FC876205

Overview
NameFC876205
Unique NameFC876205
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length712
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876205 vs. ExPASy Swiss-Prot
Match: DHSA_SALTY (Succinate dehydrogenase flavoprotein subunit OS=Salmonella typhimurium GN=sdhA PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.850e-30
Identity = 90/245 (36.73%), Postives = 125/245 (51.02%), Query Frame = 1
Query:    1 GGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLY-DERSELAPRDVVARSIDDQLKKRN------EKYVLLDISHRPTEKILSHFPNIAAECLKYG-LDITRQPIPCGPAAHY 711
            GG    R   AAD TG  +   L +  + + + ++F   +A+DL+   DG    C     L +ET EVV F ++ T+LA+GGAG IY STTN  + TGDG+ MA RA   + +ME  QFHPT +A  G+            L+TE  RG+GG L N   ERFM  Y     +LA RDVVARSI  ++++          +  L + H   E + S  P I      +  +D  ++PIP  P  HY
Sbjct:  127 GGEQAARTAAAADRTGHALLHTLYQQNLKN-HTTIFSEWYALDLVKNQDGAVVGC---TALCIETGEVVYFKARATVLATGGAGRIYQSTTNAHINTGDGVGMALRAGVPVQDMEMWQFHPTGIAGAGV------------LVTEGCRGEGGYLLNKHGERFMERYAPNAKDLAGRDVVARSIMIEIREGRGCDGPWGPHAKLKLDHLGKEVLESRLPGILELSRTFAHVDPVKEPIPVIPTCHY 355          
BLAST of FC876205 vs. ExPASy Swiss-Prot
Match: DHSA_ECOLI (Succinate dehydrogenase flavoprotein subunit OS=Escherichia coli (strain K12) GN=sdhA PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.850e-30
Identity = 90/245 (36.73%), Postives = 125/245 (51.02%), Query Frame = 1
Query:    1 GGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLY-DERSELAPRDVVARSIDDQLKKRN------EKYVLLDISHRPTEKILSHFPNIAAECLKYG-LDITRQPIPCGPAAHY 711
            GG    R   AAD TG  +   L +  + + + ++F   +A+DL+   DG    C     L +ET EVV F ++ T+LA+GGAG IY STTN  + TGDG+ MA RA   + +ME  QFHPT +A  G+            L+TE  RG+GG L N   ERFM  Y     +LA RDVVARSI  ++++          +  L + H   E + S  P I      +  +D  ++PIP  P  HY
Sbjct:  127 GGEQAARTAAAADRTGHALLHTLYQQNLKN-HTTIFSEWYALDLVKNQDGAVVGC---TALCIETGEVVYFKARATVLATGGAGRIYQSTTNAHINTGDGVGMAIRAGVPVQDMEMWQFHPTGIAGAGV------------LVTEGCRGEGGYLLNKHGERFMERYAPNAKDLAGRDVVARSIMIEIREGRGCDGPWGPHAKLKLDHLGKEVLESRLPGILELSRTFAHVDPVKEPIPVIPTCHY 355          
BLAST of FC876205 vs. ExPASy Swiss-Prot
Match: DHSA_ECOL6 (Succinate dehydrogenase flavoprotein subunit OS=Escherichia coli O6 GN=sdhA PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.850e-30
Identity = 90/245 (36.73%), Postives = 125/245 (51.02%), Query Frame = 1
Query:    1 GGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLY-DERSELAPRDVVARSIDDQLKKRN------EKYVLLDISHRPTEKILSHFPNIAAECLKYG-LDITRQPIPCGPAAHY 711
            GG    R   AAD TG  +   L +  + + + ++F   +A+DL+   DG    C     L +ET EVV F ++ T+LA+GGAG IY STTN  + TGDG+ MA RA   + +ME  QFHPT +A  G+            L+TE  RG+GG L N   ERFM  Y     +LA RDVVARSI  ++++          +  L + H   E + S  P I      +  +D  ++PIP  P  HY
Sbjct:  127 GGEQAARTAAAADRTGHALLHTLYQQNLKN-HTTIFSEWYALDLVKNQDGAVVGC---TALCIETGEVVYFKARATVLATGGAGRIYQSTTNAHINTGDGVGMAIRAGVPVQDMEMWQFHPTGIAGAGV------------LVTEGCRGEGGYLLNKHGERFMERYAPNAKDLAGRDVVARSIMIEIREGRGCDGPWGPHAKLKLDHLGKEVLESRLPGILELSRTFAHVDPVKEPIPVIPTCHY 355          
BLAST of FC876205 vs. ExPASy Swiss-Prot
Match: DHSA_ECO57 (Succinate dehydrogenase flavoprotein subunit OS=Escherichia coli O157:H7 GN=sdhA PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.850e-30
Identity = 90/245 (36.73%), Postives = 125/245 (51.02%), Query Frame = 1
Query:    1 GGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLY-DERSELAPRDVVARSIDDQLKKRN------EKYVLLDISHRPTEKILSHFPNIAAECLKYG-LDITRQPIPCGPAAHY 711
            GG    R   AAD TG  +   L +  + + + ++F   +A+DL+   DG    C     L +ET EVV F ++ T+LA+GGAG IY STTN  + TGDG+ MA RA   + +ME  QFHPT +A  G+            L+TE  RG+GG L N   ERFM  Y     +LA RDVVARSI  ++++          +  L + H   E + S  P I      +  +D  ++PIP  P  HY
Sbjct:  127 GGEQAARTAAAADRTGHALLHTLYQQNLKN-HTTIFSEWYALDLVKNQDGAVVGC---TALCIETGEVVYFKARATVLATGGAGRIYQSTTNAHINTGDGVGMAIRAGVPVQDMEMWQFHPTGIAGAGV------------LVTEGCRGEGGYLLNKHGERFMERYAPNAKDLAGRDVVARSIMIEIREGRGCDGPWGPHAKLKLDHLGKEVLESRLPGILELSRTFAHVDPVKEPIPVIPTCHY 355          
BLAST of FC876205 vs. ExPASy Swiss-Prot
Match: DHSAB_XENLA (Succinate dehydrogenase [ubiquinone] flavoprotein subunit B, mitochondrial OS=Xenopus laevis GN=sdha-B PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.850e-30
Identity = 88/243 (36.21%), Postives = 126/243 (51.85%), Query Frame = 1
Query:    4 GHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLY-DERSELAPRDVVARSIDDQLKK-----RNEKYVLLDISHRPTEKILSHFPNIAAECLKY-GLDITRQPIPCGPAAHY 711
            G   HR    AD TG  +   L    +   + S F  +FA+DLL      +  C GV  L +E   + RF +K T++A+GG G  Y S T+    TGDG AM  RA     ++EFVQFHPT +   G             LITE  RG+GGIL N   ERFM  Y     +LA RDVV+RS+  ++++     +++ +V L + H P  ++ S  P I+   + + G+D+T++PIP  P  HY
Sbjct:  186 GGQAHRCCCVADRTGHSLLHTLYGRSLRY-DTSYFVEYFALDLLME----NGECRGVIALCMEDGSIHRFRAKNTVIATGGYGRTYFSCTSAHTCTGDGTAMVTRAGLPCQDLEFVQFHPTGIYGAGC------------LITEGCRGEGGILINSEGERFMERYAPVAKDLASRDVVSRSMTIEMREGRGCGKDKDHVYLQLHHLPPSQLASRLPGISETAMIFAGVDVTKEPIPVLPTVHY 411          
BLAST of FC876205 vs. ExPASy Swiss-Prot
Match: DHSAA_XENLA (Succinate dehydrogenase [ubiquinone] flavoprotein subunit A, mitochondrial OS=Xenopus laevis GN=sdha-A PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.349e-30
Identity = 87/243 (35.80%), Postives = 127/243 (52.26%), Query Frame = 1
Query:    4 GHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLY-DERSELAPRDVVARSIDDQLKK-----RNEKYVLLDISHRPTEKILSHFPNIAAECLKY-GLDITRQPIPCGPAAHY 711
            G   HR    AD TG  +   L    +   + S F  +FA+DLL      +  C GV  L +E   + RF +K T++A+GG G  + S T+   +TGDG AM  RA     ++EFVQFHPT +   G             LITE  RG+GGIL N   ERFM  Y     +LA RDVV+RS+  ++++     +++ +V L + H P  ++ S  P I+   + + G+D+T++PIP  P  HY
Sbjct:  186 GGQAHRCCCVADRTGHSLLHTLYGRSLRY-DTSYFVEYFALDLLME----NGECRGVIALCMEDGSIHRFRAKNTVIATGGYGRTFFSCTSAHTSTGDGTAMVTRAGLPCQDLEFVQFHPTGIYGAGC------------LITEGCRGEGGILINSEGERFMERYAPVAKDLASRDVVSRSMTIEIREGRGCGKDKDHVYLQLHHLPPSQLASRLPGISETAMIFAGVDVTKEPIPVLPTVHY 411          
BLAST of FC876205 vs. ExPASy Swiss-Prot
Match: DHSA_XENTR (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Xenopus tropicalis GN=sdha PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 8.293e-30
Identity = 87/243 (35.80%), Postives = 126/243 (51.85%), Query Frame = 1
Query:    4 GHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLY-DERSELAPRDVVARSIDDQLKK-----RNEKYVLLDISHRPTEKILSHFPNIAAECLKY-GLDITRQPIPCGPAAHY 711
            G   HR    AD TG  +   L    +   + S F  +FA+DLL      +  C GV  L +E   + RF +K T++A+GG G  + S T+    TGDG AM  RA     ++EFVQFHPT +   G             LITE  RG+GGIL N   ERFM  Y     +LA RDVV+RS+  ++++     +++ +V L + H P  ++ S  P I+   + + G+D+T++PIP  P  HY
Sbjct:  186 GGQAHRCCCVADRTGHSLLHTLYGRSLRY-DTSYFVEYFALDLLME----NGECRGVIALCMEDGSIHRFRAKNTVIATGGYGRTFFSCTSAHTCTGDGTAMVTRAGLPCQDLEFVQFHPTGIYGAGC------------LITEGCRGEGGILINSEGERFMERYAPVAKDLASRDVVSRSMTIEIREGRGCGKDKDHVYLQLHHLPPSQLASRLPGISETAMIFAGVDVTKEPIPVLPTVHY 411          
BLAST of FC876205 vs. ExPASy Swiss-Prot
Match: DHSA_CHICK (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Gallus gallus GN=SDHA PE=1 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 8.293e-30
Identity = 87/243 (35.80%), Postives = 126/243 (51.85%), Query Frame = 1
Query:    4 GHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLY-DERSELAPRDVVARSIDDQLKK-----RNEKYVLLDISHRPTEKILSHFPNIAAECLKY-GLDITRQPIPCGPAAHY 711
            G   HR    AD TG  +   L    +   + S F  +FA+DLL      +  C GV  L +E   + RF +K T++A+GG G  Y S T+   +TGDG AM  RA     ++EFVQFHPT +   G             LITE  RG+GGIL N   ERFM  Y     +LA RDVV+RS+  ++++       + +V L + H P +++ +  P I+   + + G+D+T++PIP  P  HY
Sbjct:  184 GGQAHRCCCVADRTGHSLLHTLYGRSLRY-DTSYFVEYFALDLLME----NGECRGVIALCIEDGTIHRFRAKNTVIATGGYGRTYFSCTSAHTSTGDGTAMVTRAGLPCQDLEFVQFHPTGIYGAGC------------LITEGCRGEGGILINSQGERFMERYAPVAKDLASRDVVSRSMTIEIREGRGCGPEKDHVYLQLHHLPPQQLATRLPGISETAMIFAGVDVTKEPIPVLPTVHY 409          
BLAST of FC876205 vs. ExPASy Swiss-Prot
Match: NADB_SULSO (L-aspartate oxidase OS=Sulfolobus solfataricus GN=nadB PE=3 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 1.083e-29
Identity = 89/237 (37.55%), Postives = 127/237 (53.59%), Query Frame = 1
Query:    1 GGHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLYDERSELAPRDVVARSIDDQLKKRNEKYVLLDISHRPTEKILSHFPNIAAECLKYGLDITRQPIPCGPAAHY 711
            GGHS  RI+H  D TGREI   LL  +     I++ E     D L  L   D    G  T     ++   F ++  +LA+GG G+++  T+NP    GDG+A+A +A A++S+ EFVQFHPT    +G           ++L+TE +RG+G IL N   ERF+  YD R ELAPRDV++R+I DQ KK +  Y+  D+S  P E     FP ++    +YG     + +   P  HY
Sbjct:  103 GGHSKRRILHKTDDTGREITNFLLN-LAKKKGINLIE-----DKLLALKVKDGKVAGFIT-----EKGGSFDAEKVVLATGGYGYLFKFTSNPSTNIGDGIAIAFKAGALVSDTEFVQFHPTVTTFDG----------QAYLLTETLRGEGAILVNERNERFVFKYDSRGELAPRDVLSRAIYDQYKKGHTVYI--DLS--PIEDFDRKFPILSNYVKRYG-----KRLQVFPGVHY 309          
BLAST of FC876205 vs. ExPASy Swiss-Prot
Match: DHSA_DANRE (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Danio rerio GN=sdha PE=2 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 1.083e-29
Identity = 87/243 (35.80%), Postives = 127/243 (52.26%), Query Frame = 1
Query:    4 GHSHHRIVHAADMTGREIERALLEAVVSDPNISVFEHHFAIDLLTTLDGPDAVCHGVDTLNVETQEVVRFISKVTLLASGGAGHIYPSTTNPLVATGDGMAMAHRAQAVISNMEFVQFHPTALADEGLPIKPKKTRENSFLITEAVRGDGGILYNLGMERFMPLY-DERSELAPRDVVARSIDDQLKK-----RNEKYVLLDISHRPTEKILSHFPNIAAECLKY-GLDITRQPIPCGPAAHY 711
            G   HR    AD TG  +   L    +   + S F  +FA+DLL      D  C GV  L +E   + RF +K T++A+GG G  + S T+   +TGDG AM  RA     ++EFVQFHPT +   G             LITE  RG+GGIL N   ERFM  Y     +LA RDVV+RS+  ++++      ++ +V L + H P +++ +  P I+   + + G+D+T++PIP  P  HY
Sbjct:  180 GGQAHRCCCVADRTGHSLLHTLYGRSLRY-DTSYFVEYFALDLLME----DGECKGVIALCMEDGSIHRFRAKNTVIATGGYGRTFFSCTSAHTSTGDGNAMVTRAGLPCQDLEFVQFHPTGIYGAGC------------LITEGCRGEGGILINSEGERFMERYAPNAKDLASRDVVSRSMTIEIREGRGVGPDKDHVHLQLHHLPPQQLAARLPGISETAMIFAGVDVTKEPIPVLPTVHY 405          
The following BLAST results are available for this feature:
BLAST of FC876205 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
DHSA_SALTY2.850e-3036.73Succinate dehydrogenase flavoprotein subunit OS=Sa... [more]
DHSA_ECOLI2.850e-3036.73Succinate dehydrogenase flavoprotein subunit OS=Es... [more]
DHSA_ECOL62.850e-3036.73Succinate dehydrogenase flavoprotein subunit OS=Es... [more]
DHSA_ECO572.850e-3036.73Succinate dehydrogenase flavoprotein subunit OS=Es... [more]
DHSAB_XENLA2.850e-3036.21Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
DHSAA_XENLA6.349e-3035.80Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
DHSA_XENTR8.293e-3035.80Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
DHSA_CHICK8.293e-3035.80Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
NADB_SULSO1.083e-2937.55L-aspartate oxidase OS=Sulfolobus solfataricus GN=... [more]
DHSA_DANRE1.083e-2935.80Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]

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Properties
Property NameValue
Genbank descriptionC32001F10EF DevOvary1 Citrus clementina cDNA clone C32001F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876205 ID=FC876205; Name=FC876205; organism=Citrus clementina; type=EST; length=712bp
GGGGGACACTCCCATCACAGAATCGTCCATGCTGCAGATATGACTGGAAG
GGAGATCGAGCGGGCTCTTTTGGAAGCTGTTGTCAGTGACCCTAATATCT
CAGTGTTCGAGCATCACTTTGCGATAGATTTGCTAACTACTCTGGATGGT
CCTGATGCAGTTTGTCACGGTGTTGACACTTTAAATGTTGAAACACAAGA
GGTGGTACGATTCATTTCAAAGGTGACCTTACTTGCATCAGGTGGAGCTG
GGCATATTTATCCATCGACAACAAATCCTCTGGTGGCCACTGGAGATGGG
ATGGCTATGGCCCACCGAGCTCAAGCAGTGATTTCAAACATGGAATTTGT
GCAGTTCCACCCAACTGCCTTAGCTGATGAGGGCCTTCCCATCAAACCAA
AGAAAACTCGAGAGAATTCATTTCTCATCACTGAAGCTGTCAGGGGTGAT
GGAGGCATCCTTTACAATTTAGGCATGGAACGGTTCATGCCCCTGTATGA
TGAGAGATCTGAGCTTGCTCCTAGGGATGTGGTGGCAAGAAGTATAGATG
ACCAGCTTAAAAAGCGTAATGAGAAGTATGTGCTCCTTGATATAAGTCAC
AGGCCCACGGAAAAAATACTGTCCCACTTTCCCAACATAGCTGCTGAATG
CCTTAAGTATGGACTGGACATAACCCGCCAGCCAATTCCCTGTGGTCCTG
CTGCACATTACA
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