FC876199

Overview
NameFC876199
Unique NameFC876199
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC876199_ssr93 microsatellite FC876199_ssr93:93..102. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10310 contig Ccv1_Contig10310:1..682. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876199 vs. ExPASy Swiss-Prot
Match: SCAM6_ORYSJ (Secretory carrier-associated membrane protein 6 OS=Oryza sativa subsp. japonica GN=SCAMP6 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.384e-29
Identity = 69/171 (40.35%), Postives = 90/171 (52.63%), Query Frame = 1
Query:  172 YDSNPFDEEEV--NPFSDPAVRXXXXXXXXXXXXXXXTTNSASVPPATNSRLSPLPHEPAGFNFER-DAPIDIPXXXXXXXXXXXXXXXXXXXXXRRREQDVRRKEEAAARAGIVLEEKNWPPFSPIIHHDIANEIPIHLQRLQYVAFATYLGLFVCLLWNIVAVTTAWIK 675
            +D NPFDE     NPFS+                             +  +    P EPAGF   R DA +D+P                     +RRE D++R+EEA   AG+ +E+KNWPPF PIIHHDIANEIP +LQ+LQY+AFA++LG+ +CL WN +AV   WIK
Sbjct:    3 HDPNPFDEGNADDNPFSNGG--------------------GGGGGGGSRQQYGFRPTEPAGFGAGRGDATVDVPLDTMGDSKSKARELSSWETDLKRREADIKRREEALRNAGVPMEDKNWPPFFPIIHHDIANEIPANLQKLQYLAFASWLGIVLCLSWNFIAVIVCWIK 153          
BLAST of FC876199 vs. ExPASy Swiss-Prot
Match: SCAM4_ARATH (Secretory carrier-associated membrane protein 4 OS=Arabidopsis thaliana GN=SCAMP4 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.211e-27
Identity = 66/174 (37.93%), Postives = 92/174 (52.87%), Query Frame = 1
Query:  160 MAGRYDSNPFDEEE--VNPFSDPAVRXXXXXXXXXXXXXXXTTNSASVPPATNSRLSPLPHEPAGFNFERDAPIDIPXXXXXXXXXXXXXXXXXXXXXRRREQDVRRKEEAAARAGIVLEEKNWPPFSPIIHHDIANEIPIHLQRLQYVAFATYLGLFVCLLWNIVAVTTAWIK 675
            M   +D NPFDE+E  VNPFS    R                     VP A+          P  +    DA +DIP                     R++E D++R+EEA A+ G+ +++KNWPPF PIIHHDIA EIP+H Q+LQY+AFA++LG+ +CL++N++A    WIK
Sbjct:    1 MNRHHDPNPFDEDEEIVNPFSKGGGR---------------------VPAAS---------RPVEYGQSLDATVDIPLDNMNDSSQKQRKLADWEAELRKKEMDIKRREEAIAKFGVQIDDKNWPPFFPIIHHDIAKEIPVHAQKLQYLAFASWLGIVLCLVFNVIATMVCWIK 144          
BLAST of FC876199 vs. ExPASy Swiss-Prot
Match: SCAM5_ORYSJ (Secretory carrier-associated membrane protein 5 OS=Oryza sativa subsp. japonica GN=SCAMP5 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.933e-25
Identity = 52/103 (50.49%), Postives = 67/103 (65.05%), Query Frame = 1
Query:  367 APIDIPXXXXXXXXXXXXXXXXXXXXXRRREQDVRRKEEAAARAGIVLEEKNWPPFSPIIHHDIANEIPIHLQRLQYVAFATYLGLFVCLLWNIVAVTTAWIK 675
            A +DIP                     +RRE D+RR+EEA   AG+ +EEKNWPPF PIIHHDIANEIP + Q+LQY+AFA++LG+ +CL WN +AV   WI+
Sbjct:   59 ATVDIPLDNMSDSKGKGKELLQWEADLKRREADIRRREEALKSAGVPMEEKNWPPFFPIIHHDIANEIPANAQKLQYLAFASWLGIVLCLFWNFIAVIVCWIR 161          
The following BLAST results are available for this feature:
BLAST of FC876199 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
SCAM6_ORYSJ8.384e-2940.35Secretory carrier-associated membrane protein 6 OS... [more]
SCAM4_ARATH1.211e-2737.93Secretory carrier-associated membrane protein 4 OS... [more]
SCAM5_ORYSJ1.933e-2550.49Secretory carrier-associated membrane protein 5 OS... [more]

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Properties
Property NameValue
Genbank descriptionC32001F01EF DevOvary1 Citrus clementina cDNA clone C32001F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876199 ID=FC876199; Name=FC876199; organism=Citrus clementina; type=EST; length=677bp
GAAATTGTAAAATTCTGAGGCGCGCGCATAAACGCTGACTGAAGACGAGG
CATAAACGCTGACTGAAGACGAGTCCAACAACTTTCATATCATCTCTCTC
TCTTTAAATCGTTCTCCGATTTCTCTCAAGATTTGGTGAAAAAGTTATAA
CCGCTTGTGATGGCCGGCCGTTACGACAGCAATCCCTTCGATGAAGAGGA
AGTGAATCCTTTCTCCGACCCAGCTGTTAGGGGGAAAAGCTCGGGCCAAT
CAAGGTTTGGTGGAGGTGGATTTTTTACAACAAACAGTGCAAGTGTTCCA
CCTGCAACTAATTCAAGGCTTTCACCTCTTCCTCATGAACCAGCTGGTTT
CAATTTTGAACGTGATGCGCCTATTGACATTCCTCTTGATACAGCTGCGG
ATTTGAAGAAGAAAGAGAAGGAACTTCAAGCTAAGGAGGCTGAATTAAGA
AGGCGGGAGCAGGATGTAAGAAGGAAAGAAGAAGCTGCAGCACGAGCTGG
AATTGTTCTTGAGGAGAAAAACTGGCCACCATTTTCCCCCATTATTCATC
ATGACATTGCAAACGAAATACCAATTCATCTACAAAGGCTGCAATATGTT
GCATTTGCAACATATTTAGGATTGTTTGTGTGTCTCCTGTGGAACATCGT
AGCTGTTACCACAGCATGGATCAAAGG
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