Postives = 70/128 (54.69%), Query Frame = 1
Query:  301 KFFVGGNWKCNGTKESITKLVSDLN-DAKLEXXXXXXXXXXFVYIDQVKNSL-TDRIEIAAQNSWVGK-GGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            + FV GNWK +G K SI  LV+ LN  A              +Y+D  KN L    I +  QN  +    GA+TGE S   LKD+GC++V+LGHSERR + GE DQ I  K   AL  GL  I C+GE
Sbjct:    3 QLFVAGNWKMHGDKASIKTLVTGLNAKADSVGDVLVAVCPPAIYLDYTKNCLMAGEIALGGQNMAIEPVQGAYTGETSASMLKDVGCQYVILGHSERRAIYGETDQDIAAKVKTALDSGLTPILCVGE 130          
The following BLAST results are available for this feature:
BLAST of FC876189 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 483
Match NameE-valueIdentityDescription
TPIS_LAWIP1.889e-2043.85Triosephosphate isomerase OS=Lawsonia intracellula... [more]
TPIS_COPC71.889e-2042.19Triosephosphate isomerase OS=Coprinopsis cinerea (... [more]
TPIS_PSEU54.208e-2039.52Triosephosphate isomerase OS=Pseudomonas stutzeri ... [more]
TPIS_ANOME4.208e-2047.27Triosephosphate isomerase (Fragment) OS=Anopheles ... [more]
TPIS_SCHPO5.495e-2039.84Triosephosphate isomerase OS=Schizosaccharomyces p... [more]
TPIS_PSEPG1.224e-1942.74Triosephosphate isomerase OS=Pseudomonas putida (s... [more]
TPIS_DICDI1.224e-1938.64Triosephosphate isomerase OS=Dictyostelium discoid... [more]
TPIS_PSEPK1.599e-1941.94Triosephosphate isomerase OS=Pseudomonas putida (s... [more]
TPIS_PSEP11.599e-1941.94Triosephosphate isomerase OS=Pseudomonas putida (s... [more]
TPIS_THICR2.088e-1943.75Triosephosphate isomerase OS=Thiomicrospira crunog... [more]

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Properties
Property NameValue
Genbank descriptionC32001D11EF DevOvary1 Citrus clementina cDNA clone C32001D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876189 ID=FC876189; Name=FC876189; organism=Citrus clementina; type=EST; length=678bp
TCGCCGGGGGGAAACCACAACGTGACCCTTCGTCCCACCCTCTCCACCAA
CCAAACACACATACACAAAGGCTGAGCAAGAGCAAGAGCAAGAGCCAAAG
CAGCTGAGATTATAATTTGACTTTCACTTTGACTTTTCACAATGGCGTCA
ATGGTCTCCACAAACTGCGCTCAATTCTCCGGCCTGCGCCGCTCATCGCC
CACACAGTCTTTTTCACAGCACGTCAACTCTCACCTCCGCCTCTTCTCTT
CTCGTAGACCTCGCCGCGGCAGCAGCGTTGTCGCCATGGCCAGCTCCAAC
AAGTTCTTTGTTGGGGGAAACTGGAAGTGTAATGGAACAAAGGAATCTAT
CACCAAGCTTGTTTCGGACCTGAACGATGCAAAGTTGGAGGCAGATGTTG
ATGTTGTGGTAGCGCCTCCCTTTGTTTACATTGATCAAGTGAAGAATTCA
TTAACAGATAGAATTGAGATAGCAGCTCAGAACTCTTGGGTCGGAAAAGG
TGGAGCATTTACAGGAGAAATCAGTGTGGAACAACTGAAAGATATTGGCT
GCAAGTGGGTTGTTCTGGGGCATTCTGAGCGCAGACATGTTATTGGTGAA
GATGATCAGTTTATAGGGAAGAAAGCTGCCTATGCCTTGAGCGAGGGACT
TGGTGTAATAGCTTGTATCGGGGAACAG
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