FC876205

Overview
NameFC876205
Unique NameFC876205
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876205 vs. ExPASy Swiss-Prot
Match: NADB_MYCTU (L-aspartate oxidase OS=Mycobacterium tuberculosis GN=nadB PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.785e-32
Identity = 98/240 (40.83%), Postives = 128/240 (53.33%), Query Frame = 1
Query:    1 GGHSHHRIVHAA-DMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVT-LLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTAL-ADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERSELAPRDVVARSIDDQLKKRNEKYVLLDISHRPTEKILSHFPNIAAECLKYGLDITRQPIPCGPAAHY 711
            GGHS  RIVHA  D TG E++RAL +A      + +   H A+ +L   DG       V  L V   +    IS  + +LA+GG GH+Y +TTNP  +TGDG+A+   A   +S++EF+QFHPT L A      +P        LITEA+RG+G IL +              +LAPRDVVA +ID +LK   +  V LD   R  E   S FP + A C   G+D  RQPIP  P AHY
Sbjct:  122 GGHSRRRIVHAGGDATGAEVQRALQDAAGM---LDIRTGHVALRVLH--DGT-----AVTGLLVVRPDGCGIISAPSVILATGGLGHLYSATTNPAGSTGDGIALGLWAGVAVSDLEFIQFHPTMLFAGRAGGRRP--------LITEAIRGEGAILVDRQGNSITAGVHPMGDLAPRDVVAAAIDARLKATGDPCVYLDA--RGIEGFASRFPTVTASCRAAGIDPVRQPIPVVPGAHY 341          
BLAST of FC876205 vs. ExPASy Swiss-Prot
Match: NADB_MYCBO (L-aspartate oxidase OS=Mycobacterium bovis GN=nadB PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.785e-32
Identity = 98/240 (40.83%), Postives = 128/240 (53.33%), Query Frame = 1
Query:    1 GGHSHHRIVHAA-DMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVT-LLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTAL-ADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERSELAPRDVVARSIDDQLKKRNEKYVLLDISHRPTEKILSHFPNIAAECLKYGLDITRQPIPCGPAAHY 711
            GGHS  RIVHA  D TG E++RAL +A      + +   H A+ +L   DG       V  L V   +    IS  + +LA+GG GH+Y +TTNP  +TGDG+A+   A   +S++EF+QFHPT L A      +P        LITEA+RG+G IL +              +LAPRDVVA +ID +LK   +  V LD   R  E   S FP + A C   G+D  RQPIP  P AHY
Sbjct:  122 GGHSRRRIVHAGGDATGAEVQRALQDAAGM---LDIRTGHVALRVLH--DGT-----AVTGLLVVRPDGCGIISAPSVILATGGLGHLYSATTNPAGSTGDGIALGLWAGVAVSDLEFIQFHPTMLFAGRAGGRRP--------LITEAIRGEGAILVDRQGNSITAGVHPMGDLAPRDVVAAAIDARLKATGDPCVYLDA--RGIEGFASRFPTVTASCRAAGIDPVRQPIPVVPGAHY 341          
BLAST of FC876205 vs. ExPASy Swiss-Prot
Match: NADB_RHIME (L-aspartate oxidase OS=Rhizobium meliloti GN=nadB PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.977e-32
Identity = 92/236 (38.98%), Postives = 123/236 (52.12%), Query Frame = 1
Query:    7 HSHHRIVHA-ADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERSELAPRDVVARSIDDQLKKRNEKYVLLDISHRPTEKILSHFPNIAAECLKYGLDITRQPIPCGPAAHY 711
            HS  RIV    DM G+ I  AL+ AV + P+I V E +   +L+        V    D    +++  V F ++  +L SGG GH+Y  TTNP  A G G+ MA RA A+I++ EFVQFHPTA+ D G    P        L TEA+RGDG  L N    RFM       ELAPRD+V+R +  +++     +  LD +          FP + A C+  G+D  RQPIP  PA HY
Sbjct:  126 HSERRIVRVKGDMAGKSIMEALIAAVRNTPSIRVIEGYVVEELVREGRFISGVIARPDA--GQSKSRVSFPARAVVLCSGGVGHLYAVTTNPWEACGQGVGMAARAGAIIADPEFVQFHPTAI-DIGKDPAP--------LATEALRGDGATLINSEGRRFMLDIHPDGELAPRDIVSRGVFAEVQAGRGAF--LDCTKAVGRHFPEMFPTVYASCMAAGIDPVRQPIPVTPAVHY 348          
BLAST of FC876205 vs. ExPASy Swiss-Prot
Match: DHSA1_ARATH (Succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial OS=Arabidopsis thaliana GN=SDH1-1 PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.977e-32
Identity = 91/243 (37.45%), Postives = 126/243 (51.85%), Query Frame = 1
Query:    4 GHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLY-DERSELAPRDVVARSIDDQLKK-----RNEKYVLLDISHRPTEKILSHFPNIAAECLKY-GLDITRQPIPCGPAAHY 711
            G   +R   AAD TG  +   L    +   N   F  +FA+DLL   DG    C GV  LN+E   + RF S  T+LA+GG G  Y S T+    TGDG AM  RA   + ++EFVQFHPT +   G             LITE  RG+GGIL N   ERFM  Y     +LA RDVV+RS+  ++++      ++ ++ L ++H P E +    P I+     + G+D+T++PIP  P  HY
Sbjct:  171 GGQAYRCACAADRTGHALLHTLYGQAMKH-NTQFFVEYFALDLLMASDGS---CQGVIALNMEDGTLHRFRSSQTILATGGYGRAYFSATSAHTCTGDGNAMVARAGLPLQDLEFVQFHPTGIYGAGC------------LITEGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPHKDHIYLHLNHLPPEVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHY 397          
BLAST of FC876205 vs. ExPASy Swiss-Prot
Match: DHSA2_ARATH (Succinate dehydrogenase [ubiquinone] flavoprotein subunit 2, mitochondrial OS=Arabidopsis thaliana GN=SDH1-2 PE=1 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.157e-31
Identity = 90/243 (37.04%), Postives = 126/243 (51.85%), Query Frame = 1
Query:    4 GHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERS-ELAPRDVVARSIDDQLKKRN-----EKYVLLDISHRPTEKILSHFPNIAAECLKY-GLDITRQPIPCGPAAHY 711
            G   +R   AAD TG  +   L    +   N   F  +FA+DL+   DG    C GV  LN+E   + RF +  T+LA+GG G  Y S T+    TGDG AM  RA   + ++EFVQFHPT +   G             LITE  RG+GGIL N   E+FM  Y   + +LA RDVV+RS+  ++++       + Y+ L ++H P E +    P I+     + G+D+TR+PIP  P  HY
Sbjct:  169 GGQAYRCACAADRTGHALLHTLYGQAMKH-NTQFFVEYFALDLIMNSDG---TCQGVIALNMEDGTLHRFHAGSTILATGGYGRAYFSATSAHTCTGDGNAMVARAGLPLQDLEFVQFHPTGIYGAGC------------LITEGARGEGGILRNSEGEKFMDRYAPTARDLASRDVVSRSMTMEIRQGRGAGPMKDYLYLYLNHLPPEVLKERLPGISETAAIFAGVDVTREPIPVLPTVHY 395          
BLAST of FC876205 vs. ExPASy Swiss-Prot
Match: DHSA_ORYSJ (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Oryza sativa subsp. japonica GN=SDH1 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.279e-30
Identity = 88/243 (36.21%), Postives = 125/243 (51.44%), Query Frame = 1
Query:    4 GHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLY-DERSELAPRDVVARSIDDQLKKRN-----EKYVLLDISHRPTEKILSHFPNIAAECLKY-GLDITRQPIPCGPAAHY 711
            G   +R   AAD TG  +   L    +   N   F  +FA+DL+   +G    C GV  LN+E   + RF +  T+LA+GG G  Y S T+    TGDG AM  RA   + ++EFVQFHPT +   G             LITE  RG+GGIL N   ERFM  Y     +LA RDVV+RS+  ++++       + ++ L ++H P E +    P I+     + G+D+T++PIP  P  HY
Sbjct:  167 GGQAYRCACAADRTGHAMLHTLYGQAMKH-NTQFFVEYFALDLIMDSEG---TCQGVIALNMEDGTLHRFRATNTILATGGYGRAYFSATSAHTCTGDGNAMVARAGLPLQDLEFVQFHPTGIYGAGC------------LITEGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPLKDHIYLHLNHLPPEVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHY 393          
BLAST of FC876205 vs. ExPASy Swiss-Prot
Match: DHSA_CAEEL (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Caenorhabditis elegans GN=sdha-1 PE=2 SV=3)

HSP 1 Score: 133.265 bits (334), Expect = 1.279e-30
Identity = 88/243 (36.21%), Postives = 127/243 (52.26%), Query Frame = 1
Query:    4 GHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLY-DERSELAPRDVVARSIDDQLKK-----RNEKYVLLDISHRPTEKILSHFPNIAAECLKY-GLDITRQPIPCGPAAHY 711
            G   HR    AD TG  +   L  A +   N + F  +FA+DL+      + VC GV  +++E   + RF SK T+LA+GG G  + S T+    TGDG A+  RA    S+MEFVQFHPT +   G             LITE  RG+GG L N   ERFM  Y     +LA RDVV+RS+  ++ +      ++ ++ L + H P E++    P I+   + + G+D+T++PIP  P  HY
Sbjct:  164 GGQAHRTCCVADRTGHSLLHTLYGASLQY-NCNYFVEYFALDLIME----NGVCVGVIAMDLEDGTIHRFRSKNTVLATGGYGRAFFSCTSAHTCTGDGTALTARAGINNSDMEFVQFHPTGIYGAGC------------LITEGSRGEGGYLVNSAGERFMERYAPNAKDLASRDVVSRSMTVEIMEGRGVGPDKDHIYLQLHHLPAEQLQQRLPGISETAMIFAGVDVTKEPIPVIPTVHY 389          
BLAST of FC876205 vs. ExPASy Swiss-Prot
Match: NADB_BACSU (L-aspartate oxidase OS=Bacillus subtilis GN=nadB PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.671e-30
Identity = 89/238 (37.39%), Postives = 128/238 (53.78%), Query Frame = 1
Query:    1 GGHSHHRIVHAA-DMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERSELAPRDVVARSIDDQLKKRNEKYVLLDISHRPTEKILSHFPNIAAECLKYGLDITRQPIPCGPAAHY 711
            G HS++RI HA  D TGR +   LL+ + S   I + E+  A DLL      D  C GV T + + +  VR   +V +LA+GG G+++   TN L  TGDG+++A+RA A ++++EF QFHPT L   G+         +  L++EAVRG+GG L +    R M       +LAPRD+V+R I +++ K N  Y    I         + FP I A C K G+DI    IP  P  H+
Sbjct:  113 GAHSYNRIFHAGGDATGRLLIDYLLKRINS--KIKLIENETAADLLIE----DGRCIGVMTKDSKGRLKVRHADEV-VLAAGGCGNLFLHHTNDLTVTGDGLSLAYRAGAELTDLEFTQFHPTLLVKNGV---------SYGLVSEAVRGEGGCLVDENGRRIMAERHPLGDLAPRDIVSRVIHEEMAKGNRVY----IDFSAISDFETRFPTITAICEKAGIDIHSGKIPVAPGMHF 330          
BLAST of FC876205 vs. ExPASy Swiss-Prot
Match: NADB_AGRT5 (L-aspartate oxidase OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=nadB PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.671e-30
Identity = 91/236 (38.56%), Postives = 129/236 (54.66%), Query Frame = 1
Query:    7 HSHHRIVHA-ADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERSELAPRDVVARSIDDQLKKRNEKYVLLDISHRPTEKILSHFPNIAAECLKYGLDITRQPIPCGPAAHY 711
            HS  RI+HA  D +G  I RAL +AV   P+I+V E      LLT     D+V  G+         ++   +   +LA+GG G +Y +TTNP    G G+ +A RA A++++MEFVQFHPTAL+    P+          L++EAVRG+G +L N   ERFM      +ELA RD+VAR+ID ++ +  +  V LD          S FP+I   C + G+D  R+ +P  PA HY
Sbjct:  120 HSRRRILHAEGDGSGAAIVRALTDAVRRTPSITVLEGTEVRRLLTE----DSVIAGLACAGPNGSFLLP--ASQVILATGGLGGLYDATTNPSGNFGQGIMLAARAGAILADMEFVQFHPTALSSPRRPLA---------LVSEAVRGEGALLLNENGERFMAAV-PGAELASRDIVARAIDREILRGGQ--VFLDARQALGSGFASRFPSIDLLCREAGIDPARELVPVRPAVHY 337          
BLAST of FC876205 vs. ExPASy Swiss-Prot
Match: NADB_RHILO (L-aspartate oxidase OS=Rhizobium loti GN=nadB PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.850e-30
Identity = 97/239 (40.59%), Postives = 130/239 (54.39%), Query Frame = 1
Query:    7 HSHHRIVHAA-DMTGREIERALLEAVVSDPNISVFEHHFAIDLLT---TLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERSELAPRDVVARSIDDQLKKRNEKYVLLDISHRPTEKILSHFPNIAAECLKYGLDITRQPIPCGPAAHY 711
            HS  RIVHAA D TGRE+ RALL       +I++ E   A+ L+    ++ G   V HG     + T+ VV        LA+GG G ++  TTNPL + G G+A+A  A A ++++EFVQFHPTAL     P+          L++EAVRG+G +L +    R +      +ELA RDVVAR+I DQL   +  Y  LD  H   +K    FP I A C   G+D   +PIP  PAAHY
Sbjct:  121 HSRRRIVHAAGDATGRELFRALLGVARRTRSITIMEGMTALRLVVAEGSIVGLLTVLHGA-VFALPTRRVV--------LATGGIGGLFCDTTNPLSSFGHGLALAACAGAELADLEFVQFHPTALDIARRPMP---------LVSEAVRGEGAVLIDEHGHRLL-ADTPGAELASRDVVARAISDQLAAGHGVY--LDARHCLGQKFARRFPAIDAICKHAGIDPAVEPIPVRPAAHY 338          
The following BLAST results are available for this feature:
BLAST of FC876205 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
NADB_MYCTU1.785e-3240.83L-aspartate oxidase OS=Mycobacterium tuberculosis ... [more]
NADB_MYCBO1.785e-3240.83L-aspartate oxidase OS=Mycobacterium bovis GN=nadB... [more]
NADB_RHIME3.977e-3238.98L-aspartate oxidase OS=Rhizobium meliloti GN=nadB ... [more]
DHSA1_ARATH3.977e-3237.45Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
DHSA2_ARATH1.157e-3137.04Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
DHSA_ORYSJ1.279e-3036.21Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
DHSA_CAEEL1.279e-3036.21Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
NADB_BACSU1.671e-3037.39L-aspartate oxidase OS=Bacillus subtilis GN=nadB P... [more]
NADB_AGRT51.671e-3038.56L-aspartate oxidase OS=Agrobacterium tumefaciens (... [more]
NADB_RHILO2.850e-3040.59L-aspartate oxidase OS=Rhizobium loti GN=nadB PE=3... [more]

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Properties
Property NameValue
Genbank descriptionC32001F10EF DevOvary1 Citrus clementina cDNA clone C32001F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876205 ID=FC876205; Name=FC876205; organism=Citrus clementina; type=EST; length=712bp
GGGGGACACTCCCATCACAGAATCGTCCATGCTGCAGATATGACTGGAAG
GGAGATCGAGCGGGCTCTTTTGGAAGCTGTTGTCAGTGACCCTAATATCT
CAGTGTTCGAGCATCACTTTGCGATAGATTTGCTAACTACTCTGGATGGT
CCTGATGCAGTTTGTCACGGTGTTGACACTTTAAATGTTGAAACACAAGA
GGTGGTACGATTCATTTCAAAGGTGACCTTACTTGCATCAGGTGGAGCTG
GGCATATTTATCCATCGACAACAAATCCTCTGGTGGCCACTGGAGATGGG
ATGGCTATGGCCCACCGAGCTCAAGCAGTGATTTCAAACATGGAATTTGT
GCAGTTCCACCCAACTGCCTTAGCTGATGAGGGCCTTCCCATCAAACCAA
AGAAAACTCGAGAGAATTCATTTCTCATCACTGAAGCTGTCAGGGGTGAT
GGAGGCATCCTTTACAATTTAGGCATGGAACGGTTCATGCCCCTGTATGA
TGAGAGATCTGAGCTTGCTCCTAGGGATGTGGTGGCAAGAAGTATAGATG
ACCAGCTTAAAAAGCGTAATGAGAAGTATGTGCTCCTTGATATAAGTCAC
AGGCCCACGGAAAAAATACTGTCCCACTTTCCCAACATAGCTGCTGAATG
CCTTAAGTATGGACTGGACATAACCCGCCAGCCAATTCCCTGTGGTCCTG
CTGCACATTACA
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