FC876199
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC876199 vs. ExPASy Swiss-Prot
Match: SCAM6_ORYSJ (Secretory carrier-associated membrane protein 6 OS=Oryza sativa subsp. japonica GN=SCAMP6 PE=2 SV=1) HSP 1 Score: 127.102 bits (318), Expect = 8.384e-29 Identity = 69/171 (40.35%), Postives = 90/171 (52.63%), Query Frame = 1 Query: 172 YDSNPFDEEEV--NPFSDPAVRXXXXXXXXXXXXXXXTTNSASVPPATNSRLSPLPHEPAGFNFER-DAPIDIPXXXXXXXXXXXXXXXXXXXXXRRREQDVRRKEEAAARAGIVLEEKNWPPFSPIIHHDIANEIPIHLQRLQYVAFATYLGLFVCLLWNIVAVTTAWIK 675 +D NPFDE NPFS+ + + P EPAGF R DA +D+P +RRE D++R+EEA AG+ +E+KNWPPF PIIHHDIANEIP +LQ+LQY+AFA++LG+ +CL WN +AV WIK Sbjct: 3 HDPNPFDEGNADDNPFSNGG--------------------GGGGGGGSRQQYGFRPTEPAGFGAGRGDATVDVPLDTMGDSKSKARELSSWETDLKRREADIKRREEALRNAGVPMEDKNWPPFFPIIHHDIANEIPANLQKLQYLAFASWLGIVLCLSWNFIAVIVCWIK 153
BLAST of FC876199 vs. ExPASy Swiss-Prot
Match: SCAM4_ARATH (Secretory carrier-associated membrane protein 4 OS=Arabidopsis thaliana GN=SCAMP4 PE=2 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 1.211e-27 Identity = 66/174 (37.93%), Postives = 92/174 (52.87%), Query Frame = 1 Query: 160 MAGRYDSNPFDEEE--VNPFSDPAVRXXXXXXXXXXXXXXXTTNSASVPPATNSRLSPLPHEPAGFNFERDAPIDIPXXXXXXXXXXXXXXXXXXXXXRRREQDVRRKEEAAARAGIVLEEKNWPPFSPIIHHDIANEIPIHLQRLQYVAFATYLGLFVCLLWNIVAVTTAWIK 675 M +D NPFDE+E VNPFS R VP A+ P + DA +DIP R++E D++R+EEA A+ G+ +++KNWPPF PIIHHDIA EIP+H Q+LQY+AFA++LG+ +CL++N++A WIK Sbjct: 1 MNRHHDPNPFDEDEEIVNPFSKGGGR---------------------VPAAS---------RPVEYGQSLDATVDIPLDNMNDSSQKQRKLADWEAELRKKEMDIKRREEAIAKFGVQIDDKNWPPFFPIIHHDIAKEIPVHAQKLQYLAFASWLGIVLCLVFNVIATMVCWIK 144
BLAST of FC876199 vs. ExPASy Swiss-Prot
Match: SCAM5_ORYSJ (Secretory carrier-associated membrane protein 5 OS=Oryza sativa subsp. japonica GN=SCAMP5 PE=2 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 1.933e-25 Identity = 52/103 (50.49%), Postives = 67/103 (65.05%), Query Frame = 1 Query: 367 APIDIPXXXXXXXXXXXXXXXXXXXXXRRREQDVRRKEEAAARAGIVLEEKNWPPFSPIIHHDIANEIPIHLQRLQYVAFATYLGLFVCLLWNIVAVTTAWIK 675 A +DIP +RRE D+RR+EEA AG+ +EEKNWPPF PIIHHDIANEIP + Q+LQY+AFA++LG+ +CL WN +AV WI+ Sbjct: 59 ATVDIPLDNMSDSKGKGKELLQWEADLKRREADIRRREEALKSAGVPMEEKNWPPFFPIIHHDIANEIPANAQKLQYLAFASWLGIVLCLFWNFIAVIVCWIR 161 The following BLAST results are available for this feature:
BLAST of FC876199 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 13
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Sequences
The
following sequences are available for this feature:
EST sequence >FC876199 ID=FC876199; Name=FC876199; organism=Citrus clementina; type=EST; length=677bpback to top |