FC876189

Overview
NameFC876189
Unique NameFC876189
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10307 contig Ccv1_Contig10307:1..678. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_ERWCT (Triosephosphate isomerase OS=Erwinia carotovora subsp. atroseptica GN=tpiA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.143e-18
Identity = 51/124 (41.13%), Postives = 67/124 (54.03%), Query Frame = 1
Query:  310 VGGNWKCNGTKESITKLVSDLN-DAKLEXXXXXXXXXXFVYIDQVKNSLT-DRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            V GNWK NG+   + +L++ L  +               +Y+DQ  + L   RI + AQN  V   GAFTGE S E LKDIG K++++GHSERR    E D+FI KK       GL  + CIGE
Sbjct:    6 VMGNWKLNGSTNLVNELIAGLRKELSTVDGCGVAIAPPAIYLDQANHQLAGSRIALGAQNVDVNLSGAFTGETSAEMLKDIGAKYIIIGHSERRTYHKESDEFIAKKFGVLKDAGLIPVLCIGE 129          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_VESOH (Triosephosphate isomerase OS=Vesicomyosocius okutanii subsp. Calyptogena okutanii (strain HA) GN=tpiA PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.718e-18
Identity = 44/123 (35.77%), Postives = 73/123 (59.35%), Query Frame = 1
Query:  310 VGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSL-TDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            + GNWK N +KE+   LV D+    ++          F Y+ QV+  +   ++ + AQ+  + K GAFTGE+SV+ +KD G ++V++GHSERR +  E+++ + +K   AL+  L  + CIGE
Sbjct:    6 IAGNWKMNASKEATNILVMDILSGMVDVKSKVIICVPFPYMAQVEALVGCSQLNLGAQDLNINKSGAFTGEVSVDMIKDFGARYVIVGHSERRSLYFENNEIVAQKVQVALNNNLTPLLCIGE 128          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_PSEAE (Triosephosphate isomerase OS=Pseudomonas aeruginosa GN=tpiA PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.718e-18
Identity = 50/124 (40.32%), Postives = 70/124 (56.45%), Query Frame = 1
Query:  310 VGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDR-IEIAAQNSWVGK-GGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            V GNWK +GT  S+ +L+  L    L            ++I QV   L  + I++ AQNS V    GA TGE +  QL D+GC  V++GHSERR ++GE D+ + +K A A S GL  + C+GE
Sbjct:    6 VAGNWKMHGTHSSVAELIKGLRQLALPSGVDVAVMPPCLFISQVIQGLAGKAIDVGAQNSAVEPMQGALTGETAPSQLADVGCSMVLVGHSERRLILGESDEVVSRKFAAAQSCGLVPVLCVGE 129          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_PSEAB (Triosephosphate isomerase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=tpiA PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.718e-18
Identity = 50/124 (40.32%), Postives = 70/124 (56.45%), Query Frame = 1
Query:  310 VGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDR-IEIAAQNSWVGK-GGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            V GNWK +GT  S+ +L+  L    L            ++I QV   L  + I++ AQNS V    GA TGE +  QL D+GC  V++GHSERR ++GE D+ + +K A A S GL  + C+GE
Sbjct:    6 VAGNWKMHGTHSSVAELIKGLRQLALPSGVDVAVMPPCLFISQVIQGLAGKAIDVGAQNSAVEPMQGALTGETAPSQLADVGCSMVLVGHSERRLILGESDEVVSRKFAAAQSCGLVPVLCVGE 129          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_PSEA8 (Triosephosphate isomerase OS=Pseudomonas aeruginosa (strain LESB58) GN=tpiA PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.718e-18
Identity = 50/124 (40.32%), Postives = 70/124 (56.45%), Query Frame = 1
Query:  310 VGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDR-IEIAAQNSWVGK-GGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            V GNWK +GT  S+ +L+  L    L            ++I QV   L  + I++ AQNS V    GA TGE +  QL D+GC  V++GHSERR ++GE D+ + +K A A S GL  + C+GE
Sbjct:    6 VAGNWKMHGTHSSVAELIKGLRQLALPSGVDVAVMPPCLFISQVIQGLAGKAIDVGAQNSAVEPMQGALTGETAPSQLADVGCSMVLVGHSERRLILGESDEVVSRKFAAAQSCGLVPVLCVGE 129          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_MARAV (Triosephosphate isomerase OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=tpiA PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.773e-18
Identity = 47/124 (37.90%), Postives = 66/124 (53.23%), Query Frame = 1
Query:  310 VGGNWKCNGTKESITKLVSDLND--AKLEXXXXXXXXXXFVYIDQVKNSLTDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            V GNWK NG+K+ + +LV  + +    +            +Y+DQV      RI   AQN    + GA+TGEIS E  +D+GC +V++GHSERR + GE D     K    L  GL  + C+GE
Sbjct:    6 VAGNWKMNGSKDLVKQLVGAVREQSGSVGEDVEVVIIPPAIYLDQVAEQGGGRITTGAQNVSQWQSGAYTGEISAEMARDMGCGYVLVGHSERRQLFGETDSVAAAKVEQVLLSGLVAVLCVGE 129          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_LEGPC (Triosephosphate isomerase OS=Legionella pneumophila (strain Corby) GN=tpiA PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.773e-18
Identity = 47/124 (37.90%), Postives = 71/124 (57.26%), Query Frame = 1
Query:  310 VGGNWKCNGTKESITKLVSDLNDA-KLEXXXXXXXXXXFVYIDQVKNSL-TDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            V GNWK NG  + +T+LVS + +    +           +YI +V++ L T RI + AQN +    GA+TGE+S   LKD  C++V++GHSERR    ED+ F+ +K  +    G+  I C+GE
Sbjct:    6 VAGNWKMNGQIQQVTELVSQIEELIGFDCAAQVAVMPPSIYIPKVRDCLRTGRIVVGAQNVYPKDYGAYTGELSAPMLKDFDCRYVLVGHSERRQFFHEDENFVAQKFHHVKDHGMIPILCVGE 129          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_PSEPF (Triosephosphate isomerase OS=Pseudomonas fluorescens (strain Pf0-1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.146e-17
Identity = 51/124 (41.13%), Postives = 72/124 (58.06%), Query Frame = 1
Query:  310 VGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDR-IEIAAQNSWV-GKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            V GNWK +GT+ S+ +L++ L    L            +YI+QV + L  + I + AQNS V    GA TGEI+  QL D GC  V++GHSERR ++GE D  + +K A A + GL  + C+GE
Sbjct:    6 VAGNWKMHGTRASVAELINGLRHLALPSGVDVAVFPPCLYINQVIDGLKGKSISVGAQNSAVESMQGALTGEIAPSQLVDAGCSLVLVGHSERRQIMGERDGMLNRKFAAAQACGLIPVLCVGE 129          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_PSEF5 (Triosephosphate isomerase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=tpiA PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.146e-17
Identity = 51/124 (41.13%), Postives = 73/124 (58.87%), Query Frame = 1
Query:  310 VGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDR-IEIAAQNSWV-GKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            V GNWK +GT+ S+ +L++ L    L            +YI+QV + L  + I++ AQNS V    GA TGEI+  QL D GC  V++GHSERR ++GE D  + +K A A + GL  + C+GE
Sbjct:    6 VAGNWKMHGTRASVAELINGLRHLALPSGVDVAVFPPCLYINQVIDGLKGKSIQVGAQNSAVESMQGALTGEIAPSQLVDAGCSLVLVGHSERRLIMGERDATLNRKFAAAQACGLKPVLCVGE 129          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_ALKOO (Triosephosphate isomerase OS=Alkaliphilus oremlandii (strain OhILAs) GN=tpiA PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.146e-17
Identity = 48/126 (38.10%), Postives = 67/126 (53.17%), Query Frame = 1
Query:  301 KFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTD-RIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            K  + GNWK N   +    LV+ + D   +          F  + QV+ +L    +++ AQN    + GA+TGEIS   LKDIG ++V+LGHSERR    E D+ + KK   A+ E L  I CIGE
Sbjct:    3 KPIIAGNWKMNKVSKEALDLVNQIKDEVHKTEVEVVVCCPFTVLSQVQKALVGTNLKLGAQNMHWEEDGAYTGEISANMLKDIGVEYVILGHSERRQYFNETDETVNKKVKKAIKENLKPIVCIGE 128          
The following BLAST results are available for this feature:
BLAST of FC876189 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 483
Match NameE-valueIdentityDescription
TPIS_ERWCT5.143e-1841.13Triosephosphate isomerase OS=Erwinia carotovora su... [more]
TPIS_VESOH6.718e-1835.77Triosephosphate isomerase OS=Vesicomyosocius okuta... [more]
TPIS_PSEAE6.718e-1840.32Triosephosphate isomerase OS=Pseudomonas aeruginos... [more]
TPIS_PSEAB6.718e-1840.32Triosephosphate isomerase OS=Pseudomonas aeruginos... [more]
TPIS_PSEA86.718e-1840.32Triosephosphate isomerase OS=Pseudomonas aeruginos... [more]
TPIS_MARAV8.773e-1837.90Triosephosphate isomerase OS=Marinobacter aquaeole... [more]
TPIS_LEGPC8.773e-1837.90Triosephosphate isomerase OS=Legionella pneumophil... [more]
TPIS_PSEPF1.146e-1741.13Triosephosphate isomerase OS=Pseudomonas fluoresce... [more]
TPIS_PSEF51.146e-1741.13Triosephosphate isomerase OS=Pseudomonas fluoresce... [more]
TPIS_ALKOO1.146e-1738.10Triosephosphate isomerase OS=Alkaliphilus oremland... [more]

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Properties
Property NameValue
Genbank descriptionC32001D11EF DevOvary1 Citrus clementina cDNA clone C32001D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876189 ID=FC876189; Name=FC876189; organism=Citrus clementina; type=EST; length=678bp
TCGCCGGGGGGAAACCACAACGTGACCCTTCGTCCCACCCTCTCCACCAA
CCAAACACACATACACAAAGGCTGAGCAAGAGCAAGAGCAAGAGCCAAAG
CAGCTGAGATTATAATTTGACTTTCACTTTGACTTTTCACAATGGCGTCA
ATGGTCTCCACAAACTGCGCTCAATTCTCCGGCCTGCGCCGCTCATCGCC
CACACAGTCTTTTTCACAGCACGTCAACTCTCACCTCCGCCTCTTCTCTT
CTCGTAGACCTCGCCGCGGCAGCAGCGTTGTCGCCATGGCCAGCTCCAAC
AAGTTCTTTGTTGGGGGAAACTGGAAGTGTAATGGAACAAAGGAATCTAT
CACCAAGCTTGTTTCGGACCTGAACGATGCAAAGTTGGAGGCAGATGTTG
ATGTTGTGGTAGCGCCTCCCTTTGTTTACATTGATCAAGTGAAGAATTCA
TTAACAGATAGAATTGAGATAGCAGCTCAGAACTCTTGGGTCGGAAAAGG
TGGAGCATTTACAGGAGAAATCAGTGTGGAACAACTGAAAGATATTGGCT
GCAAGTGGGTTGTTCTGGGGCATTCTGAGCGCAGACATGTTATTGGTGAA
GATGATCAGTTTATAGGGAAGAAAGCTGCCTATGCCTTGAGCGAGGGACT
TGGTGTAATAGCTTGTATCGGGGAACAG
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