FC876189

Overview
NameFC876189
Unique NameFC876189
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10307 contig Ccv1_Contig10307:1..678. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_TREDE (Triosephosphate isomerase OS=Treponema denticola GN=tpiA PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.497e-17
Identity = 48/126 (38.10%), Postives = 67/126 (53.17%), Query Frame = 1
Query:  301 KFFVGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLT-DRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            KF++  NWK N  +    +L +++     +          F  +  V + L    I + AQN  + + GA TGE+SV QL D+G + V+LGHSERRH+  E D  I KK   AL  GL VI C+GE
Sbjct:    3 KFYIAANWKMNMNRAEAKQLATEMKAGLKDGKNKYMIAPSFTLLQDVASVLKGSNILLGAQNMGLEEKGAHTGEVSVLQLLDVGVQAVILGHSERRHIYKETDDLINKKVKLALKHGLEVILCVGE 128          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_SERP5 (Triosephosphate isomerase OS=Serratia proteamaculans (strain 568) GN=tpiA PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.497e-17
Identity = 50/124 (40.32%), Postives = 71/124 (57.26%), Query Frame = 1
Query:  310 VGGNWKCNGTKESITKLVSDL-NDAKLEXXXXXXXXXXFVYIDQVKNSLT-DRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            V GNWK NG+   + +L++ L N+               +Y+DQ K++L   RI + AQN  V   GAFTGE+S + LKDIG +++++GHSERR    E D  I +K A   + GL  + CIGE
Sbjct:    6 VMGNWKLNGSTHMVNELIAALRNELSSVDGCGVAIAPPVMYLDQAKHALAGSRIALGAQNVDVNLSGAFTGEVSADMLKDIGAQYIIIGHSERRTYHKETDAAIAEKFAVLKTAGLIPVLCIGE 129          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_ALISL (Triosephosphate isomerase OS=Aliivibrio salmonicida (strain LFI1238) GN=tpiA PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.497e-17
Identity = 51/127 (40.16%), Postives = 73/127 (57.48%), Query Frame = 1
Query:  310 VGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXX--FVYIDQVKNSLTDR---IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            V GNWK NG+KE +  L++ LN A+LE             ++ID  + +LT+    I + AQNS +   GAFTG++S   LK+ G   +++GHSERR    E D+F+ KK A+    GL  + CIGE
Sbjct:    6 VMGNWKLNGSKEMVVDLLNGLN-AELEGVTGVDVAVAPPALFIDLAERTLTEAGSAIILGAQNSDLNNSGAFTGDMSPAMLKEFGATHIIIGHSERREYHNESDEFVAKKFAFLKENGLTPVLCIGE 131          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_VIBPA (Triosephosphate isomerase OS=Vibrio parahaemolyticus GN=tpiA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.955e-17
Identity = 51/127 (40.16%), Postives = 73/127 (57.48%), Query Frame = 1
Query:  310 VGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXX--FVYIDQVKNSLTD---RIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            V GNWK NG+K  +T+L++ LN A+LE             +YID  +  + +   +I + AQN+ +   GAFTG++S E LKD G   +++GHSERR    E D+FI KK  +    GL  + CIGE
Sbjct:    6 VMGNWKLNGSKAMVTELLTGLN-AELEGVEGVDVAVAPPALYIDLAERLIAEGGNKIILGAQNTDLNNSGAFTGDMSPEMLKDFGATHIIIGHSERREYHNESDEFIAKKFNFLKENGLTPVFCIGE 131          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_RHOBA (Triosephosphate isomerase OS=Rhodopirellula baltica GN=tpiA PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.955e-17
Identity = 48/129 (37.21%), Postives = 70/129 (54.26%), Query Frame = 1
Query:  295 SNKFFVGGNWKCNGTKESITKLVSDLNDAK-LEXXXXXXXXXXFVYIDQVKNSLTDR-IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            S +  + GNWK N   ES   L   + DA               VY+  V +++    +E+ AQN +  + GAFTGE++   L D+GC++V+LGHSERR ++GE D  + KK   AL+  L  I C+GE
Sbjct:    2 SRRILIAGNWKMNMRAESGASLAKGIVDAVGKSPAVEVVLCPPSVYLSGVADAVVGTPVELGAQNLYAAEDGAFTGEVNASMLTDVGCRFVILGHSERRQLMGETDACVAKKLHAALAGNLVPIVCVGE 130          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_VIBFM (Triosephosphate isomerase OS=Vibrio fischeri (strain MJ11) GN=tpiA PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.553e-17
Identity = 49/127 (38.58%), Postives = 74/127 (58.27%), Query Frame = 1
Query:  310 VGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXX--FVYIDQVKNSLTDR---IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            V GNWK NG+KE + +L++ LN A+LE             +++D  + +LT+    I + AQN+ +   GAFTG++S   LK+ G   +++GHSERR    E D+F+ KK A+    GL  + CIGE
Sbjct:    6 VMGNWKLNGSKEMVVELLNGLN-AELEGVTGVDVAVAPPALFVDLAERTLTEAGSAIILGAQNTDLNNSGAFTGDMSPAMLKEFGATHIIIGHSERREYHNESDEFVAKKFAFLKENGLTPVLCIGE 131          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_VIBF1 (Triosephosphate isomerase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=tpiA PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.553e-17
Identity = 49/127 (38.58%), Postives = 74/127 (58.27%), Query Frame = 1
Query:  310 VGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXX--FVYIDQVKNSLTDR---IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            V GNWK NG+KE + +L++ LN A+LE             +++D  + +LT+    I + AQN+ +   GAFTG++S   LK+ G   +++GHSERR    E D+F+ KK A+    GL  + CIGE
Sbjct:    6 VMGNWKLNGSKEMVVELLNGLN-AELEGVTGVDVAVAPPALFVDLAERTLTEAGSAIILGAQNTDLNNSGAFTGDMSPAMLKEFGATHIIIGHSERREYHNESDEFVAKKFAFLKENGLTPVLCIGE 131          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_LEGPH (Triosephosphate isomerase OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=tpiA PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.553e-17
Identity = 45/124 (36.29%), Postives = 71/124 (57.26%), Query Frame = 1
Query:  310 VGGNWKCNGTKESITKLVSDLNDA-KLEXXXXXXXXXXFVYIDQVKNSL-TDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            V GNWK NG  + +T+LVS + +    +           +YI +V++ L T +I + AQN +    GA+TGE+S   LKD  C++V++GHSERR    ED+ F+ +K  +    G+  + C+GE
Sbjct:    6 VAGNWKMNGQIQQVTELVSQIEELIGFDCAAQVAVMPPSIYIPKVRDCLRTGKIVVGAQNVYPKDYGAYTGELSAPMLKDFDCRYVLVGHSERRQFFHEDENFVAQKFHHVKDHGMIPVLCVGE 129          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_LEGPA (Triosephosphate isomerase OS=Legionella pneumophila (strain Paris) GN=tpiA PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.553e-17
Identity = 45/124 (36.29%), Postives = 71/124 (57.26%), Query Frame = 1
Query:  310 VGGNWKCNGTKESITKLVSDLNDA-KLEXXXXXXXXXXFVYIDQVKNSL-TDRIEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            V GNWK NG  + +T+LVS + +    +           +YI +V++ L T ++ + AQN +    GA+TGE+S   LKD  C++V++GHSERR    ED+ F+ +K  +    G+  I C+GE
Sbjct:    6 VAGNWKMNGQIQQVTELVSQIEELIGFDCAAQVAVMPPSIYIPKVRDCLKTGKVVVGAQNVYPKDYGAYTGELSAPMLKDFDCRYVLVGHSERRQFFHEDENFVAQKFHHVKDHGMIPILCVGE 129          
BLAST of FC876189 vs. ExPASy Swiss-Prot
Match: TPIS_AZOSB (Triosephosphate isomerase OS=Azoarcus sp. (strain BH72) GN=tpiA PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.553e-17
Identity = 46/123 (37.40%), Postives = 72/123 (58.54%), Query Frame = 1
Query:  310 VGGNWKCNGTKESITKLVSDLNDAKLEXXXXXXXXXXFVYIDQVKNSLTDR-IEIAAQNSWVGKGGAFTGEISVEQLKDIGCKWVVLGHSERRHVIGEDDQFIGKKAAYALSEGLGVIACIGE 675
            + GNWK NG+      L+ +L  A++           + Y+ Q +  +    IE+ AQ+    + GA+TGE+S   L + GC++V++GHSERR + G+ DQ +G+KAA AL+ GL  I C+GE
Sbjct:    6 IAGNWKLNGSLAKNAALIDELRRAEMHCVVCVP----YPYLAQAQALVAGSLIELGAQDVSEYEQGAYTGEVSAAMLVEFGCRYVIVGHSERRALFGDSDQVVGRKAASALAAGLTPIVCVGE 124          
The following BLAST results are available for this feature:
BLAST of FC876189 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 483
Match NameE-valueIdentityDescription
TPIS_TREDE1.497e-1738.10Triosephosphate isomerase OS=Treponema denticola G... [more]
TPIS_SERP51.497e-1740.32Triosephosphate isomerase OS=Serratia proteamacula... [more]
TPIS_ALISL1.497e-1740.16Triosephosphate isomerase OS=Aliivibrio salmonicid... [more]
TPIS_VIBPA1.955e-1740.16Triosephosphate isomerase OS=Vibrio parahaemolytic... [more]
TPIS_RHOBA1.955e-1737.21Triosephosphate isomerase OS=Rhodopirellula baltic... [more]
TPIS_VIBFM2.553e-1738.58Triosephosphate isomerase OS=Vibrio fischeri (stra... [more]
TPIS_VIBF12.553e-1738.58Triosephosphate isomerase OS=Vibrio fischeri (stra... [more]
TPIS_LEGPH2.553e-1736.29Triosephosphate isomerase OS=Legionella pneumophil... [more]
TPIS_LEGPA2.553e-1736.29Triosephosphate isomerase OS=Legionella pneumophil... [more]
TPIS_AZOSB2.553e-1737.40Triosephosphate isomerase OS=Azoarcus sp. (strain ... [more]

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Properties
Property NameValue
Genbank descriptionC32001D11EF DevOvary1 Citrus clementina cDNA clone C32001D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876189 ID=FC876189; Name=FC876189; organism=Citrus clementina; type=EST; length=678bp
TCGCCGGGGGGAAACCACAACGTGACCCTTCGTCCCACCCTCTCCACCAA
CCAAACACACATACACAAAGGCTGAGCAAGAGCAAGAGCAAGAGCCAAAG
CAGCTGAGATTATAATTTGACTTTCACTTTGACTTTTCACAATGGCGTCA
ATGGTCTCCACAAACTGCGCTCAATTCTCCGGCCTGCGCCGCTCATCGCC
CACACAGTCTTTTTCACAGCACGTCAACTCTCACCTCCGCCTCTTCTCTT
CTCGTAGACCTCGCCGCGGCAGCAGCGTTGTCGCCATGGCCAGCTCCAAC
AAGTTCTTTGTTGGGGGAAACTGGAAGTGTAATGGAACAAAGGAATCTAT
CACCAAGCTTGTTTCGGACCTGAACGATGCAAAGTTGGAGGCAGATGTTG
ATGTTGTGGTAGCGCCTCCCTTTGTTTACATTGATCAAGTGAAGAATTCA
TTAACAGATAGAATTGAGATAGCAGCTCAGAACTCTTGGGTCGGAAAAGG
TGGAGCATTTACAGGAGAAATCAGTGTGGAACAACTGAAAGATATTGGCT
GCAAGTGGGTTGTTCTGGGGCATTCTGAGCGCAGACATGTTATTGGTGAA
GATGATCAGTTTATAGGGAAGAAAGCTGCCTATGCCTTGAGCGAGGGACT
TGGTGTAATAGCTTGTATCGGGGAACAG
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