FC876189

Overview
NameFC876189
Unique NameFC876189
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10307 contig Ccv1_Contig10307:1..678. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_PSEE4 (Triosephosphate isomerase OS=Pseudomonas entomophila (strain L48) GN=tpiA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.727e-19
Identity = 50/124 (40.32%), Postives = 74/124 (59.68%), Query Frame = 1
Query:  310 VGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDR-IEIAAQNSWVG-KGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            V GNWK +GT+ S+ +L   L +  L            +++ QV + L  + I + AQNS V  + GA TGE++  QL ++GCK+V++GHSERR +IGE D+ + +K A A   GL  + CIGE
Sbjct:    6 VAGNWKMHGTRASVVELTQGLGNMSLPSGVEVAVFPPSLFVTQVIDGLEGKGINVGAQNSAVQPEQGALTGEVAPSQLAEVGCKYVLVGHSERRQIIGESDEVLNQKFAAAQKSGLTPVLCIGE 129          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPI1_GIALA (Triosephosphate isomerase OS=Giardia lamblia PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.727e-19
Identity = 50/124 (40.32%), Postives = 77/124 (62.10%), Query Frame = 1
Query:  307 FVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQ-VKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            F+GGN+KCNG+ + I   V+ +   K+            V++   +  + + ++ IAAQN ++   GA+TGE SVE L+D+G K V++GHSERR ++GE D+   KKA  AL +G+ VI C+GE
Sbjct:    7 FIGGNFKCNGSLDFIKSHVAAIAAHKIPDSVDVVIAPSAVHLSTAIAANTSKQLRIAAQNVYLEGNGAWTGETSVEMLQDMGLKHVIVGHSERRRIMGETDEQSAKKAKRALEKGMTVIFCVGE 130          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_MAGSM (Triosephosphate isomerase OS=Magnetococcus sp. (strain MC-1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.562e-19
Identity = 50/125 (40.00%), Postives = 72/125 (57.60%), Query Frame = 1
Query:  310 VGGNWKCNGTKESITKLVSDLND--AKLEXXXXXXXXXXFVYIDQVKNSLTDR-IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            + GNWK NGT ++ T L + + D  A  +          F  +  V+  +    +++ AQN  V   GAFTGEIS E LKD+GC +V+LGHSERR + GE ++ + +K A A  +GL  I C+GE
Sbjct:    6 IAGNWKLNGTTQAATALATAVRDGVAANKPDCDVLVCPTFTVLSAVQGVVAGSGVDLGAQNMAVASSGAFTGEISGEMLKDVGCSYVILGHSERRTLFGETNEQVAQKVASAYRDGLTPILCVGE 130          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_RUTMC (Triosephosphate isomerase OS=Ruthia magnifica subsp. Calyptogena magnifica GN=tpiA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.935e-19
Identity = 48/126 (38.10%), Postives = 71/126 (56.35%), Query Frame = 1
Query:  301 KFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTD-RIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            +  + GNWK N +KE+   LV  +     +           +Y+ QV+  + D ++ + AQN  V K GAFTGEIS + +KD G K+V++GHSERR + GE D+ + +K   AL   L  + CIGE
Sbjct:    3 QIIIAGNWKMNASKEATNTLVIGILSGMADVKSKVIVCVPSLYMSQVEVLVVDSQLNLGAQNLNVNKLGAFTGEISADMIKDFGAKYVIVGHSERRSLYGETDEIVAQKVQVALDNNLTPLFCIGE 128          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_AEDTO (Triosephosphate isomerase (Fragment) OS=Aedes togoi GN=Tpi PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.935e-19
Identity = 50/110 (45.45%), Postives = 63/110 (57.27%), Query Frame = 1
Query:  346 SITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            SI +L   L    L             Y+   ++ L D + +AAQN +    GAFTGEIS   LKD+   WV+LGHSERR + GE D+ I  K A+AL+EGL VIACIGE
Sbjct:    1 SIAELCKVLTTGPLNADTEVVVGCPAPYLTLARSQLPDSVGVAAQNCYKVAKGAFTGEISPAMLKDLNIGWVILGHSERRAIFGESDELIADKVAHALAEGLKVIACIGE 110          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPI2_GIALA (Triosephosphate isomerase OS=Giardia lamblia PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.935e-19
Identity = 50/124 (40.32%), Postives = 75/124 (60.48%), Query Frame = 1
Query:  307 FVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDR-IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            F+GGN+KCNG+ + I   V+ +   K+           FV++     + T + ++IAAQN ++   GA+TGE SVE L D+G   V++GHSERR ++GE ++   KKA  AL +G+ VI C GE
Sbjct:    7 FIGGNFKCNGSLDFIKSHVASIASYKIPESVDVVVAPSFVHLSTAIAANTSKCLKIAAQNVYLEGNGAWTGETSVEMLLDMGLSHVIIGHSERRRIMGETNEQSAKKAKRALDKGMTVIFCTGE 130          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_HAHCH (Triosephosphate isomerase OS=Hahella chejuensis (strain KCTC 2396) GN=tpiA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.354e-18
Identity = 47/126 (37.30%), Postives = 71/126 (56.35%), Query Frame = 1
Query:  301 KFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDR-IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            K  + GNWK NG+ E    L+  + +AK            F Y+  V+++++D  IE+ +QN    + GA+TGE+S +   D+ C WV+LGHSERR +  E+D+ I  K   A+  GL  I C+GE
Sbjct:    3 KKLIAGNWKSNGSLERNKALLEGIVNAKALGSVDVVVCPPFPYLQSVESAVSDSMIELGSQNCSATEDGAYTGEVSAKMCADMKCSWVILGHSERRALYAENDEVIACKVKRAVESGLAPILCVGE 128          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_PSEPW (Triosephosphate isomerase OS=Pseudomonas putida (strain W619) GN=tpiA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.768e-18
Identity = 49/124 (39.52%), Postives = 75/124 (60.48%), Query Frame = 1
Query:  310 VGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDR-IEIAAQNSWVG-KGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            V GNWK +GT+ S+ +L   L +  +            ++I++V + L  + I + AQNS V  + GA TGE++  QL ++GCK+V++GHSERR VIGE ++ + +K A A   GL  + CIGE
Sbjct:    6 VAGNWKMHGTRASVAELTQGLGNMLIPEGIEVAVFPPALFINEVIDGLKGKGITVGAQNSAVQPEQGALTGEVAPSQLAEVGCKFVLIGHSERRQVIGESEEVLNRKFAAAQKSGLTPVLCIGE 129          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_YERE8 (Triosephosphate isomerase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=tpiA PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.938e-18
Identity = 50/124 (40.32%), Postives = 70/124 (56.45%), Query Frame = 1
Query:  310 VGGNWKCNGTKESITKLVSDLN-DAKLEXXXXXXXXXXFVYIDQVKNSLT-DRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            V GNWK NG+   + +L+++L  +               +Y++Q K+ L+  RI + AQN  V   GAFTGE S E LKDIG +++++GHSERR    E D+FI KK       GL  + CIGE
Sbjct:    6 VMGNWKLNGSTHMVNELIANLRKELSTVEGCGVAIAPPAIYLNQAKHELSGSRIALGAQNVDVNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHKESDEFIAKKFGVLKEVGLTPVLCIGE 129          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_CULPI (Triosephosphate isomerase (Fragment) OS=Culex pipiens GN=Tpi PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.938e-18
Identity = 49/110 (44.55%), Postives = 62/110 (56.36%), Query Frame = 1
Query:  346 SITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            SIT+L   L    L             Y+   ++ L D + +AAQN +    GAFTGEIS   LKD+   WV+LGHSERR + GE  + I  K  +AL+EGL VIACIGE
Sbjct:    1 SITELCKVLTTGPLNADTEVVVGCPAPYLSLARSQLPDTVGVAAQNCYKVAKGAFTGEISPAMLKDLNIGWVILGHSERRAIFGESGELIADKIVHALAEGLKVIACIGE 110          
The following BLAST results are available for this feature:
BLAST of FC876189 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 483
Match NameE-valueIdentityDescription
TPIS_PSEE42.727e-1940.32Triosephosphate isomerase OS=Pseudomonas entomophi... [more]
TPI1_GIALA2.727e-1940.32Triosephosphate isomerase OS=Giardia lamblia PE=1 ... [more]
TPIS_MAGSM3.562e-1940.00Triosephosphate isomerase OS=Magnetococcus sp. (st... [more]
TPIS_RUTMC7.935e-1938.10Triosephosphate isomerase OS=Ruthia magnifica subs... [more]
TPIS_AEDTO7.935e-1945.45Triosephosphate isomerase (Fragment) OS=Aedes togo... [more]
TPI2_GIALA7.935e-1940.32Triosephosphate isomerase OS=Giardia lamblia PE=3 ... [more]
TPIS_HAHCH1.354e-1837.30Triosephosphate isomerase OS=Hahella chejuensis (s... [more]
TPIS_PSEPW1.768e-1839.52Triosephosphate isomerase OS=Pseudomonas putida (s... [more]
TPIS_YERE83.938e-1840.32Triosephosphate isomerase OS=Yersinia enterocoliti... [more]
TPIS_CULPI3.938e-1844.55Triosephosphate isomerase (Fragment) OS=Culex pipi... [more]

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Properties
Property NameValue
Genbank descriptionC32001D11EF DevOvary1 Citrus clementina cDNA clone C32001D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876189 ID=FC876189; Name=FC876189; organism=Citrus clementina; type=EST; length=678bp
TCGCCGGGGGGAAACCACAACGTGACCCTTCGTCCCACCCTCTCCACCAA
CCAAACACACATACACAAAGGCTGAGCAAGAGCAAGAGCAAGAGCCAAAG
CAGCTGAGATTATAATTTGACTTTCACTTTGACTTTTCACAATGGCGTCA
ATGGTCTCCACAAACTGCGCTCAATTCTCCGGCCTGCGCCGCTCATCGCC
CACACAGTCTTTTTCACAGCACGTCAACTCTCACCTCCGCCTCTTCTCTT
CTCGTAGACCTCGCCGCGGCAGCAGCGTTGTCGCCATGGCCAGCTCCAAC
AAGTTCTTTGTTGGGGGAAACTGGAAGTGTAATGGAACAAAGGAATCTAT
CACCAAGCTTGTTTCGGACCTGAACGATGCAAAGTTGGAGGCAGATGTTG
ATGTTGTGGTAGCGCCTCCCTTTGTTTACATTGATCAAGTGAAGAATTCA
TTAACAGATAGAATTGAGATAGCAGCTCAGAACTCTTGGGTCGGAAAAGG
TGGAGCATTTACAGGAGAAATCAGTGTGGAACAACTGAAAGATATTGGCT
GCAAGTGGGTTGTTCTGGGGCATTCTGAGCGCAGACATGTTATTGGTGAA
GATGATCAGTTTATAGGGAAGAAAGCTGCCTATGCCTTGAGCGAGGGACT
TGGTGTAATAGCTTGTATCGGGGAACAG
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